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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHI316
Library CH
(Link to library)
Clone ID CHI316
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14344-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHI316 (CHI316Q) /CSM/CH/CHI3-A/CHI316Q.Seq.d/
XXXXXXXXXXATTNACCTTTAAATTCACCTTTTCCATNTTTNCAATCNCCAGTTAANAAT
TATNCNAATNAATTNTTTTTNCCNNAAAATNATNATTNACCAAATCAACNANAACAACAA
NAAC
sequence update 2002. 9.10
Translated Amino Acid sequence 
---XPLNSPFPXXQSPVXNYXNXXFXPXNXXXPNQXXQQX
Translated Amino Acid sequence (All Frames) 
Frame A:
---xtfkftfsxfxixs*xlxxxixfxxkxxxtkstxttx


Frame B:
---XPLNSPFPXXQSPVXNYXNXXFXPXNXXXPNQXXQQX


Frame C:
---xl*ihlfhxxnxqlxixxxnxfxxkxxixqinxnnxn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHI316 (CHI316Q) /CSM/CH/CHI3-A/CHI316Q.Seq.d/                         78   3e-14
CHI264 (CHI264Q) /CSM/CH/CHI2-C/CHI264Q.Seq.d/                         34   0.43
VSD222 (VSD222Q) /CSM/VS/VSD2-A/VSD222Q.Seq.d/                         32   1.7
VFK433 (VFK433Q) /CSM/VF/VFK4-B/VFK433Q.Seq.d/                         32   1.7
VFF547 (VFF547Q) /CSM/VF/VFF5-B/VFF547Q.Seq.d/                         32   1.7
VFA240 (VFA240Q) /CSM/VF/VFA2-B/VFA240Q.Seq.d/                         32   1.7
SSF710 (SSF710Q) /CSM/SS/SSF7-A/SSF710Q.Seq.d/                         32   1.7
SLE112 (SLE112Q) /CSM/SL/SLE1-A/SLE112Q.Seq.d/                         32   1.7
SLA102 (SLA102Q) /CSM/SL/SLA1-A/SLA102Q.Seq.d/                         32   1.7
SFI104 (SFI104Q) /CSM/SF/SFI1-A/SFI104Q.Seq.d/                         32   1.7
own update 2002.11.22
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CC279102|CC279102.1 CH261-135P4_RM1.1 CH261 Gallus gallus genomic clone CH261-135P4,genomic survey sequence.    40   7.3    1
dna update 2004.12. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116551_8(AC116551|pid:none) Dictyostelium discoideum chromosom...    37   0.21
protein update 2009. 1. 2
PSORT 

 psg: 0.78  gvh: 0.36  alm: 0.69  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: mitochondrial
	 28.0 %: nuclear
	 24.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for CHI316 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHI316Z
3' end seq. 
>CHI316Z.Seq
NNNNNNNNNNATTNACCTTTAAATTCACCTTTTCCATNTTTNCAATCNCCAGTTAANAAT
TATNCNAATNAATTNTTTTTNCCNNAAAATNATNATTNACCAAATCAACNANAACAACAA
NAAC
Length of 3' end seq. 124
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -