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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHI343
Library CH
(Link to library)
Clone ID CHI343
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10739-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHI343 (CHI343Q) /CSM/CH/CHI3-B/CHI343Q.Seq.d/
ATACACATTTCAACCTACATTGAAGAATCTCTTGTGAATAAAAAAAAACTAAATAAAAAA
AAAAAAAAAAAATTTANTAANTAAAAAANTAAANTAAAAAAAAAAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
IHISTYIEESLVNKKKLNKKKKKKFXX*kxkxkk---
Translated Amino Acid sequence (All Frames) 
Frame A:
IHISTYIEESLVNKKKLNKKKKKKFXX*kxkxkk---


Frame B:
ytfqptlknll*ikkn*ikkkkknlxxkkxx*kk---


Frame C:
thfnlh*risce*kktk*kkkkkix*xkx*xkkk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHI343 (CHI343Q) /CSM/CH/CHI3-B/CHI343Q.Seq.d/                         78   3e-14
CHF651 (CHF651Q) /CSM/CH/CHF6-C/CHF651Q.Seq.d/                         78   3e-14
AFB641 (AFB641Q) /CSM/AF/AFB6-B/AFB641Q.Seq.d/                         78   3e-14
AHO589 (AHO589Q) /CSM/AH/AHO5-D/AHO589Q.Seq.d/                         74   5e-13
own update 2002.11.22
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    78   3e-11  1
T05782|T05782.1 EST03671 Fetal brain, Stratagene (cat#936206) Homo sapiens cDNA clone HFBDG33, mRNA sequence.    40   6.7    1
dna update 2003. 4.10
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 50,823,208
protein update 2009. 4. 2
PSORT 

 psg: 0.75  gvh: 0.05  alm: 0.64  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.36  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: mitochondrial

>> prediction for CHI343 is nuc
5' end seq. ID CHI343F
5' end seq. 
>CHI343F.Seq
ATACACATTTCAACCTACATTGAAGAATCTCTTGTGAATAAAAAAAAACTAAATAAAAAA
AAAAAAAAAAAATTTANTAANTAAAAAANTAAANTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 115
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -