CHI483 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHI483
Library	CH (Link to library)
Clone ID	CHI483 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U11129-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHI4-D/CHI483Q.Seq.d/
Representative seq. ID	CHI483P (Link to Original site)
Representative DNA sequence	>CHI483 (CHI483Q) /CSM/CH/CHI4-D/CHI483Q.Seq.d/ ATCATTGTTAATAGCAAAAGAAAAATGGCAACAAAAAATACATCTCCTTATGAGATTGAA TATGCAAAGAGTGATAGATCAACATGTTCAACCTGTCAAAGAGGTATTAATAAAGAAGCA GTTCGTATTGGTTATAAAACAAAATCAAAACACTTTGATGGAATGGATGTATCATGGCAT CATTTAAAATGTAAATGTCCACAAGTACCATCATTTACAGATTTAATTCACTGGGAATAC CTTCGTTGGGAAGACCAATTATCAATTAAAACAACTTATTTTTCATCTGAAAAGTATGAT CCAAAATCAGCATCAGAGGTACAAAGAGAGAAATATTTAAAGGCATTATGGGAAGTTAAA GATAGTATTGCCGATAACTTGAAGGGACCAGCAATTAAAAACATCATTCAATATAATAAA GGTTATGTTGATAAGGTATCACCAGTTCATTTACTTCATACTCTCTCTGATTGGATGTTA AAAGGTCGTCCAGGTAGATGTCCAACTTGTAAGAATTTCGATATACTTTTCAATGGTATC GAATATCAATGTAAAGGTTGGATTTCAGGTTTCACAAAATGTGATTGGAAAGGTGATTCA ATTGAAAGATGGGCTGTTCAATTTCCTGATGATCTTTXXXXXXXXXXAGAAGCAAACTGA GTCCACTCGAGGGTAACATGATTGAAAATCAATATATTACACTCAAAACCAAACTCACTC CCACTTGATAAAGATAGTGTAGTTTATAAAACCTTGGTAGATTATGTTGCCAATAGTCAA GATAAACAATTTAGAACCAATATCTGTGTTCAAGATATTCTTTCACTTGAGAGAGAGAAT GAAAGTGAACGTTTCACTCCTTGGGCAAAAGATAAGAATAGATTACTCTTATGGCATGGT AGTAGGTTAACTAATTTCGTATCGATTGTCTCGCAGGGATTAAGAATTGCTCCACCATCT GCTCCAAAAACTGGTTACAGATTTGGTAAAGGTATTTATTTTGCTGATTGTATTAGTAAA TCATTCAGCTATTGTTTCACATCAAGTGATTGTCCAACTGCACTTATGTTATTATGTGAA GTTTCACTTGGTGACATGAATGAATTGAAACATGATACCTATATGGAAGAGGCACCACAT CCATTCCATAGTACAAAAGCTTTAGGTATGGCTGCTCCTCACAAAGATGGTAATCATCCT CTTTCTGATTCTGATGGTTTAGTAGTACCATTAGGTAAAATTTCAAAGACTGGTCTCTCA ACTTCATGTACTCACAATGAATTCATTGTCTATAAAATTGAACAAGTCAGAATCAAATAC ATCTTAAGAGTTTACAANGAAAATAAAA
sequence update	2002.10.25
Translated Amino Acid sequence	IIVNSKRKMATKNTSPYEIEYAKSDRSTCSTCQRGINKEAVRIGYKTKSKHFDGMDVSWH HLKCKCPQVPSFTDLIHWEYLRWEDQLSIKTTYFSSEKYDPKSASEVQREKYLKALWEVK DSIADNLKGPAIKNIIQYNKGYVDKVSPVHLLHTLSDWMLKGRPGRCPTCKNFDILFNGI EYQCKGWISGFTKCDWKGDSIERWAVQFPDDL--- ---RSKLSPLEGNMIENQYITLKTKLTPT*rcslnlgrlccqsrtinqylcsry sfterektfhslgkreitlmawvnfridclagikncsticsknwlqiwryl fcly*iiqllfhiklsnctyvimsftwheietylygrgttsipyksfrygcs sqrwsssffwfsstirnfkdwslnfmysqihclntsqnqihlkslqxk*
Translated Amino Acid sequence (All Frames)	Frame A: IIVNSKRKMATKNTSPYEIEYAKSDRSTCSTCQRGINKEAVRIGYKTKSKHFDGMDVSWH HLKCKCPQVPSFTDLIHWEYLRWEDQLSIKTTYFSSEKYDPKSASEVQREKYLKALWEVK DSIADNLKGPAIKNIIQYNKGYVDKVSPVHLLHTLSDWMLKGRPGRCPTCKNFDILFNGI EYQCKGWISGFTKCDWKGDSIERWAVQFPDDL--- ---RSKLSPLEGNMIENQYITLKTKLTPT*rcslnlgrlccqsrtinqylcsry sfterektfhslgkreitlmawvnfridclagikncsticsknwlqiwryl fcly*iiqllfhiklsnctyvimsftwheietylygrgttsipyksfrygcs sqrwsssffwfsstirnfkdwslnfmysqihclntsqnqihlkslqxk* Frame B: slliakekwqqkihllmrlnmqrvidqhvqpvkevlikkqfvlvikqnqntlmewmyhgi invnvhkyhhlqiftgntfvgktnyqlkqlifhlksmiqnqhqrykernirhygklk ivlpitrdqqlktsfniikvmliryhqfiyfilsligckvvqvdvqlvrisiyfsmvs ninvkvgfqvsqnvigkviqlkdglfnflmif--- ---eanvhsrvtlkinilhskpnslpldkdsvvyktlvdyvansqdkqfrtnicvqdi lslereneserftpwakdknrlllwhgsrltnfvsivsqglriappsapktgyrfgkgiy fadcisksfsycftssdcptalmllcevslgdmnelkhdtymeeaphpfhstkalgmaap hkdgnhplsdsdglvvplgkisktglstscthnefivykieqvrikyilrvyxenk Frame C: hcqkkngnkkyisldickeinmfnlskryrsssywlnkiktlwngcimas fkmmststiiyrfnslgipslgrpiinnnlffikvskisirgtkreifkgimgsr ycrlegtsnkhhsirlcgitssftsyslldvkrssrmsnlefrytfqwyr ismrldfrfhkmlerfnkmgcsis*s--- ---kqtestrghdksiyytqnqthshlikivfikpwimlpivkinnlepisvfkif fhlrermkvnvsllgqkiridysygmvvglisyrlsrrdellhhllqklvtdlvkvfi llivlvnhsaivshqvivqlhlcyyvkfhlvtmnnmipiwkrhhihsivqklvwlll tkmviilflilmv*yhvkfqrlvsqlhvltmnslsiklnksesnts*eftxkik
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CHI483 (CHI483Q) /CSM/CH/CHI4-D/CHI483Q.Seq.d/ 2607 0.0 CHQ835 (CHQ835Q) /CSM/CH/CHQ8-B/CHQ835Q.Seq.d/ 1376 0.0 SHD815 (SHD815Q) /CSM/SH/SHD8-A/SHD815Q.Seq.d/ 1362 0.0 VHB303 (VHB303Q) /CSM/VH/VHB3-A/VHB303Q.Seq.d/ 1360 0.0 SHJ664 (SHJ664Q) /CSM/SH/SHJ6-C/SHJ664Q.Seq.d/ 1360 0.0 AHM188 (AHM188Q) /CSM/AH/AHM1-D/AHM188Q.Seq.d/ 1360 0.0 AHB712 (AHB712Q) /CSM/AH/AHB7-A/AHB712Q.Seq.d/ 1360 0.0 VHA783 (VHA783Q) /CSM/VH/VHA7-D/VHA783Q.Seq.d/ 1354 0.0 AHR444 (AHR444Q) /CSM/AH/AHR4-B/AHR444Q.Seq.d/ 1354 0.0 AHA817 (AHA817Q) /CSM/AH/AHA8-A/AHA817Q.Seq.d/ 1352 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AJ534948\|AJ534948.1 Dictyostelium discoideum mRNA for NAD(+) ADP-ribosyltransferase-1A (adprt-1A gene). 1259 0.0 2 AJ520099\|AJ520099.1 Dictyostelium discoideum mRNA for (ADP-ribosyl)transferase (adprt2 gene). 62 2e-14 3 CQ870481\|CQ870481.1 Sequence 902 from Patent WO2004074320. 36 0.008 13 BA000026\|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome. 34 0.008 27 AL662802\|AL662802.14 Mouse DNA sequence from clone RP23-34N10 on chromosome 11. 