>CHI518 (CHI518Q) /CSM/CH/CHI5-A/CHI518Q.Seq.d/
AAATAATTAAAAATATCATATAAATAAAATCTTATAAAAATATGTCTTTATCAAAATTAT
CACTATCATCAAAAGCATTATCAAATCCTCAAAATTCTAAATTATGTTTAAATGGATTTA
AAAGTTTAATATTAAAGAATATTATATCACCATCATCATCTTATAAAAGTAGAAATTATA
CAAGTGGTTTAAATATTCGCCAATATAATAATAAATCAATTTATAATAATGAATTTAAAA
ATATAATTAAAAATAACAATATCACCAATAATCAATCTAATCCATTAAATATATCTTCAT
TTTCAAATAATTTATTAAATAGTAATACATCAATTTCAACAACAAATACATCATCTTTAT
CAAATATTAGAACATATGCAACTGCAAGAGAGAAAGTTCTTTCAAATGCTGATTCATTAC
CAAATGATGAAAATATTCAAGAGATGGCATATAAAGAATTAATTGAAATGGGTGATTATG
ATACTATTGTAAAAAGATTTGAAAGTTTAGCATTTTCATCAAATGAAGAATGTGTAAGAT
ATTATTTTAAAGCATTAGTATATAGTGGTAAAATTAATAAAGCAAATTTAGGAATGACAA
AATTACCACCACCAACTAAAAAAATGACAAAAGCAGCAAGGGAAGCATTGGGATCTGAAG
XXXXXXXXXXGTTCAAAATGGTAAAGAAACCATTAGTATCAAACAAATCGATGATGCAAG
AGATGATATTTTAATGGGTCGTGCTCGTTTGAATGCTGTAATGAGTGAAGAAGCAAGACG
TAACACTGCCTATCATGAAGCTGGTCATGCTTTGGTAGCAGCAATGACTGAAGCCGCCGA
CCCAATTCATAAAGCCACTATCGTTCAAAGAGGTCAAGCTTTAGGTATGGTTTCACAATT
GCCAGAGATGGATCATGTCCAATATACTCGTAAACAAATGATGGCTCGTCTTGCAATTTG
TTTGGCTGGTCGTGCCGCTGAAGAAATCTTTTTCGGTGTCGATGGTGTTACAAGCGGTGC
ATCATCCGATTTCCAACAAGCTTCTTCTTTGGCTTTCTCTATGATTACCAAATGGGGTAT
GTCCGATAAAGTTGGTTTCATCTATCATAAAGATAAAACTTCACCAGAGGTTCAAAAGAT
CATCGAAGATGAAGTTAAAGATCTTTTAGATAAACAATATCAATACTCTAAAGAATTAAT
CATTAAAAATAGAGATAACATGGAGAAATTAGTCGGCCAATTATTGGAGAAAGAAACTTT
AACTGGTGAAGAAATTTTAAAGATTTTAAATCCAAAAGTAACTTTACCAATTCAAAATAA
TAATAATAATAATAATATTTCTGTTCCATCTTCACCATCTTCATCATCTGGAAATTCATT
ATTACCATTACCTGTACCATCATCTTCTTCACCAATGCA

iiknii*IKSYKNMSLSKLSLSSKALSNPQNSKLCLNGFKSLILKNIISPSSSYKSRNYT
SGLNIRQYNNKSIYNNEFKNIIKNNNITNNQSNPLNISSFSNNLLNSNTSISTTNTSSLS
NIRTYATAREKVLSNADSLPNDENIQEMAYKELIEMGDYDTIVKRFESLAFSSNEECVRY
YFKALVYSGKINKANLGMTKLPPPTKKMTKAAREALGSE---

---VQNGKETISIKQIDDARDDILMGRARLNAVMSEEARRNTAYHEAGHALVAAMTEAAD
PIHKATIVQRGQALGMVSQLPEMDHVQYTRKQMMARLAICLAGRAAEEIFFGVDGVTSGA
SSDFQQASSLAFSMITKWGMSDKVGFIYHKDKTSPEVQKIIEDEVKDLLDKQYQYSKELI
IKNRDNMEKLVGQLLEKETLTGEEILKILNPKVTLPIQNNNNNNNISVPSSPSSSSGNSL
LPLPVPSSSSPM

Frame A:
k*lkisyk*nlikiclyqnyhyhqkhyqilkilnyv*mdlkv*y*rilyhhhhlikveii
qvv*ifaniiinqfiimnlki*lkitispiinlih*iylhfqiiy*ivihqfqqqihhly
qilehmqlqerkffqmlihyqmmkifkrwhikn*lkwvimill*kdlkv*hfhqmknv*d
iilkh*yivvklikqi*e*qnyhhqlkk*qkqqgkhwdlk---

---VQNGKETISIKQIDDARDDILMGRARLNAVMSEEARRNTAYHEAGHALVAAMTEAAD
PIHKATIVQRGQALGMVSQLPEMDHVQYTRKQMMARLAICLAGRAAEEIFFGVDGVTSGA
SSDFQQASSLAFSMITKWGMSDKVGFIYHKDKTSPEVQKIIEDEVKDLLDKQYQYSKELI
IKNRDNMEKLVGQLLEKETLTGEEILKILNPKVTLPIQNNNNNNNISVPSSPSSSSGNSL
LPLPVPSSSSPM

Frame B:
nn*kyhinkil*kyvfikiitiiksiiksskf*imfkwi*kfnikeyyitiiil*k*kly
kwfkyspi***inl***i*kyn*k*qyhq*si*sikyififk*fik**yinfnnkyiifi
ky*nicnckressfkc*fitk**kysrdgi*rin*ng*l*yyckki*kfsifik*rmcki
lf*sisi*w*n**skfrndkitttn*kndksskgsigi*---

---fkmvkkplvsnksmmqemif*wvvlv*ml**vkkqdvtlpimklvmlw*qq*lkppt
qfikplsfkevkl*vwfhncqrwimsnilvnk*wlvlqfvwlvvplkksfsvsmvlqavh
hpisnklllwlsl*lpngvcpiklvssiikiklhqrfkrsskmklkif*innintlkn*s
lkieitwrn*sanywrkkl*lvkkf*rf*iqk*lyqfkiiiiiiiflfhlhhlhhleihy
yhylyhhllhqc

Frame C:
iiknii*IKSYKNMSLSKLSLSSKALSNPQNSKLCLNGFKSLILKNIISPSSSYKSRNYT
SGLNIRQYNNKSIYNNEFKNIIKNNNITNNQSNPLNISSFSNNLLNSNTSISTTNTSSLS
NIRTYATAREKVLSNADSLPNDENIQEMAYKELIEMGDYDTIVKRFESLAFSSNEECVRY
YFKALVYSGKINKANLGMTKLPPPTKKMTKAAREALGSE---

---skw*rnh*yqtnr*ckr*yfngscsfeccne*rskt*hcls*swscfgssnd*srrp
ns*shyrskrssfrygftiardgscpiys*tndgsscnlfgwscr*rnlfrcrwcykrci
irfptsfffgflydyqmgyvr*swfhls*r*nftrgskdhrr*s*rsfr*tisil*rinh
*k*r*hgeisrpiigernfnw*rnfkdfksksnftnsk******yfcsiftifiiwkfii
titctiifftna

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHI518 (CHI518Q) /CSM/CH/CHI5-A/CHI518Q.Seq.d/                       1949   0.0
CHR162 (CHR162Q) /CSM/CH/CHR1-C/CHR162Q.Seq.d/                       1279   0.0
AFN304 (AFN304Q) /CSM/AF/AFN3-A/AFN304Q.Seq.d/                       1279   0.0
VHN314 (VHN314Q) /CSM/VH/VHN3-A/VHN314Q.Seq.d/                       1271   0.0
CHO268 (CHO268Q) /CSM/CH/CHO2-C/CHO268Q.Seq.d/                       1098   0.0
CHH639 (CHH639Q) /CSM/CH/CHH6-B/CHH639Q.Seq.d/                       1005   0.0
SSI556 (SSI556Q) /CSM/SS/SSI5-C/SSI556Q.Seq.d/                        704   0.0
VSA860 (VSA860Q) /CSM/VS/VSA8-C/VSA860Q.Seq.d/                        678   0.0
SSA716 (SSA716Q) /CSM/SS/SSA7-A/SSA716Q.Seq.d/                        502   e-141
SLA125 (SLA125Q) /CSM/SL/SLA1-B/SLA125Q.Seq.d/                         42   0.023

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    42   6e-11  17
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    40   3e-10  21
AE014821|AE014821.1 Plasmodium falciparum 3D7 chromosome 14 section 6 of 13 of the complete sequence.    38   2e-09  15
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome.    36   4e-08  30
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           44   4e-08  29
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    34   1e-07  25
BA000033|BA000033.2 Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2.    36   3e-07  30
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34   1e-06  29
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    32   1e-06  19
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    36   2e-06  24

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ635223_1(AJ635223|pid:none) Pisum sativum mRNA for ftsH-like p...   206   1e-51
(Q8LQJ8) RecName: Full=Cell division protease ftsH homolog 5, mi...   203   1e-50
AE017196_1130(AE017196|pid:none) Wolbachia endosymbiont of Droso...   201   4e-50
CP000236_1047(CP000236|pid:none) Ehrlichia chaffeensis str. Arka...   201   5e-50
BT063337_1(BT063337|pid:none) Zea mays full-length cDNA clone ZM...   200   1e-49
CR954217_1(CR954217|pid:none) Ostreococcus tauri strain OTTH0595...   199   2e-49
(Q8LQJ9) RecName: Full=Cell division protease ftsH homolog 4, mi...   199   2e-49
CP000596_9(CP000596|pid:none) Ostreococcus lucimarinus CCE9901 c...   198   3e-49
DQ308538_1(DQ308538|pid:none) Triticum monococcum cultivar DV92 ...   198   4e-49
CR767821_870(CR767821|pid:none) Ehrlichia ruminantium strain Wel...   197   7e-49

 psg: 0.79  gvh: 0.63  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.55  mip: 0.19
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: mitochondrial
	 20.0 %: nuclear
	  8.0 %: cytoplasmic
	  4.0 %: extracellular, including cell wall

>> prediction for CHI518 is mit

>CHI518F.Seq
AAATAATTAAAAATATCATATAAATAAAATCTTATAAAAATATGTCTTTATCAAAATTAT
CACTATCATCAAAAGCATTATCAAATCCTCAAAATTCTAAATTATGTTTAAATGGATTTA
AAAGTTTAATATTAAAGAATATTATATCACCATCATCATCTTATAAAAGTAGAAATTATA
CAAGTGGTTTAAATATTCGCCAATATAATAATAAATCAATTTATAATAATGAATTTAAAA
ATATAATTAAAAATAACAATATCACCAATAATCAATCTAATCCATTAAATATATCTTCAT
TTTCAAATAATTTATTAAATAGTAATACATCAATTTCAACAACAAATACATCATCTTTAT
CAAATATTAGAACATATGCAACTGCAAGAGAGAAAGTTCTTTCAAATGCTGATTCATTAC
CAAATGATGAAAATATTCAAGAGATGGCATATAAAGAATTAATTGAAATGGGTGATTATG
ATACTATTGTAAAAAGATTTGAAAGTTTAGCATTTTCATCAAATGAAGAATGTGTAAGAT
ATTATTTTAAAGCATTAGTATATAGTGGTAAAATTAATAAAGCAAATTTAGGAATGACAA
AATTACCACCACCAACTAAAAAAATGACAAAAGCAGCAAGGGAAGCATTGGGATCTGAAG
NNNNNNNNNN

