AFG242
Library AF
(Link to library)
Clone ID AFG242
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15589-1
Original site URL
Representative seq. ID AFG242F
(Link to Original site)
Representative DNA sequence
>AFG242 (AFG242Q) /CSM/AF/AFG2-B/AFG242Q.Seq.d/
AATTTTCAATTATTCTAATTTTTAATTTTTTTATATATATACATAAATATTAATTTTTAT
TTTTATTTTTTTTTATAATTTTCCAACATAACANTATCTAATTATAATXXXXXXXXXX
sequence update 2001. 6. 2
Translated Amino Acid sequence
nfqlf*FLIFLYIYININFYFYFFL*fsnitxsny---


Translated Amino Acid sequence (All Frames)
Frame A:
nfqlf*FLIFLYIYININFYFYFFL*fsnitxsny---


Frame B:
ifnysnf*ffyiyt*ilifififfynfpt*xylii---


Frame C:
fsiilifnffiyihky*flflfffiifqhnxi*l*---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFN192 (VFN192Q) /CSM/VF/VFN1-D/VFN192Q.Seq.d/ 62 2e-09
VFN105 (VFN105Q) /CSM/VF/VFN1-A/VFN105Q.Seq.d/ 62 2e-09
VFL703 (VFL703Q) /CSM/VF/VFL7-A/VFL703Q.Seq.d/ 62 2e-09
VFK869 (VFK869Q) /CSM/VF/VFK8-C/VFK869Q.Seq.d/ 62 2e-09
VFJ870 (VFJ870Q) /CSM/VF/VFJ8-C/VFJ870Q.Seq.d/ 62 2e-09
VFJ151 (VFJ151Q) /CSM/VF/VFJ1-C/VFJ151Q.Seq.d/ 62 2e-09
VFA731 (VFA731Q) /CSM/VF/VFA7-B/VFA731Q.Seq.d/ 62 2e-09
SSC647 (SSC647Q) /CSM/SS/SSC6-B/SSC647Q.Seq.d/ 62 2e-09
SFI646 (SFI646Q) /CSM/SF/SFI6-B/SFI646Q.Seq.d/ 62 2e-09
SFG838 (SFG838Q) /CSM/SF/SFG8-B/SFG838Q.Seq.d/ 62 2e-09

own update 2004. 7.12
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

L16578|L16578.1 Dictyostelium discoideum HIV1 TAT-binding protein homologous protein mRNA, complete cds. 62 2e-06 1
AL353595|AL353595.9 Human DNA sequence from clone RP11-81P8 on chromosome 9. 34 4.7 2

dna update 2004. 5. 7
Homology vs Protein

***** No hits found ******

Lambda K H
0.303 0.116 0.315

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 26,192,582
protein update 2009. 4.20
PSORT -
5' end seq. ID AFG242F
5' end seq.
>AFG242F.Seq
AATTTTCAATTATTCTAATTTTTAATTTTTTTATATATATACATAAATATTAATTTTTAT
TTTTATTTTTTTTTATAATTTTCCAACATAACANTATCTAATTATAAT----------
Length of 5' end seq. 108
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -