CHI394
Library CH
(Link to library)
Clone ID CHI394
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16405-1
Original site URL
Representative seq. ID CHI394P
(Link to Original site)
Representative DNA sequence
>CHI394 (CHI394Q) /CSM/CH/CHI3-D/CHI394Q.Seq.d/
AATAAAAATTAAATTTTCCTAAAATAATTAAAATTCTCTTTTTTAATTTTCTTTTATAAA
AATTGTTAAAAAGCCAAATTCAAAATAAAAAAAATCATTGATAAAAATGGAAAAGAAAAT
AATATTACTGATTTTATTTTTGTTCTTTATATCAGGATATTCAATGAATCCTCCAACACC
AATAGATGCAATATATGATGATAAATCATTTACATTAATTTTTAATAGTAATCTCCCATA
TTCTACCCGTTTAATTTTGTATAAAAACGAAAAAGAACCCAGAACTGAAATGGCACCAAA
TTATTTCAATTGTTCTCTAGTTGATGGAGAGAGACATTGTTTATTCCATTCAGATGAACC
ATTCTCAAGATTATGGGGTAGTATAGACAGTAAGGTATGTGTTAGAGATAAATCAAATAC
TGTTGAGGATTGTACATTTGATGCTTCGGGTTTAGTATATTATCCAAAAGTATACAATTT
GAAATATAGTAAAAAAACCAAAAACATCTGGTGAAGATATAGTCATTACTGGCTCATATT
TAAGATTATTTGGTGGTCCTAATTTCCTTATTAATTCCATTGATGTAAATAAACCTTTTG
TTGTXXXXXXXXXXTACAACATTCATTGGAGTTCGTTCAGGACCAAGTACAACATTGACC
TATATAAAACCAATGATTTCAGAAATTCCAACCATTGAAAATAAAATTGAAAAAGGTATT
TTAGCAATAATTCGTGGTTATAGTTTTACAGATATTNTCAATGCAAGCTTAACAGTTTCA
TCAGAAACTGTTCCTNTTTCATGTAATTTAGAATGTAGTTTATCACCAAATGAAATACTT
GATGATAGTGATTCAAGTGAAACTAATATTACAAATAGTAATACTGATTGTTTATCATGC
CATTCCGGTTCAAGTGTGAAAAATACATCAGGAGTATTATATNTCCTATTTAACTCAACA
TCATTTCAATATAATGTCACAATTGAAGAAATTAAATTATNTCCATCACCAAACGTTAGT
CAAANAGATGTTGAAACTAAATCATCCAAACCATCAAATGGTTTAATAATAGGTTNTACA
ATTGGTAGTGTTGGTGGTGCTCTTGCTATCGGTGCTNTTGCCTATTACTTTAAAATACCT
TTTCGTGTGAAAAAATTTATAGGTAAAAAATTTTAAAAAAAAAAATGTAAATTTAAAATC
ACAAATCACATATGTGTAAAATTAAAACTTAACTAAAAATAAAATAAATAAATAAATAAA
TAAATG
sequence update 2002.10.25
Translated Amino Acid sequence
*klnfpkiikilffnfll*kllksqiqnkknh**kwkrk*yy*fyfcslyqdiq*ilqhq
*mqymminhlh*flivishilpv*fciktkknpelkwhqiisivl*lmerdivysiqmnh
sqdygvv*tvryvleinqillrivhlmlrv*yiiqkyti*NIVKKPKTSGEDIVITGSYL
RLFGGPNFLINSIDVNKPFV---

---TTFIGVRSGPSTTLTYIKPMISEIPTIENKIEKGILAIIRGYSFTDIXNASLTVSSE
TVPXSCNLECSLSPNEILDDSDSSETNITNSNTDCLSCHSGSSVKNTSGVLYXLFNSTSF
QYNVTIEEIKLXPSPNVSQXDVETKSSKPSNGLIIGXTIGSVGGALAIGAXAYYFKIPFR
VKKFIGKKF*kkkckfkitnhicvklkln*k*nk*ink*m


Translated Amino Acid sequence (All Frames)
Frame A:
nkn*iflk*lkfsfliffyknc*kakfkikkiidkngkennitdfifvlyirifnessnt
nrcni***iiyinf***spifypfnfv*krkrtqn*ngtklfqlfss*wretlfipfr*t
ilkimg*yrq*gmc*r*ikyc*glyi*cfgfsilsksiqfei**knqkhlvki*sllahi
*dylvvlislliplm*inlll---

---ynihwssfrtkynidlyktndfrnsnh*k*n*kryfsnnswl*fyryxqcklnsfir
ncsxfm*frm*fitk*nt****fk*n*yyk**y*lfimpfrfkcekyirsiixpi*lnii
si*chn*rn*ixsitkr*sxrc*n*iiqtikwfnnrxynw*cwwcscyrcxclll*ntfs
cekiyr*kilkkkm*i*nhkshmckikt*lkik*ink*in

Frame B:
ikikfs*nn*nslf*fsfikivkkpnsk*kkslikmekkiillilflffisgysmnpptp
idaiyddksftlifnsnlpystrlilyknekeprtemapnyfncslvdgerhclfhsdep
fsrlwgsidskvcvrdksntvedctfdasglvyypkvynlkyskktkniw*ryshywlif
kiiwws*fpy*fh*ck*tfcc---

---TTFIGVRSGPSTTLTYIKPMISEIPTIENKIEKGILAIIRGYSFTDIXNASLTVSSE
TVPXSCNLECSLSPNEILDDSDSSETNITNSNTDCLSCHSGSSVKNTSGVLYXLFNSTSF
QYNVTIEEIKLXPSPNVSQXDVETKSSKPSNGLIIGXTIGSVGGALAIGAXAYYFKIPFR
VKKFIGKKF*kkkckfkitnhicvklkln*k*nk*ink*m

Frame C:
*klnfpkiikilffnfll*kllksqiqnkknh**kwkrk*yy*fyfcslyqdiq*ilqhq
*mqymminhlh*flivishilpv*fciktkknpelkwhqiisivl*lmerdivysiqmnh
sqdygvv*tvryvleinqillrivhlmlrv*yiiqkyti*NIVKKPKTSGEDIVITGSYL
RLFGGPNFLINSIDVNKPFV---

---qhslefvqdqvqh*pi*nq*fqkfqplkiklkkvf*q*fvvivlqixsmqa*qfhqk
lflfhvi*nvvyhqmkylmiviqvklilqivilivyhaipvqv*kihqeyyxsyltqhhf
nimsqlkklnyxhhqtlvkxmlklnhpnhqmv***vxqlvvlvvlllsvllpitlkylfv
*knl*vknfkkknvnlksqityv*n*nltknkink*ink

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHI394 (CHI394Q) /CSM/CH/CHI3-D/CHI394Q.Seq.d/ 1899 0.0
SHC854 (SHC854Q) /CSM/SH/SHC8-C/SHC854Q.Seq.d/ 1883 0.0
SHJ608 (SHJ608Q) /CSM/SH/SHJ6-A/SHJ608Q.Seq.d/ 1019 0.0
SHJ589 (SHJ589Q) /CSM/SH/SHJ5-D/SHJ589Q.Seq.d/ 1019 0.0
SHE141 (SHE141Q) /CSM/SH/SHE1-B/SHE141Q.Seq.d/ 1019 0.0
SHD314 (SHD314Q) /CSM/SH/SHD3-A/SHD314Q.Seq.d/ 1019 0.0
SHC758 (SHC758Q) /CSM/SH/SHC7-C/SHC758Q.Seq.d/ 1019 0.0
SHC478 (SHC478Q) /CSM/SH/SHC4-D/SHC478Q.Seq.d/ 1019 0.0
SHC410 (SHC410Q) /CSM/SH/SHC4-A/SHC410Q.Seq.d/ 1019 0.0
SHC243 (SHC243Q) /CSM/SH/SHC2-B/SHC243Q.Seq.d/ 1019 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U09478|U09478.1 Dictyostelium discoideum KAx-3 LagC protein (lagC) mRNA, complete cds. 1019 0.0 3
AF258615|AF258615.1 Dictyostelium discoideum LagC protein (lagC) gene, complete cds. 1019 0.0 4
AB032076|AB032076.1 Dictyostelium discoideum mRNA for lagC2, complete cds. 74 3e-24 5
AE017263|AE017263.1 Mesoplasma florum L1 complete genome. 34 6e-04 22
AL929357|AL929357.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5. 34 0.001 15
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence. 38 0.002 13
U30821|U30821.1 Cyanophora paradoxa cyanelle, complete genome. 36 0.005 9
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 46 0.005 15
AL935175|AL935175.6 Mouse DNA sequence from clone RP23-397E13 on chromosome 2. 38 0.011 8
AE014820|AE014820.1 Plasmodium falciparum 3D7 chromosome 14 section 5 of 13 of the complete sequence. 34 0.014 13
dna update 2004.12. 3
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

A54280(A54280) cell differentiation protein LagC precursor - sli... 309 1e-82
FJ374927_1(FJ374927|pid:none) Dictyostelium discoideum strain QS... 299 1e-79
FJ374925_1(FJ374925|pid:none) Dictyostelium discoideum strain QS... 299 1e-79
FJ374948_1(FJ374948|pid:none) Dictyostelium discoideum strain QS... 299 1e-79
FJ374933_1(FJ374933|pid:none) Dictyostelium discoideum strain QS... 299 1e-79
FJ374923_1(FJ374923|pid:none) Dictyostelium discoideum strain QS... 299 1e-79
FJ374941_1(FJ374941|pid:none) Dictyostelium discoideum strain QS... 298 2e-79
FJ374928_1(FJ374928|pid:none) Dictyostelium discoideum strain QS... 286 1e-75
FJ374930_1(FJ374930|pid:none) Dictyostelium discoideum strain QS... 286 1e-75
FJ374951_1(FJ374951|pid:none) Dictyostelium discoideum strain QS... 286 1e-75
protein update 2009. 4. 2
PSORT

psg: 0.77 gvh: 0.44 alm: 0.33 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.08 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
36.0 %: nuclear
12.0 %: mitochondrial
8.0 %: vacuolar
4.0 %: endoplasmic reticulum
4.0 %: peroxisomal

>> prediction for CHI394 is cyt

5' end seq. ID CHI394F
5' end seq.
>CHI394F.Seq
AATAAAAATTAAATTTTCCTAAAATAATTAAAATTCTCTTTTTTAATTTTCTTTTATAAA
AATTGTTAAAAAGCCAAATTCAAAATAAAAAAAATCATTGATAAAAATGGAAAAGAAAAT
AATATTACTGATTTTATTTTTGTTCTTTATATCAGGATATTCAATGAATCCTCCAACACC
AATAGATGCAATATATGATGATAAATCATTTACATTAATTTTTAATAGTAATCTCCCATA
TTCTACCCGTTTAATTTTGTATAAAAACGAAAAAGAACCCAGAACTGAAATGGCACCAAA
TTATTTCAATTGTTCTCTAGTTGATGGAGAGAGACATTGTTTATTCCATTCAGATGAACC
ATTCTCAAGATTATGGGGTAGTATAGACAGTAAGGTATGTGTTAGAGATAAATCAAATAC
TGTTGAGGATTGTACATTTGATGCTTCGGGTTTAGTATATTATCCAAAAGTATACAATTT
GAAATATAGTAAAAAAACCAAAAACATCTGGTGAAGATATAGTCATTACTGGCTCATATT
TAAGATTATTTGGTGGTCCTAATTTCCTTATTAATTCCATTGATGTAAATAAACCTTTTG
TTGTNNNNNNNNNN
Length of 5' end seq. 614
3' end seq. ID CHI394Z
3' end seq.
>CHI394Z.Seq
NNNNNNNNNNTACAACATTCATTGGAGTTCGTTCAGGACCAAGTACAACATTGACCTATA
TAAAACCAATGATTTCAGAAATTCCAACCATTGAAAATAAAATTGAAAAAGGTATTTTAG
CAATAATTCGTGGTTATAGTTTTACAGATATTNTCAATGCAAGCTTAACAGTTTCATCAG
AAACTGTTCCTNTTTCATGTAATTTAGAATGTAGTTTATCACCAAATGAAATACTTGATG
ATAGTGATTCAAGTGAAACTAATATTACAAATAGTAATACTGATTGTTTATCATGCCATT
CCGGTTCAAGTGTGAAAAATACATCAGGAGTATTATATNTCCTATTTAACTCAACATCAT
TTCAATATAATGTCACAATTGAAGAAATTAAATTATNTCCATCACCAAACGTTAGTCAAA
NAGATGTTGAAACTAAATCATCCAAACCATCAAATGGTTTAATAATAGGTTNTACAATTG
GTAGTGTTGGTGGTGCTCTTGCTATCGGTGCTNTTGCCTATTACTTTAAAATACCTTTTC
GTGTGAAAAAATTTATAGGTAAAAAATTTTAAAAAAAAAAATGTAAATTTAAAATCACAA
ATCACATATGTGTAAAATTAAAACTTAACTAAAAATAAAATAAATAAATAAATAAATAAA
TG
Length of 3' end seq. 662
Connected seq. ID CHI394P
Connected seq.
>CHI394P.Seq
AATAAAAATTAAATTTTCCTAAAATAATTAAAATTCTCTTTTTTAATTTTCTTTTATAAA
AATTGTTAAAAAGCCAAATTCAAAATAAAAAAAATCATTGATAAAAATGGAAAAGAAAAT
AATATTACTGATTTTATTTTTGTTCTTTATATCAGGATATTCAATGAATCCTCCAACACC
AATAGATGCAATATATGATGATAAATCATTTACATTAATTTTTAATAGTAATCTCCCATA
TTCTACCCGTTTAATTTTGTATAAAAACGAAAAAGAACCCAGAACTGAAATGGCACCAAA
TTATTTCAATTGTTCTCTAGTTGATGGAGAGAGACATTGTTTATTCCATTCAGATGAACC
ATTCTCAAGATTATGGGGTAGTATAGACAGTAAGGTATGTGTTAGAGATAAATCAAATAC
TGTTGAGGATTGTACATTTGATGCTTCGGGTTTAGTATATTATCCAAAAGTATACAATTT
GAAATATAGTAAAAAAACCAAAAACATCTGGTGAAGATATAGTCATTACTGGCTCATATT
TAAGATTATTTGGTGGTCCTAATTTCCTTATTAATTCCATTGATGTAAATAAACCTTTTG
TTGT----------TACAACATTCATTGGAGTTCGTTCAGGACCAAGTACAACATTGACC
TATATAAAACCAATGATTTCAGAAATTCCAACCATTGAAAATAAAATTGAAAAAGGTATT
TTAGCAATAATTCGTGGTTATAGTTTTACAGATATTNTCAATGCAAGCTTAACAGTTTCA
TCAGAAACTGTTCCTNTTTCATGTAATTTAGAATGTAGTTTATCACCAAATGAAATACTT
GATGATAGTGATTCAAGTGAAACTAATATTACAAATAGTAATACTGATTGTTTATCATGC
CATTCCGGTTCAAGTGTGAAAAATACATCAGGAGTATTATATNTCCTATTTAACTCAACA
TCATTTCAATATAATGTCACAATTGAAGAAATTAAATTATNTCCATCACCAAACGTTAGT
CAAANAGATGTTGAAACTAAATCATCCAAACCATCAAATGGTTTAATAATAGGTTNTACA
ATTGGTAGTGTTGGTGGTGCTCTTGCTATCGGTGCTNTTGCCTATTACTTTAAAATACCT
TTTCGTGTGAAAAAATTTATAGGTAAAAAATTTTAAAAAAAAAAATGTAAATTTAAAATC
ACAAATCACATATGTGTAAAATTAAAACTTAACTAAAAATAAAATAAATAAATAAATAAA
TAAATG
Length of connected seq. 1256
Full length Seq ID -
Full length Seq. -
Length of full length seq. -