>CHI467 (CHI467Q) /CSM/CH/CHI4-C/CHI467Q.Seq.d/
ATATTAAAATATAGTTTTTTAAGAATTGGTATTTATATATTAAAATATAGATTATAGATT
TTATAACAAATCCATTTTTTTATTATATCTTTTTTTTTTTTTAAAAAANTAAAAAAAAAN
TAAAAAAAANGGGXXXXXXXXXXGTCATTGGTAAAATGAATAATGGTGAATCTTATCTCG
ATGATATTGGTACATTTTTTGGTGNAGGTGGTGGTGGTGATGGTAGTTTAGATATCGCTC
ATGTATCTGGAGAGAAAGCAGTACTCATTCAAAAGGAGATTGAAGATTTAAAGAAACAAA
AAAAGAGAGATCAAGATAAATTGGCAGAGAAAGATAAACTCTTAACTAAATTGGCAAAGA
GAATGAGAAAGATGGAAGAGGCAATTAAATTAGGTAAAGGTTTAGAATATTTAAATAATC
AAATTGAAATTGAATCACCACCCGATTCATCTACAAGTACACCACAAGAAACAACACCTG
GTGGCACCAAAGTACCTTTGAAAACTTCACCAGTTACAAAGGCTGATCTTAAACATAAAC
TTTCAACATTTACAACTGCTAAAGCTCCAAATGGTGTAAGTGATTTCCTTAGCGGTCTTG
ATACCACTAATCAACAAGGAAGTACGGATGCATCTCAAACTGAAGCTGGTAGTGGCGACG
GTATACCTTTACCACCGGGAGCACCTCCCCCACCTCCACCACCAGGTGGTAAATTAGCAC
CATCAACACCACAACTATGTTCACGTCCACCATCAATTAAAATGAAATCATATCAATGGA
CACGTTATCGTACTAGAAACGTTACCAATACATTCGGAAGAATGTTAATCTCACAAAGTA
TAAGACTGTTTACCACANAACAAATG

iki*ffknwylyiki*iidfitnpffyyiffff*KXKKKXKKX---

---VIGKMNNGESYLDDIGTFFGXGGGGDGSLDIAHVSGEKAVLIQKEIEDLKKQKKRDQ
DKLAEKDKLLTKLAKRMRKMEEAIKLGKGLEYLNNQIEIESPPDSSTSTPQETTPGGTKV
PLKTSPVTKADLKHKLSTFTTAKAPNGVSDFLSGLDTTNQQGSTDASQTEAGSGDGIPLP
PGAPPPPPPPGGKLAPSTPQLCSRPPSIKMKSYQWTRYRTRNVTNTFGRMLISQSIRLFT
TXQM

Frame A:
ilkysflrigiyilkyrl*il*qihffiisffffkkxkkx*kkx---

---VIGKMNNGESYLDDIGTFFGXGGGGDGSLDIAHVSGEKAVLIQKEIEDLKKQKKRDQ
DKLAEKDKLLTKLAKRMRKMEEAIKLGKGLEYLNNQIEIESPPDSSTSTPQETTPGGTKV
PLKTSPVTKADLKHKLSTFTTAKAPNGVSDFLSGLDTTNQQGSTDASQTEAGSGDGIPLP
PGAPPPPPPPGGKLAPSTPQLCSRPPSIKMKSYQWTRYRTRNVTNTFGRMLISQSIRLFT
TXQM

Frame B:
y*nivf*elvfiy*nidyrfynksifllylffflkx*kkxkkxg---

---slvk*imvnlismilvhflvxvvvvmvv*islmylerkqysfkrrlki*rnkkreik
inwqrkins*lnwqre*erwkrqln*vkv*ni*iiklklnhhpihlqvhhkkqhlvapky
l*klhqlqrlilninfqhlqllklqmv*vislavliplinkevrmhlklklvvatvylyh
rehlphlhhqvvn*hhqhhnyvhvhhqlk*nhinghvivletlpihseec*shkv*dclp
xnk

Frame C:
iki*ffknwylyiki*iidfitnpffyyiffff*KXKKKXKKX---

---hw*ne*w*ilsr*ywyifwxrwww*w*fryrsciwressthskgd*rfketkkersr
*igrer*tln*igkenekdgrgn*ir*rfrifk*sn*n*ittrfiykyttrnntwwhqst
fenftsykg*s*t*tfniync*sskwck*fp*rs*yh*strkygcisn*sw*wrrytftt
gstsptsttrw*istintttmftstin*neiismdtlsy*kryqyirknvnltkyktvyh
xtn

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHI467 (CHI467Q) /CSM/CH/CHI4-C/CHI467Q.Seq.d/                       1380   0.0
SLE344 (SLE344Q) /CSM/SL/SLE3-B/SLE344Q.Seq.d/                       1306   0.0
CFH376 (CFH376Q) /CSM/CF/CFH3-D/CFH376Q.Seq.d/                       1294   0.0
AFF686 (AFF686Q) /CSM/AF/AFF6-D/AFF686Q.Seq.d/                        886   0.0
CHF259 (CHF259Q) /CSM/CH/CHF2-C/CHF259Q.Seq.d/                        751   0.0
AHD562 (AHD562Q) /CSM/AH/AHD5-C/AHD562Q.Seq.d/                        678   0.0
AFG401 (AFG401Q) /CSM/AF/AFG4-A/AFG401Q.Seq.d/                        628   e-179
CHR553 (CHR553Q) /CSM/CH/CHR5-C/CHR553Q.Seq.d/                        434   e-120
CHE152 (CHE152Q) /CSM/CH/CHE1-C/CHE152Q.Seq.d/                        242   7e-63
SFK221 (SFK221Q) /CSM/SF/SFK2-A/SFK221Q.Seq.d/                         46   9e-04

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AJ812734|AJ812734.1 Dictyostelium discoideum mRNA for diaphanous-related formin dDia4  (drf4 gene).  1013   0.0    4
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    36   3e-04  15
CO540388|CO540388.1 tai10a08.y1 HyEch JUMY T1 Hydractinia echinata cDNA 5', mRNA sequence.    42   0.001  2
CO539184|CO539184.1 tai08c06.y1 HyEch JUMY T1 Hydractinia echinata cDNA 5' similar to TR:Q00485 Q00485 MINI-COLLAGEN ;, mRNA sequence.    42   0.001  2
CO720701|CO720701.1 tai49a11.y1 HyEch JUMY T1 Hydractinia echinata cDNA 5' similar to TR:Q00485 Q00485 MINI-COLLAGEN ;, mRNA sequence.    42   0.001  2
CF653859|CF653859.1 tac77c12.y1 Hydra EST -IV Hydra magnipapillata cDNA 5' similar to TR:Q00485 Q00485 MINI-COLLAGEN ;, mRNA sequence.    44   0.001  2
CO720905|CO720905.1 tai52e04.y1 HyEch JUMY T1 Hydractinia echinata cDNA 5' similar to TR:Q00485 Q00485 MINI-COLLAGEN ;, mRNA sequence.    42   0.001  2
AC079538|AC079538.1 Mus musculus clone RP23-369C16, WORKING DRAFT SEQUENCE, 37 unordered pieces.    42   0.002  4
CO720312|CO720312.1 tai42c04.y1 HyEch JUMY T1 Hydractinia echinata cDNA 5' similar to TR:Q00485 Q00485 MINI-COLLAGEN ;, mRNA sequence.    42   0.003  2
CO539905|CO539905.1 tai13c07.y1 HyEch JUMY T1 Hydractinia echinata cDNA 5' similar to TR:Q00485 Q00485 MINI-COLLAGEN ;, mRNA sequence.    42   0.003  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q5TJ55) RecName: Full=Formin-D; AltName: Full=Diaphanous-relate...   333   3e-90
(Q07850) RecName: Full=Regulatory protein E2;  &X70828_4(X70828|...    37   1.0
AE014298_633(AE014298|pid:none) Drosophila melanogaster chromoso...    35   3.0
AF061133_1(AF061133|pid:none) Plasmodium falciparum isolate IFA1...    35   3.0
CP000089_755(CP000089|pid:none) Dechloromonas aromatica RCB, com...    35   4.0
DQ229272_1(DQ229272|pid:none) Phytophthora sojae elicitin-like p...    35   4.0
CP000822_981(CP000822|pid:none) Citrobacter koseri ATCC BAA-895,...    34   5.2
EF495202_1(EF495202|pid:none) Malus x domestica bHLH transcripti...    34   5.2
AE008384_1676(AE008384|pid:none) Methanosarcina mazei strain Goe...    34   5.2
U70136_1(U70136|pid:none) Human megakaryocyte stimulating factor...    34   5.2

 psg: 0.67  gvh: 0.39  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum

>> prediction for CHI467 is nuc

>CHI467F.Seq
ATATTAAAATATAGTTTTTTAAGAATTGGTATTTATATATTAAAATATAGATTATAGATT
TTATAACAAATCCATTTTTTTATTATATCTTTTTTTTTTTTTAAAAAANTAAAAAAAAAN
TAAAAAAAANGGGNNNNNNNNNN

>CHI467Z.Seq
NNNNNNNNNNGTCATTGGTAAAATGAATAATGGTGAATCTTATCTCGATGATATTGGTAC
ATTTTTTGGTGNAGGTGGTGGTGGTGATGGTAGTTTAGATATCGCTCATGTATCTGGAGA
GAAAGCAGTACTCATTCAAAAGGAGATTGAAGATTTAAAGAAACAAAAAAAGAGAGATCA
AGATAAATTGGCAGAGAAAGATAAACTCTTAACTAAATTGGCAAAGAGAATGAGAAAGAT
GGAAGAGGCAATTAAATTAGGTAAAGGTTTAGAATATTTAAATAATCAAATTGAAATTGA
ATCACCACCCGATTCATCTACAAGTACACCACAAGAAACAACACCTGGTGGCACCAAAGT
ACCTTTGAAAACTTCACCAGTTACAAAGGCTGATCTTAAACATAAACTTTCAACATTTAC
AACTGCTAAAGCTCCAAATGGTGTAAGTGATTTCCTTAGCGGTCTTGATACCACTAATCA
ACAAGGAAGTACGGATGCATCTCAAACTGAAGCTGGTAGTGGCGACGGTATACCTTTACC
ACCGGGAGCACCTCCCCCACCTCCACCACCAGGTGGTAAATTAGCACCATCAACACCACA
ACTATGTTCACGTCCACCATCAATTAAAATGAAATCATATCAATGGACACGTTATCGTAC
TAGAAACGTTACCAATACATTCGGAAGAATGTTAATCTCACAAAGTATAAGACTGTTTAC
CACANAACAAATG

>CHI467P.Seq
ATATTAAAATATAGTTTTTTAAGAATTGGTATTTATATATTAAAATATAGATTATAGATT
TTATAACAAATCCATTTTTTTATTATATCTTTTTTTTTTTTTAAAAAANTAAAAAAAAAN
TAAAAAAAANGGG----------GTCATTGGTAAAATGAATAATGGTGAATCTTATCTCG
ATGATATTGGTACATTTTTTGGTGNAGGTGGTGGTGGTGATGGTAGTTTAGATATCGCTC
ATGTATCTGGAGAGAAAGCAGTACTCATTCAAAAGGAGATTGAAGATTTAAAGAAACAAA
AAAAGAGAGATCAAGATAAATTGGCAGAGAAAGATAAACTCTTAACTAAATTGGCAAAGA
GAATGAGAAAGATGGAAGAGGCAATTAAATTAGGTAAAGGTTTAGAATATTTAAATAATC
AAATTGAAATTGAATCACCACCCGATTCATCTACAAGTACACCACAAGAAACAACACCTG
GTGGCACCAAAGTACCTTTGAAAACTTCACCAGTTACAAAGGCTGATCTTAAACATAAAC
TTTCAACATTTACAACTGCTAAAGCTCCAAATGGTGTAAGTGATTTCCTTAGCGGTCTTG
ATACCACTAATCAACAAGGAAGTACGGATGCATCTCAAACTGAAGCTGGTAGTGGCGACG
GTATACCTTTACCACCGGGAGCACCTCCCCCACCTCCACCACCAGGTGGTAAATTAGCAC
CATCAACACCACAACTATGTTCACGTCCACCATCAATTAAAATGAAATCATATCAATGGA
CACGTTATCGTACTAGAAACGTTACCAATACATTCGGAAGAATGTTAATCTCACAAAGTA
TAAGACTGTTTACCACANAACAAATG