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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHI403
Library CH
(Link to library)
Clone ID CHI403
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16374-1|Contig-U16511-1
Original site URL
Representative seq. ID CHI403P
(Link to Original site)
Representative DNA sequence 
>CHI403 (CHI403Q) /CSM/CH/CHI4-A/CHI403Q.Seq.d/
ACAACAACAACAACAACAACAACAACAACAACATCAACAACATCAACAACATCAACATCA
ACATCAACAACACCAACACCAACACCAACACCAACACCAACATCAACATCAACAACAACA
ACATCAACAACAAGCCCAACAACAACAACCACACCTACACCAACATCATCAACAACGACA
TCAACACCATCAATACCAACAACAACNACAACGACNACAACNCCNACAACNACNACAACN
ACNACNACNACNACAACNACNACNACNACNACAACNACNACAACNACNACNACANCNACA
NCNACNACAACGACNACXXXXXXXXXXAAACCCAAGAAAACAATCAAGAAAACAATCAAG
AAAACAATCAAGAAAATAAAAATAATCAAAGCAAAATTCAACAAGAACAAAATGAAAAAC
AAGAACAAAATGAAAAACAAGAAGTGAATGAAAAACAAGAAGTGAATGAAAAACAAGAAG
TGAATGAAAAACAAGAATTGAATGAAAAACAAGAAGTGAATGAAAAACAAGAAGTGAACG
AAAAACAAGAAGTGAATGAAAAACAAGAACAAAATGAAAAACAAGAAATAAACCAAGAAC
AATTGAGTCAACAAAAGAATGAACAACAAGAAAAATTGAATCAACAAAATAATCAACANC
AAGAAAGAAGTTGAAATAAAACAAAAATAACCAAAAACAAAATAGTAACAATTC
sequence update 2002.10.25
Translated Amino Acid sequence 
TTTTTTTTTTTSTTSTTSTSTSTTPTPTPTPTPTSTSTTTTSTTSPTTTTTPTPTSSTTT
STPSIPTTTTTTTTPTTTTTTTTTTTTTTTTTTTTTTTXTXTTTT---

---TQENNQENNQENNQENKNNQSKIQQEQNEKQEQNEKQEVNEKQEVNEKQEVNEKQEL
NEKQEVNEKQEVNEKQEVNEKQEQNEKQEINQEQLSQQKNEQQEKLNQQNNQXQERS*nk
tkitknkivti
Translated Amino Acid sequence (All Frames) 
Frame A:
TTTTTTTTTTTSTTSTTSTSTSTTPTPTPTPTPTSTSTTTTSTTSPTTTTTPTPTSSTTT
STPSIPTTTTTTTTPTTTTTTTTTTTTTTTTTTTTTTTXTXTTTT---

---kpkktikktikktikkikiikakfnknkmknknkmknkk*mknkk*mknkk*mknkn
*mknkk*mknkk*tknkk*mknknkmknkk*tknn*vnkrmnnkkn*inkiinxkkevei
kqk*pktk**qf

Frame B:
qqqqqqqqqqhqqhqqhqhqhqqhqhqhqhqhqhqhqqqqhqqqaqqqqphlhqhhqqrh
qhhqyqqqxqrxqxxqxxqxxxxxqxxxxxqxxqxxxxxxxxqrx---

---nprkqsrkqsrkqsrk*k*skqnstrtk*ktrtk*ktrse*ktrse*ktrse*ktri
e*ktrse*ktrserktrse*ktrtk*ktrnkprtiestke*ttrkiestk*stxrkklk*
nknnqkqnsnn

Frame C:
nnnnnnnnnninninninininntntntntntnininnnninnkpnnnnhtytniinndi
ntintnnnxndxnxxnxxnxxxxxnxxxxxnxxnxxxxxxxxndx---

---TQENNQENNQENNQENKNNQSKIQQEQNEKQEQNEKQEVNEKQEVNEKQEVNEKQEL
NEKQEVNEKQEVNEKQEVNEKQEQNEKQEINQEQLSQQKNEQQEKLNQQNNQXQERS*nk
tkitknkivti
Homology vs CSM-cDNA 

 ***** No hits found ******

Lambda     K      H
    1.37    0.711     1.31

Gapped
Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 132
Number of Sequences: 97611
Number of extensions: 132
Number of successful extensions: 0
Number of sequences better than 10.0: 0
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 0
length of query: 714
length of database: 80,480,566
effective HSP length: 18
effective length of query: 696
effective length of database: 78,723,568
effective search space: 54791603328
effective search space used: 54791603328
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)







Dictyostelium discoideum cDNA Project Home
own update 2009. 4. 4
Homology vs DNA 

 ***** No hits found ******

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Hits to DB: 44,664
Number of Sequences: 40139555
Number of extensions: 44664
Number of successful extensions: 0
Number of sequences better than 10.0: 0
length of query: 714
length of database: \,003,219,464
effective HSP length: 22
effective length of query: 692
effective length of database: [,120,149,254
effective search space: 29839143283768
effective search space used: 29839143283768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.