>CHI518Z.Seq
NNNNNNNNNNGTTCAAAATGGTAAAGAAACCATTAGTATCAAACAAATCGATGATGCAAG
AGATGATATTTTAATGGGTCGTGCTCGTTTGAATGCTGTAATGAGTGAAGAAGCAAGACG
TAACACTGCCTATCATGAAGCTGGTCATGCTTTGGTAGCAGCAATGACTGAAGCCGCCGA
CCCAATTCATAAAGCCACTATCGTTCAAAGAGGTCAAGCTTTAGGTATGGTTTCACAATT
GCCAGAGATGGATCATGTCCAATATACTCGTAAACAAATGATGGCTCGTCTTGCAATTTG
TTTGGCTGGTCGTGCCGCTGAAGAAATCTTTTTCGGTGTCGATGGTGTTACAAGCGGTGC
ATCATCCGATTTCCAACAAGCTTCTTCTTTGGCTTTCTCTATGATTACCAAATGGGGTAT
GTCCGATAAAGTTGGTTTCATCTATCATAAAGATAAAACTTCACCAGAGGTTCAAAAGAT
CATCGAAGATGAAGTTAAAGATCTTTTAGATAAACAATATCAATACTCTAAAGAATTAAT
CATTAAAAATAGAGATAACATGGAGAAATTAGTCGGCCAATTATTGGAGAAAGAAACTTT
AACTGGTGAAGAAATTTTAAAGATTTTAAATCCAAAAGTAACTTTACCAATTCAAAATAA
TAATAATAATAATAATATTTCTGTTCCATCTTCACCATCTTCATCATCTGGAAATTCATT
ATTACCATTACCTGTACCATCATCTTCTTCACCAATGCA

>CHI518P.Seq
AAATAATTAAAAATATCATATAAATAAAATCTTATAAAAATATGTCTTTATCAAAATTAT
CACTATCATCAAAAGCATTATCAAATCCTCAAAATTCTAAATTATGTTTAAATGGATTTA
AAAGTTTAATATTAAAGAATATTATATCACCATCATCATCTTATAAAAGTAGAAATTATA
CAAGTGGTTTAAATATTCGCCAATATAATAATAAATCAATTTATAATAATGAATTTAAAA
ATATAATTAAAAATAACAATATCACCAATAATCAATCTAATCCATTAAATATATCTTCAT
TTTCAAATAATTTATTAAATAGTAATACATCAATTTCAACAACAAATACATCATCTTTAT
CAAATATTAGAACATATGCAACTGCAAGAGAGAAAGTTCTTTCAAATGCTGATTCATTAC
CAAATGATGAAAATATTCAAGAGATGGCATATAAAGAATTAATTGAAATGGGTGATTATG
ATACTATTGTAAAAAGATTTGAAAGTTTAGCATTTTCATCAAATGAAGAATGTGTAAGAT
ATTATTTTAAAGCATTAGTATATAGTGGTAAAATTAATAAAGCAAATTTAGGAATGACAA
AATTACCACCACCAACTAAAAAAATGACAAAAGCAGCAAGGGAAGCATTGGGATCTGAAG
----------GTTCAAAATGGTAAAGAAACCATTAGTATCAAACAAATCGATGATGCAAG
AGATGATATTTTAATGGGTCGTGCTCGTTTGAATGCTGTAATGAGTGAAGAAGCAAGACG
TAACACTGCCTATCATGAAGCTGGTCATGCTTTGGTAGCAGCAATGACTGAAGCCGCCGA
CCCAATTCATAAAGCCACTATCGTTCAAAGAGGTCAAGCTTTAGGTATGGTTTCACAATT
GCCAGAGATGGATCATGTCCAATATACTCGTAAACAAATGATGGCTCGTCTTGCAATTTG
TTTGGCTGGTCGTGCCGCTGAAGAAATCTTTTTCGGTGTCGATGGTGTTACAAGCGGTGC
ATCATCCGATTTCCAACAAGCTTCTTCTTTGGCTTTCTCTATGATTACCAAATGGGGTAT
GTCCGATAAAGTTGGTTTCATCTATCATAAAGATAAAACTTCACCAGAGGTTCAAAAGAT
CATCGAAGATGAAGTTAAAGATCTTTTAGATAAACAATATCAATACTCTAAAGAATTAAT
CATTAAAAATAGAGATAACATGGAGAAATTAGTCGGCCAATTATTGGAGAAAGAAACTTT
AACTGGTGAAGAAATTTTAAAGATTTTAAATCCAAAAGTAACTTTACCAATTCAAAATAA
TAATAATAATAATAATATTTCTGTTCCATCTTCACCATCTTCATCATCTGGAAATTCATT
ATTACCATTACCTGTACCATCATCTTCTTCACCAATGCA