38 0.020 9 AC142355\|AC142355.1 Pan troglodytes chromosome 7 clone RP43-22I16, complete sequence. 32 0.030 11 AE016967\|AE016967.1 Mycoplasma gallisepticum strain R section 1 of 4 of the complete genome. 36 0.045 13 AC139644\|AC139644.1 Rattus norvegicus clone CH230-401P15, WORKING DRAFT SEQUENCE, 30 unordered pieces. 40 0.071 5 AC106674\|AC106674.4 Rattus norvegicus clone CH230-108D18, * SEQUENCING IN PROGRESS *, 4 unordered pieces. 38 0.089 11 AC025807\|AC025807.2 Homo sapiens clone RP11-657G2, WORKING DRAFT SEQUENCE, 15 unordered pieces. 50 0.098 1
dna update	2004.12. 5
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value X65497_1(X65497\|pid:none) R.norvegicus mRNA for poly(ADP-ribose)... 186 2e-45 (P27008) RecName: Full=Poly [ADP-ribose] polymerase 1; ... 186 2e-45 PDBF(1A26) MOL_ID: 1; MOLECULE: POLY (ADP-RIBOSE) POLYMERASE; CH... 185 3e-45 (P26446) RecName: Full=Poly [ADP-ribose] polymerase 1; ... 185 3e-45 AK303340_1(AK303340\|pid:none) Homo sapiens cDNA FLJ53442 complet... 184 6e-45 (Q9R152) RecName: Full=Poly [ADP-ribose] polymerase 1; ... 184 8e-45 AK312339_1(AK312339\|pid:none) Homo sapiens cDNA, FLJ92658, highl... 183 1e-44 J03473_1(J03473\|pid:none) Human poly(ADP-ribose) synthetase mRNA... 183 1e-44 AB384394_1(AB384394\|pid:none) Synthetic construct DNA, clone: pF... 183 1e-44 M17081_1(M17081\|pid:none) Human placental poly(ADP-ribose) polym... 183 1e-44
protein update	2009. 4. 2
PSORT	psg: 0.69 gvh: 0.23 alm: 0.54 top: 0.53 tms: 0.00 mit: 0.38 mip: 0.03 nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 36.0 %: nuclear 28.0 %: cytoplasmic 20.0 %: mitochondrial 12.0 %: cytoskeletal 4.0 %: extracellular, including cell wall >> prediction for CHI483 is nuc
5' end seq. ID	CHI483F
5' end seq.	>CHI483F.Seq ATCATTGTTAATAGCAAAAGAAAAATGGCAACAAAAAATACATCTCCTTATGAGATTGAA TATGCAAAGAGTGATAGATCAACATGTTCAACCTGTCAAAGAGGTATTAATAAAGAAGCA GTTCGTATTGGTTATAAAACAAAATCAAAACACTTTGATGGAATGGATGTATCATGGCAT CATTTAAAATGTAAATGTCCACAAGTACCATCATTTACAGATTTAATTCACTGGGAATAC CTTCGTTGGGAAGACCAATTATCAATTAAAACAACTTATTTTTCATCTGAAAAGTATGAT CCAAAATCAGCATCAGAGGTACAAAGAGAGAAATATTTAAAGGCATTATGGGAAGTTAAA GATAGTATTGCCGATAACTTGAAGGGACCAGCAATTAAAAACATCATTCAATATAATAAA GGTTATGTTGATAAGGTATCACCAGTTCATTTACTTCATACTCTCTCTGATTGGATGTTA AAAGGTCGTCCAGGTAGATGTCCAACTTGTAAGAATTTCGATATACTTTTCAATGGTATC GAATATCAATGTAAAGGTTGGATTTCAGGTTTCACAAAATGTGATTGGAAAGGTGATTCA ATTGAAAGATGGGCTGTTCAATTTCCTGATGATCTTTNNNNNNNNNN
Length of 5' end seq.	647
3' end seq. ID	CHI483Z
3' end seq.	>CHI483Z.Seq NNNNNNNNNNAGAAGCAAACTGAGTCCACTCGAGGGTAACATGATTGAAAATCAATATAT TACACTCAAAACCAAACTCACTCCCACTTGATAAAGATAGTGTAGTTTATAAAACCTTGG TAGATTATGTTGCCAATAGTCAAGATAAACAATTTAGAACCAATATCTGTGTTCAAGATA TTCTTTCACTTGAGAGAGAGAATGAAAGTGAACGTTTCACTCCTTGGGCAAAAGATAAGA ATAGATTACTCTTATGGCATGGTAGTAGGTTAACTAATTTCGTATCGATTGTCTCGCAGG GATTAAGAATTGCTCCACCATCTGCTCCAAAAACTGGTTACAGATTTGGTAAAGGTATTT ATTTTGCTGATTGTATTAGTAAATCATTCAGCTATTGTTTCACATCAAGTGATTGTCCAA CTGCACTTATGTTATTATGTGAAGTTTCACTTGGTGACATGAATGAATTGAAACATGATA CCTATATGGAAGAGGCACCACATCCATTCCATAGTACAAAAGCTTTAGGTATGGCTGCTC CTCACAAAGATGGTAATCATCCTCTTTCTGATTCTGATGGTTTAGTAGTACCATTAGGTA AAATTTCAAAGACTGGTCTCTCAACTTCATGTACTCACAATGAATTCATTGTCTATAAAA TTGAACAAGTCAGAATCAAATACATCTTAAGAGTTTACAANGAAAATAAAA
Length of 3' end seq.	711
Connected seq. ID	CHI483P
Connected seq.	>CHI483P.Seq ATCATTGTTAATAGCAAAAGAAAAATGGCAACAAAAAATACATCTCCTTATGAGATTGAA TATGCAAAGAGTGATAGATCAACATGTTCAACCTGTCAAAGAGGTATTAATAAAGAAGCA GTTCGTATTGGTTATAAAACAAAATCAAAACACTTTGATGGAATGGATGTATCATGGCAT CATTTAAAATGTAAATGTCCACAAGTACCATCATTTACAGATTTAATTCACTGGGAATAC CTTCGTTGGGAAGACCAATTATCAATTAAAACAACTTATTTTTCATCTGAAAAGTATGAT CCAAAATCAGCATCAGAGGTACAAAGAGAGAAATATTTAAAGGCATTATGGGAAGTTAAA GATAGTATTGCCGATAACTTGAAGGGACCAGCAATTAAAAACATCATTCAATATAATAAA GGTTATGTTGATAAGGTATCACCAGTTCATTTACTTCATACTCTCTCTGATTGGATGTTA AAAGGTCGTCCAGGTAGATGTCCAACTTGTAAGAATTTCGATATACTTTTCAATGGTATC GAATATCAATGTAAAGGTTGGATTTCAGGTTTCACAAAATGTGATTGGAAAGGTGATTCA ATTGAAAGATGGGCTGTTCAATTTCCTGATGATCTTT----------AGAAGCAAACTGA GTCCACTCGAGGGTAACATGATTGAAAATCAATATATTACACTCAAAACCAAACTCACTC CCACTTGATAAAGATAGTGTAGTTTATAAAACCTTGGTAGATTATGTTGCCAATAGTCAA GATAAACAATTTAGAACCAATATCTGTGTTCAAGATATTCTTTCACTTGAGAGAGAGAAT GAAAGTGAACGTTTCACTCCTTGGGCAAAAGATAAGAATAGATTACTCTTATGGCATGGT AGTAGGTTAACTAATTTCGTATCGATTGTCTCGCAGGGATTAAGAATTGCTCCACCATCT GCTCCAAAAACTGGTTACAGATTTGGTAAAGGTATTTATTTTGCTGATTGTATTAGTAAA TCATTCAGCTATTGTTTCACATCAAGTGATTGTCCAACTGCACTTATGTTATTATGTGAA GTTTCACTTGGTGACATGAATGAATTGAAACATGATACCTATATGGAAGAGGCACCACAT CCATTCCATAGTACAAAAGCTTTAGGTATGGCTGCTCCTCACAAAGATGGTAATCATCCT CTTTCTGATTCTGATGGTTTAGTAGTACCATTAGGTAAAATTTCAAAGACTGGTCTCTCA ACTTCATGTACTCACAATGAATTCATTGTCTATAAAATTGAACAAGTCAGAATCAAATAC ATCTTAAGAGTTTACAANGAAAATAAAA
Length of connected seq.	1338
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas