AFG212
Library AF
(Link to library)
Clone ID AFG212
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16709-1
Original site URL
Representative seq. ID AFG212P
(Link to Original site)
Representative DNA sequence
>AFG212 (AFG212Q) /CSM/AF/AFG2-A/AFG212Q.Seq.d/
CAAAGAAAGAAAATAATTATTATTATAAAAAATGGCGATAGAAGAAGAATCATCAAATTC
TGGTGTATCAACATCAATTGATAATTTAGGGTCATCAATTGATGGAAAGGGTTCATCTAA
AGGTAAACAAGGTGATATGGAAGGTATTGATAATGAAGTTTTTGTTTATGGAGGGGATGA
AAATCATTTTCCATCATCAATTAAATATATTATGGGTAATGAAATTTGTGAAAGGTATTC
ATACTATGCTTTAAGAGGTATTTTAACAAATTATTTAATCAGTTTCATGGGATATTCTGA
AAAAAATGCTTCTTCAATTGGTCACGGTTTTAATGCTGGTGCTTATATTTTTTCACTTGT
TGGTGCTTATGTTGCTGATGGTGTTTTAGGAAAATACAAAACAATTTTATATTTCAGTAT
TTTATATTGTTTTGGAGCTGCTATTTTTTCAATTACTGCAATTCCAGGAATTACTGGTGA
CAGTCCAGGTGAAAGATCACCATGGGGTTTAATTGTTGGTTTAACTTGTATTGCAATTGG
TACAGGTGGTATTAAACCAGTTGTAAGTTCATTTTGTGGTGATCAATTTGGTCCACATCA
AAAGAAATTACTTCAAAATCTTTTCCAAGTATTTTATTGGTGTGTAAATTTAGGATCATT
CTTTTCATCXXXXXXXXXXGAAATTGATTCTGAAATTATCAATTGTATTAATCCATTATT
GGTTATGATTTTCGTACCAATCTTTGAAATATGGTATTTATCGTCCATTGGAAAGAAAGA
AGATTAATTTCACACTCCTTCGTAGAATGGGTACCGGTATGTTTTTGTCTGTGATTGCAT
TTTACATTTCAGCTATTATTCAAGTTCATATTGATAACTCTCCACCAGAATCTGTACATA
TCGCTTTACAAATACCACAATATGTTGTCTTGACTGCCGCTGAAGTTTTATTATCAATCA
CTGGTTTAGAATTTGCCTATGCAAATTCACCACGTTCTATGAAATCATTGGTAATTGCAG
GTTGGTTAATTTGTGTTTCCATTGGTAATATGTTTGATGCTTTTGTAATTGAATTAATTG
AATTACCAGAATATGTTTTATCATTATTATTTGGTTCTGTAATGTTTGTATTCATCTTTA
TCTTTATCATTATTGCCTATAGATTCAAAGAAATTGATCAATCAGTTTTGGATGAATTAA
ATGGTGATACTCCAATGACTGATGATAATGCTAATGCTAATTCCAAAGAATTAGATGTTG
TAACTCAAAAAGATTTATCATCTTCTTCAAATCCAATTATTAATAATAATAACAATAATA
ATAACTCAACTTTGGGTAATAGTAT
sequence update 2001. 6. 2
Translated Amino Acid sequence
kerk*lll*KMAIEEESSNSGVSTSIDNLGSSIDGKGSSKGKQGDMEGIDNEVFVYGGDE
NHFPSSIKYIMGNEICERYSYYALRGILTNYLISFMGYSEKNASSIGHGFNAGAYIFSLV
GAYVADGVLGKYKTILYFSILYCFGAAIFSITAIPGITGDSPGERSPWGLIVGLTCIAIG
TGGIKPVVSSFCGDQFGPHQKKLLQNLFQVFYWCVNLGSFFS---

---EIDSEIINCINPLLVMIFVPIFEIWYLSSIGKKED*fhtps*ngyryvfvcdcilhf
syysssy**lstrictyrftntticcldcr*sfiinhwfriclckfttfyeiigncrlvn
lcfhw*yv*cfcn*in*itricfiiiiwfcnvcihlylyhycl*iqrn*sisfg*ikw*y
snd***c*c*fqrirccnskrfiiffksny****q***lnfg**y


Translated Amino Acid sequence (All Frames)
Frame A:
qrkkiiiiikngdrrriikfwcinin**frvin*wkgfi*r*tr*ygry***sfclwrg*
ksfsiin*iyyg**nl*kvfilcfkryfnklfnqfhgif*kkcffnwsrf*cwclyfftc
wclcc*wcfrkiqnnfifqyfilfwscyffnycnsrnyw*qsr*kitmgfncwfnlycnw
yrwy*tsckfilw*siwstskeitsksfpsillvckfriilfi---

---EIDSEIINCINPLLVMIFVPIFEIWYLSSIGKKED*fhtps*ngyryvfvcdcilhf
syysssy**lstrictyrftntticcldcr*sfiinhwfriclckfttfyeiigncrlvn
lcfhw*yv*cfcn*in*itricfiiiiwfcnvcihlylyhycl*iqrn*sisfg*ikw*y
snd***c*c*fqrirccnskrfiiffksny****q***lnfg**y

Frame B:
kerk*lll*KMAIEEESSNSGVSTSIDNLGSSIDGKGSSKGKQGDMEGIDNEVFVYGGDE
NHFPSSIKYIMGNEICERYSYYALRGILTNYLISFMGYSEKNASSIGHGFNAGAYIFSLV
GAYVADGVLGKYKTILYFSILYCFGAAIFSITAIPGITGDSPGERSPWGLIVGLTCIAIG
TGGIKPVVSSFCGDQFGPHQKKLLQNLFQVFYWCVNLGSFFS---

---klilklsivlihywl*fsyqslkygiyrplerkkinftllrrmgtgmflsviafyis
aiiqvhidnsppesvhialqipqyvvltaaevllsitglefayansprsmkslviagwli
cvsignmfdafvielielpeyvlsllfgsvmfvfififiiiayrfkeidqsvldelngdt
pmtddnananskeldvvtqkdlssssnpiinnnnnnnnstlgns

Frame C:
kkennyyykkwr*kknhqilvyqhqlii*ghqlmervhlkvnkviwkvlimkflfmegmk
iifhhqlnilwvmkfvkgihtml*evf*qii*svswdilkkmllqlvtvlmlvliffhll
vlmllmvf*entkqfyisvfyivlellffqllqfqellvtvqvkdhhgv*llv*lvlqlv
qvvlnql*vhfvvinlvhikrnyfkifskyfigv*i*dhsfh---

---n*f*nyqly*siigydfrtnl*nmvfivhwkerrlishsfvewvpvcfcl*lhftfq
llfkfilitlhqnlyislykyhnmls*lplkfyyqslv*nlpmqihhvl*nhw*lqvg*f
vfplviclmll*ln*lnyqnmfyhyylvl*clysslslsllpidskklinqfwmn*mvil
q*lmimlmlipkn*ml*lkkiyhllqiqlliiitiiitqlwviv

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFG212 (AFG212Q) /CSM/AF/AFG2-A/AFG212Q.Seq.d/ 2476 0.0
AFN577 (AFN577Q) /CSM/AF/AFN5-D/AFN577Q.Seq.d/ 1223 0.0
SFD148 (SFD148Q) /CSM/SF/SFD1-B/SFD148Q.Seq.d/ 1215 0.0
CHA272 (CHA272Q) /CSM/CH/CHA2-C/CHA272Q.Seq.d/ 1215 0.0
CFI809 (CFI809Q) /CSM/CF/CFI8-A/CFI809Q.Seq.d/ 1215 0.0
CFI287 (CFI287Q) /CSM/CF/CFI2-D/CFI287Q.Seq.d/ 1215 0.0
CFC357 (CFC357Q) /CSM/CF/CFC3-C/CFC357Q.Seq.d/ 1215 0.0
AFO369 (AFO369Q) /CSM/AF/AFO3-C/AFO369Q.Seq.d/ 1215 0.0
AFF251 (AFF251Q) /CSM/AF/AFF2-C/AFF251Q.Seq.d/ 1215 0.0
VFD441 (VFD441Q) /CSM/VF/VFD4-B/VFD441Q.Seq.d/ 1207 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC115680|AC115680.3 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence. 1096 0.0 12
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 141 e-106 24
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 36 2e-10 24
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 34 3e-08 27
AP006628|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome. 40 3e-07 30
AL929353|AL929353.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4. 34 6e-07 21
AE014845|AE014845.1 Plasmodium falciparum 3D7 chromosome 12, section 2 of 9 of the complete sequence. 36 1e-06 16
AE014823|AE014823.1 Plasmodium falciparum 3D7 chromosome 14 section 8 of 13 of the complete sequence. 42 1e-06 18
AE014017|AE014017.1 Buchnera aphidicola str. Bp (Baizongia pistaciae), section 2 of 2 of the complete genome. 40 1e-06 19
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 36 1e-06 21
dna update 2004. 5. 6
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC115680_27(AC115680|pid:none) Dictyostelium discoideum chromoso... 407 e-112
BT031310_1(BT031310|pid:none) Drosophila melanogaster GH01855 fu... 150 1e-34
AE014298_589(AE014298|pid:none) Drosophila melanogaster chromoso... 150 1e-34
AE014298_588(AE014298|pid:none) Drosophila melanogaster chromoso... 150 1e-34
(Q95TX0) RecName: Full=Oligopeptide transporter 1; AltName: Full... 150 1e-34
CP000769_400(CP000769|pid:none) Anaeromyxobacter sp. Fw109-5, co... 144 5e-33
CP000113_2541(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 144 9e-33
CP000383_1575(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334... 144 9e-33
U85982_1(U85982|pid:none) Drosophila melanogaster oligopeptide t... 144 9e-33
AB455540_1(AB455540|pid:none) Salmo salar PepT1 mRNA for solute ... 135 3e-30
protein update 2009. 4.20
PSORT

psg: 0.75 gvh: 0.31 alm: 0.25 top: 0.40 tms: 0.20 mit: 0.25 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

40.0 %: endoplasmic reticulum
32.0 %: plasma membrane
8.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vesicles of secretory system
4.0 %: peroxisomal
4.0 %: cytoplasmic

>> prediction for AFG212 is end

5' end seq. ID AFG212F
5' end seq.
>AFG212F.Seq
CAAAGAAAGAAAATAATTATTATTATAAAAAATGGCGATAGAAGAAGAATCATCAAATTC
TGGTGTATCAACATCAATTGATAATTTAGGGTCATCAATTGATGGAAAGGGTTCATCTAA
AGGTAAACAAGGTGATATGGAAGGTATTGATAATGAAGTTTTTGTTTATGGAGGGGATGA
AAATCATTTTCCATCATCAATTAAATATATTATGGGTAATGAAATTTGTGAAAGGTATTC
ATACTATGCTTTAAGAGGTATTTTAACAAATTATTTAATCAGTTTCATGGGATATTCTGA
AAAAAATGCTTCTTCAATTGGTCACGGTTTTAATGCTGGTGCTTATATTTTTTCACTTGT
TGGTGCTTATGTTGCTGATGGTGTTTTAGGAAAATACAAAACAATTTTATATTTCAGTAT
TTTATATTGTTTTGGAGCTGCTATTTTTTCAATTACTGCAATTCCAGGAATTACTGGTGA
CAGTCCAGGTGAAAGATCACCATGGGGTTTAATTGTTGGTTTAACTTGTATTGCAATTGG
TACAGGTGGTATTAAACCAGTTGTAAGTTCATTTTGTGGTGATCAATTTGGTCCACATCA
AAAGAAATTACTTCAAAATCTTTTCCAAGTATTTTATTGGTGTGTAAATTTAGGATCATT
CTTTTCATC----------
Length of 5' end seq. 669
3' end seq. ID AFG212Z
3' end seq.
>AFG212Z.Seq
----------GAAATTGATTCTGAAATTATCAATTGTATTAATCCATTATTGGTTATGAT
TTTCGTACCAATCTTTGAAATATGGTATTTATCGTCCATTGGAAAGAAAGAAGATTAATT
TCACACTCCTTCGTAGAATGGGTACCGGTATGTTTTTGTCTGTGATTGCATTTTACATTT
CAGCTATTATTCAAGTTCATATTGATAACTCTCCACCAGAATCTGTACATATCGCTTTAC
AAATACCACAATATGTTGTCTTGACTGCCGCTGAAGTTTTATTATCAATCACTGGTTTAG
AATTTGCCTATGCAAATTCACCACGTTCTATGAAATCATTGGTAATTGCAGGTTGGTTAA
TTTGTGTTTCCATTGGTAATATGTTTGATGCTTTTGTAATTGAATTAATTGAATTACCAG
AATATGTTTTATCATTATTATTTGGTTCTGTAATGTTTGTATTCATCTTTATCTTTATCA
TTATTGCCTATAGATTCAAAGAAATTGATCAATCAGTTTTGGATGAATTAAATGGTGATA
CTCCAATGACTGATGATAATGCTAATGCTAATTCCAAAGAATTAGATGTTGTAACTCAAA
AAGATTTATCATCTTCTTCAAATCCAATTATTAATAATAATAACAATAATAATAACTCAA
CTTTGGGTAATAGTAT
Length of 3' end seq. 666
Connected seq. ID AFG212P
Connected seq.
>AFG212P.Seq
CAAAGAAAGAAAATAATTATTATTATAAAAAATGGCGATAGAAGAAGAATCATCAAATTC
TGGTGTATCAACATCAATTGATAATTTAGGGTCATCAATTGATGGAAAGGGTTCATCTAA
AGGTAAACAAGGTGATATGGAAGGTATTGATAATGAAGTTTTTGTTTATGGAGGGGATGA
AAATCATTTTCCATCATCAATTAAATATATTATGGGTAATGAAATTTGTGAAAGGTATTC
ATACTATGCTTTAAGAGGTATTTTAACAAATTATTTAATCAGTTTCATGGGATATTCTGA
AAAAAATGCTTCTTCAATTGGTCACGGTTTTAATGCTGGTGCTTATATTTTTTCACTTGT
TGGTGCTTATGTTGCTGATGGTGTTTTAGGAAAATACAAAACAATTTTATATTTCAGTAT
TTTATATTGTTTTGGAGCTGCTATTTTTTCAATTACTGCAATTCCAGGAATTACTGGTGA
CAGTCCAGGTGAAAGATCACCATGGGGTTTAATTGTTGGTTTAACTTGTATTGCAATTGG
TACAGGTGGTATTAAACCAGTTGTAAGTTCATTTTGTGGTGATCAATTTGGTCCACATCA
AAAGAAATTACTTCAAAATCTTTTCCAAGTATTTTATTGGTGTGTAAATTTAGGATCATT
CTTTTCATC----------GAAATTGATTCTGAAATTATCAATTGTATTAATCCATTATT
GGTTATGATTTTCGTACCAATCTTTGAAATATGGTATTTATCGTCCATTGGAAAGAAAGA
AGATTAATTTCACACTCCTTCGTAGAATGGGTACCGGTATGTTTTTGTCTGTGATTGCAT
TTTACATTTCAGCTATTATTCAAGTTCATATTGATAACTCTCCACCAGAATCTGTACATA
TCGCTTTACAAATACCACAATATGTTGTCTTGACTGCCGCTGAAGTTTTATTATCAATCA
CTGGTTTAGAATTTGCCTATGCAAATTCACCACGTTCTATGAAATCATTGGTAATTGCAG
GTTGGTTAATTTGTGTTTCCATTGGTAATATGTTTGATGCTTTTGTAATTGAATTAATTG
AATTACCAGAATATGTTTTATCATTATTATTTGGTTCTGTAATGTTTGTATTCATCTTTA
TCTTTATCATTATTGCCTATAGATTCAAAGAAATTGATCAATCAGTTTTGGATGAATTAA
ATGGTGATACTCCAATGACTGATGATAATGCTAATGCTAATTCCAAAGAATTAGATGTTG
TAACTCAAAAAGATTTATCATCTTCTTCAAATCCAATTATTAATAATAATAACAATAATA
ATAACTCAACTTTGGGTAATAGTAT
Length of connected seq. 1335
Full length Seq ID -
Full length Seq. -
Length of full length seq. -