Dictyostelium discoideum cDNA Project Home
dna update 2004.12. 4
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 82,436,615
protein update 2009. 4. 2
PSORT 

 psg: 0.75  gvh: 0.36  alm: 0.68  top: 0.53  tms: 0.00  mit: 1.40  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: mitochondrial
	 12.0 %: cytoplasmic
	  8.0 %: nuclear
	  4.0 %: cytoskeletal

>> prediction for CHI403 is mit
5' end seq. ID CHI403F
5' end seq. 
>CHI403F.Seq
ACAACAACAACAACAACAACAACAACAACAACATCAACAACATCAACAACATCAACATCA
ACATCAACAACACCAACACCAACACCAACACCAACACCAACATCAACATCAACAACAACA
ACATCAACAACAAGCCCAACAACAACAACCACACCTACACCAACATCATCAACAACGACA
TCAACACCATCAATACCAACAACAACNACAACGACNACAACNCCNACAACNACNACAACN
ACNACNACNACNACAACNACNACNACNACNACAACNACNACAACNACNACNACANCNACA
NCNACNACAACGACNACNNNNNNNNNN
Length of 5' end seq. 327
3' end seq. ID CHI403Z
3' end seq. 
>CHI403Z.Seq
NNNNNNNNNNAAACCCAAGAAAACAATCAAGAAAACAATCAAGAAAACAATCAAGAAAAT
AAAAATAATCAAAGCAAAATTCAACAAGAACAAAATGAAAAACAAGAACAAAATGAAAAA
CAAGAAGTGAATGAAAAACAAGAAGTGAATGAAAAACAAGAAGTGAATGAAAAACAAGAA
TTGAATGAAAAACAAGAAGTGAATGAAAAACAAGAAGTGAACGAAAAACAAGAAGTGAAT
GAAAAACAAGAACAAAATGAAAAACAAGAAATAAACCAAGAACAATTGAGTCAACAAAAG
AATGAACAACAAGAAAAATTGAATCAACAAAATAATCAACANCAAGAAAGAAGTTGAAAT
AAAACAAAAATAACCAAAAACAAAATAGTAACAATTC
Length of 3' end seq. 397
Connected seq. ID CHI403P
Connected seq. 
>CHI403P.Seq
ACAACAACAACAACAACAACAACAACAACAACATCAACAACATCAACAACATCAACATCA
ACATCAACAACACCAACACCAACACCAACACCAACACCAACATCAACATCAACAACAACA
ACATCAACAACAAGCCCAACAACAACAACCACACCTACACCAACATCATCAACAACGACA
TCAACACCATCAATACCAACAACAACNACAACGACNACAACNCCNACAACNACNACAACN
ACNACNACNACNACAACNACNACNACNACNACAACNACNACAACNACNACNACANCNACA
NCNACNACAACGACNAC----------AAACCCAAGAAAACAATCAAGAAAACAATCAAG
AAAACAATCAAGAAAATAAAAATAATCAAAGCAAAATTCAACAAGAACAAAATGAAAAAC
AAGAACAAAATGAAAAACAAGAAGTGAATGAAAAACAAGAAGTGAATGAAAAACAAGAAG
TGAATGAAAAACAAGAATTGAATGAAAAACAAGAAGTGAATGAAAAACAAGAAGTGAACG
AAAAACAAGAAGTGAATGAAAAACAAGAACAAAATGAAAAACAAGAAATAAACCAAGAAC
AATTGAGTCAACAAAAGAATGAACAACAAGAAAAATTGAATCAACAAAATAATCAACANC
AAGAAAGAAGTTGAAATAAAACAAAAATAACCAAAAACAAAATAGTAACAATTC
Length of connected seq. 704
Full length Seq ID -
Full length Seq. -
Length of full length seq. -