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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHI526
Library CH
(Link to library)
Clone ID CHI526
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12828-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHI526 (CHI526Q) /CSM/CH/CHI5-B/CHI526Q.Seq.d/
XXXXXXXXXXGGTGTAAAGATGTGGCATNTTCGTCCCTCAAGTAAATTNTATCCAAAAGT
AAACTTTTANAACGTCGTTCCAACCGNTCCACCAGGCTCTGAAATAGTTNTCCAATTTGG
TGAAATCGATTGTNGTGAAGGTATCATCATCTCTGTTGAACGTNGTCGTTATAAAGATGT
TGAAGATGGTATGAATGTTACAATCGATTATTATATCTCTGCTTTAAAAGATTTGGTAGA
TAAGTATAAATATAAAATTTTCATTCATCCAGTTGTACCTGTCCTTAATGAAACTCGTCA
TATAGTTAAAGAATTTAATAAAATTTTTGAAAAGAAAATTAAAGCTTGTAAAGAATTNGT
TTGGTTAGACTTTTTCCCAACTCTNTTAAATCCTCAGGATGAAAATTCTTTTAATACTCA
ATACGCCTTAGATGGCACTCATATGAATCCTTCTTATGTTCCANTAATTGAATCTTGTAT
NAATAATCATTATAATCNNCAATTATCTNCAAGTATTAATTAAATAAATTATTAAAANAA
AATAAAAAAAATAATATTAATAACAATAATAATATAATAATTAAATTAATTTGCCAATTC
AAACAA
sequence update 2002. 9.10
Translated Amino Acid sequence 
---VKMWHXRPSSKXYPKVNFXNVVPTXPPGSEIVXQFGEIDCXEGIIISVERXRYKDVE
DGMNVTIDYYISALKDLVDKYKYKIFIHPVVPVLNETRHIVKEFNKIFEKKIKACKEXVW
LDFFPTLLNPQDENSFNTQYALDGTHMNPSYVPXIESCXNNHYNXQLSXSIN*iny*xki
kkiilitiii**ln*fansn
Translated Amino Acid sequence (All Frames) 
Frame A:
---v*rcgxfvpqvnxiqk*tfxtsfqpxhqalk*xsnlvksivvkvsssllnvvvikml
kmv*mlqsiiisll*kiw*isinikfsfiqlylslmklvi*lknlikflkrklklvknxf
g*tfsqlx*ilrmkillilntp*mali*illmfx*lnlvxiiiiixnylqvlik*iikxk
*kk*y**q**ynn*inlpiqt


Frame B:
---ckdvaxsslk*ixskskllxrrsnrstrl*nsxpiw*nrlx*ryhhlc*txsl*rc*
rwyecynrllylcfkrfgr*v*i*nfhsssctcp**nssys*ri**nf*ken*sl*rixl
vrlfpnsxkssg*kff*ysirlrwhsyesflcsxn*ilyx*sl*sxiixky*lnkllkxn
kknninnnnniiiklicqfkq


Frame C:
---VKMWHXRPSSKXYPKVNFXNVVPTXPPGSEIVXQFGEIDCXEGIIISVERXRYKDVE
DGMNVTIDYYISALKDLVDKYKYKIFIHPVVPVLNETRHIVKEFNKIFEKKIKACKEXVW
LDFFPTLLNPQDENSFNTQYALDGTHMNPSYVPXIESCXNNHYNXQLSXSIN*iny*xki
kkiilitiii**ln*fansn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHI526 (CHI526Q) /CSM/CH/CHI5-B/CHI526Q.Seq.d/                        914   0.0
VHE442 (VHE442Q) /CSM/VH/VHE4-B/VHE442Q.Seq.d/                        898   0.0
VHE232 (VHE232Q) /CSM/VH/VHE2-B/VHE232Q.Seq.d/                        898   0.0
CHR725 (CHR725Q) /CSM/CH/CHR7-B/CHR725Q.Seq.d/                        898   0.0
CHG287 (CHG287Q) /CSM/CH/CHG2-D/CHG287Q.Seq.d/                        898   0.0
AHO782 (AHO782Q) /CSM/AH/AHO7-D/AHO782Q.Seq.d/                        898   0.0
VHA884 (VHA884Q) /CSM/VH/VHA8-D/VHA884Q.Seq.d/                        890   0.0
VHI262 (VHI262Q) /CSM/VH/VHI2-C/VHI262Q.Seq.d/                        886   0.0
SFF890 (SFF890Q) /CSM/SF/SFF8-D/SFF890Q.Seq.d/                        882   0.0
CHK237 (CHK237Q) /CSM/CH/CHK2-B/CHK237Q.Seq.d/                        880   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE014821|AE014821.1 Plasmodium falciparum 3D7 chromosome 14 section 6 of 13 of the complete sequence.    46   0.002  7
AE014833|AE014833.1 Plasmodium falciparum 3D7 chromosome 10 section 5 of 7 of the complete sequence.    32   0.009  9
AL049180|AL049180.3 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from  MAL13P1.    32   0.010  10
AE010579|AE010579.1 Fusobacterium nucleatum subsp. nucleatum ATCC 25586, section 121 of 197 of the complete genome.    44   0.037  4
AP001364|AP001364.3 Homo sapiens genomic DNA, chromosome 18q12 clone:RP11-867A6, WORKING DRAFT SEQUENCE, 9 unordered pieces.    50   0.043  1
AC015967|AC015967.8 Homo sapiens chromosome 18, clone RP11-294N21, complete sequence.    50   0.043  1
AC090407|AC090407.2 Homo sapiens chromosome 18 clone RP11-849J9 map 18, WORKING DRAFT SEQUENCE, 3 unordered pieces.    50   0.043  1
AP001165|AP001165.2 Homo sapiens genomic DNA, chromosome 18q12 clone:RP11-849J9, WORKING DRAFT SEQUENCE, 31 unordered pieces.    50   0.043  1
AL445563|AL445563.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 1/3.    32   0.043  10
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome.    40   0.048  9
dna update 2004.12. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001141_348(CP001141|pid:none) Phaeodactylum tricornutum CCAP 1...    39   0.14
protein update 2009. 1. 2
PSORT 

 psg: 0.67  gvh: 0.38  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: mitochondrial
	 28.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for CHI526 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHI526Z
3' end seq. 
>CHI526Z.Seq
NNNNNNNNNNGGTGTAAAGATGTGGCATNTTCGTCCCTCAAGTAAATTNTATCCAAAAGT
AAACTTTTANAACGTCGTTCCAACCGNTCCACCAGGCTCTGAAATAGTTNTCCAATTTGG
TGAAATCGATTGTNGTGAAGGTATCATCATCTCTGTTGAACGTNGTCGTTATAAAGATGT
TGAAGATGGTATGAATGTTACAATCGATTATTATATCTCTGCTTTAAAAGATTTGGTAGA
TAAGTATAAATATAAAATTTTCATTCATCCAGTTGTACCTGTCCTTAATGAAACTCGTCA
TATAGTTAAAGAATTTAATAAAATTTTTGAAAAGAAAATTAAAGCTTGTAAAGAATTNGT
TTGGTTAGACTTTTTCCCAACTCTNTTAAATCCTCAGGATGAAAATTCTTTTAATACTCA
ATACGCCTTAGATGGCACTCATATGAATCCTTCTTATGTTCCANTAATTGAATCTTGTAT
NAATAATCATTATAATCNNCAATTATCTNCAAGTATTAATTAAATAAATTATTAAAANAA
AATAAAAAAAATAATATTAATAACAATAATAATATAATAATTAAATTAATTTGCCAATTC
AAACAA
Length of 3' end seq. 606
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -