NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHI251
Library CH
(Link to library)
Clone ID CHI251
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15079-1
Original site URL
Representative seq. ID CHI251P
(Link to Original site)
Representative DNA sequence 
>CHI251 (CHI251Q) /CSM/CH/CHI2-C/CHI251Q.Seq.d/
CAAATACACAATGGCCATCGATAAATCCNAAAGATTCTTAAGAAAGACCGGTAGAAAGAC
TTTANTCTCTCAAAATCCATACCATGCACTCTTAGTCAAATTATACCGTTTCTTAGCCCG
TAGAACCAACTCCAAGTTCAACAAGGTTGTCTTAAAGAGATTATTACAAACTAAAACCAA
TAGACCACCAGTTTCAATCTCAAGAATTGCCAATTTAATGAAGGACAGAAAGAGCGGTAA
GATTGCTGTTTGTGTTGGTACCGTTGTTGATGATGAAAGATTATTANACTGCCCAAAACT
CACTGTTTGTGCATTAAGATTCACTGAAACTGCTCGTTCAAGAATCGTCAAAGCTGGNGG
TAAAGCATTATCTTTCGATCAATTCGCTTTAGTTAGACCAAGAGGTAACAACACTTTCTT
AATCAAAGGTGTTACCAAAGCTAGAGAAGTCTACAAACATTTCGGTAGAGCTCCAGGTTT
ACCAGGTTCCCATGCTCGTCCTTATGTCCGTXXXXXXXXXXGTTAGTTTTCTCAAATACA
CAATGGCCATCGATAAATCCAAAAGATTCTTAAGAAAGACCGGTAGAAAGACTTTAGTCT
CTCAAAATCCATACCATGCACTNTTAGTCAAATTATACCGTTTCTTAGCCCGTAGAGCCA
ACTCCAAGTTCAACAAGGTTGTCTTAAAGAGATTATTACNAACTAAAACCAATAGACCAC
CAGTTTCAATCTCAAGAATTGCCAATTTAATGAAGGACAGAAAGAGCGGTAAGATTGCTG
TTTGTGTTGGTACCGTTGTTGATGATNAAAGATTATTAGACTGCCCAAAACTCACTGTTT
GTGCATTAAGATTCACTGAAACTGCTCGTTCAAGAATCGTCAAAGCTGGTGGTAAAGCAT
TATCTTTCGATCAATTCGCTTTAGTTAGACCAAGAGGTANCAACACTTTNTTAATCAA
sequence update 2002.10.25
Translated Amino Acid sequence 
KYTMAIDKSXRFLRKTGRKTLXSQNPYHALLVKLYRFLARRTNSKFNKVVLKRLLQTKTN
RPPVSISRIANLMKDRKSGKIAVCVGTVVDDERLLXCPKLTVCALRFTETARSRIVKAGG
KALSFDQFALVRPRGNNTFLIKGVTKAREVYKHFGRAPGLPGSHARPYVR---

---VSFLKYTMAIDKSKRFLRKTGRKTLVSQNPYHALLVKLYRFLARRANSKFNKVVLKR
LLXTKTNRPPVSISRIANLMKDRKSGKIAVCVGTVVDDXRLLDCPKLTVCALRFTETARS
RIVKAGGKALSFDQFALVRPRGXNTXLI
Translated Amino Acid sequence (All Frames) 
Frame A:
qihnghr*ixkilkkdr*kdfxlsksipctlsqiipflsp*nqlqvqqgclkeiitn*nq
*ttsfnlkncqfnegqker*dcclcwyrc***kiixlpkthclcikih*ncsfknrqswx
*siifrsirfs*tkr*qhflnqrcyqs*rslqtfr*ssrftrfpcsslcp---

---VSFLKYTMAIDKSKRFLRKTGRKTLVSQNPYHALLVKLYRFLARRANSKFNKVVLKR
LLXTKTNRPPVSISRIANLMKDRKSGKIAVCVGTVVDDXRLLDCPKLTVCALRFTETARS
RIVKAGGKALSFDQFALVRPRGXNTXLI

Frame B:
KYTMAIDKSXRFLRKTGRKTLXSQNPYHALLVKLYRFLARRTNSKFNKVVLKRLLQTKTN
RPPVSISRIANLMKDRKSGKIAVCVGTVVDDERLLXCPKLTVCALRFTETARSRIVKAGG
KALSFDQFALVRPRGNNTFLIKGVTKAREVYKHFGRAPGLPGSHARPYVR---

---lvfsntqwpsinpkds*erpverl*slkihtmhx*snytvs*pveptpsstrls*rd
yyxlkpidhqfqsqelpi**rteravrllfvlvpllmxkdy*taqnslfvh*dslkllvq
essklvvkhylsinsl*ldqevxtlx*s

Frame C:
ntqwpsinpkds*erpverlxslkihtmhs*snytvs*pveptpsstrls*rdyyklkpi
dhqfqsqelpi**rteravrllfvlvpllmmkdyxtaqnslfvh*dslkllvqessklxv
khylsinsl*ldqevttls*skvlpklekstnisvelqvyqvpmlvlms---

---*fsqihnghr*iqkilkkdr*kdfslsksipctxsqiipflsp*sqlqvqqgclkei
itn*nq*ttsfnlkncqfnegqker*dcclcwyrc**xkiirlpkthclcikih*ncsfk
nrqsww*siifrsirfs*tkrxqhfxnq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHI251 (CHI251Q) /CSM/CH/CHI2-C/CHI251Q.Seq.d/                       1786   0.0
VSJ710 (VSJ710Q) /CSM/VS/VSJ7-A/VSJ710Q.Seq.d/                        989   0.0
VSJ340 (VSJ340Q) /CSM/VS/VSJ3-B/VSJ340Q.Seq.d/                        989   0.0
VSI379 (VSI379Q) /CSM/VS/VSI3-D/VSI379Q.Seq.d/                        989   0.0
VSH755 (VSH755Q) /CSM/VS/VSH7-C/VSH755Q.Seq.d/                        989   0.0
VSE355 (VSE355Q) /CSM/VS/VSE3-C/VSE355Q.Seq.d/                        989   0.0
VSD895 (VSD895Q) /CSM/VS/VSD8-D/VSD895Q.Seq.d/                        989   0.0
VSD778 (VSD778Q) /CSM/VS/VSD7-D/VSD778Q.Seq.d/                        989   0.0
VSD169 (VSD169Q) /CSM/VS/VSD1-C/VSD169Q.Seq.d/                        989   0.0
VSD156 (VSD156Q) /CSM/VS/VSD1-C/VSD156Q.Seq.d/                        989   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BQ621923|BQ621923.1 fch1c.pk002.k1 Conidiobolus cornatus ARSEF 512 Conidioboluscoronatus cDNA, mRNA sequence.    44   3e-07  2
AX829376|AX829376.1 Sequence 96 from Patent WO03072602.            36   0.014  2
AX818346|AX818346.1 Sequence 96 from Patent EP1338608.             36   0.014  2
T37896|T37896.1 EST103190 S. cerevisiae strain X2180-1A Saccharomyces cerevisiae cDNA 5' end, mRNA sequence.    36   0.015  2
AL918374|AL918374.1 Danio rerio EST sequence, clone 047-C06-2.     48   0.27   1
X01099|X01099.1 Yeast first copy gene for ribosomal protein rp 28.    38   0.41   2
Z74862|Z74862.1 S.cerevisiae chromosome XV reading frame ORF YOL120c.    38   0.55   2
X02635|X02635.1 Yeast first copy genes for ribosomal proteins rp28 and S16A (sce-1).    38   0.73   2
T36679|T36679.1 EST101659 S. cerevisiae strain X2180-1A Saccharomyces cerevisiae cDNA 5' end, mRNA sequence.    34   0.78   2
BZ347716|BZ347716.1 ho33d09.g2 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum bicolor genomic clone ho33d09 5', DNA sequence.    46   1.1    1
dna update 2004.12. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54VZ4) RecName: Full=60S ribosomal protein L18;                     325   2e-87
AY857431_1(AY857431|pid:none) Suberites domuncula L18 mRNA, comp...   191   2e-47
EU116900_1(EU116900|pid:none) Barentsia elongata putative riboso...   191   2e-47
EU302542_1(EU302542|pid:none) Lineus viridis ribosomal protein r...   191   3e-47
(P35980) RecName: Full=60S ribosomal protein L18;  &AK009044_1(A...   189   1e-46
CP000589_288(CP000589|pid:none) Ostreococcus lucimarinus CCE9901...   188   2e-46
(Q5E973) RecName: Full=60S ribosomal protein L18;  &BC104507_1(B...   186   7e-46
(P69090) RecName: Full=60S ribosomal protein L18;  &(P69091) Rec...   185   2e-45
AY130455_1(AY130455|pid:none) Petromyzon marinus ribosomal prote...   185   2e-45
BC053777_1(BC053777|pid:none) Xenopus laevis major, mRNA (cDNA c...   184   3e-45
protein update 2009. 4. 2
PSORT 

 psg: 0.41  gvh: 0.40  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.67  mip: 0.13
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: mitochondrial
	 24.0 %: nuclear
	 12.0 %: cytoplasmic

>> prediction for CHI251 is mit
5' end seq. ID CHI251F
5' end seq. 
>CHI251F.Seq
CAAATACACAATGGCCATCGATAAATCCNAAAGATTCTTAAGAAAGACCGGTAGAAAGAC
TTTANTCTCTCAAAATCCATACCATGCACTCTTAGTCAAATTATACCGTTTCTTAGCCCG
TAGAACCAACTCCAAGTTCAACAAGGTTGTCTTAAAGAGATTATTACAAACTAAAACCAA
TAGACCACCAGTTTCAATCTCAAGAATTGCCAATTTAATGAAGGACAGAAAGAGCGGTAA
GATTGCTGTTTGTGTTGGTACCGTTGTTGATGATGAAAGATTATTANACTGCCCAAAACT
CACTGTTTGTGCATTAAGATTCACTGAAACTGCTCGTTCAAGAATCGTCAAAGCTGGNGG
TAAAGCATTATCTTTCGATCAATTCGCTTTAGTTAGACCAAGAGGTAACAACACTTTCTT
AATCAAAGGTGTTACCAAAGCTAGAGAAGTCTACAAACATTTCGGTAGAGCTCCAGGTTT
ACCAGGTTCCCATGCTCGTCCTTATGTCCGTNNNNNNNNNN
Length of 5' end seq. 521
3' end seq. ID CHI251Z
3' end seq. 
>CHI251Z.Seq
NNNNNNNNNNGTTAGTTTTCTCAAATACACAATGGCCATCGATAAATCCAAAAGATTCTT
AAGAAAGACCGGTAGAAAGACTTTAGTCTCTCAAAATCCATACCATGCACTNTTAGTCAA
ATTATACCGTTTCTTAGCCCGTAGAGCCAACTCCAAGTTCAACAAGGTTGTCTTAAAGAG
ATTATTACNAACTAAAACCAATAGACCACCAGTTTCAATCTCAAGAATTGCCAATTTAAT
GAAGGACAGAAAGAGCGGTAAGATTGCTGTTTGTGTTGGTACCGTTGTTGATGATNAAAG
ATTATTAGACTGCCCAAAACTCACTGTTTGTGCATTAAGATTCACTGAAACTGCTCGTTC
AAGAATCGTCAAAGCTGGTGGTAAAGCATTATCTTTCGATCAATTCGCTTTAGTTAGACC
AAGAGGTANCAACACTTTNTTAATCAA
Length of 3' end seq. 447
Connected seq. ID CHI251P
Connected seq. 
>CHI251P.Seq
CAAATACACAATGGCCATCGATAAATCCNAAAGATTCTTAAGAAAGACCGGTAGAAAGAC
TTTANTCTCTCAAAATCCATACCATGCACTCTTAGTCAAATTATACCGTTTCTTAGCCCG
TAGAACCAACTCCAAGTTCAACAAGGTTGTCTTAAAGAGATTATTACAAACTAAAACCAA
TAGACCACCAGTTTCAATCTCAAGAATTGCCAATTTAATGAAGGACAGAAAGAGCGGTAA
GATTGCTGTTTGTGTTGGTACCGTTGTTGATGATGAAAGATTATTANACTGCCCAAAACT
CACTGTTTGTGCATTAAGATTCACTGAAACTGCTCGTTCAAGAATCGTCAAAGCTGGNGG
TAAAGCATTATCTTTCGATCAATTCGCTTTAGTTAGACCAAGAGGTAACAACACTTTCTT
AATCAAAGGTGTTACCAAAGCTAGAGAAGTCTACAAACATTTCGGTAGAGCTCCAGGTTT
ACCAGGTTCCCATGCTCGTCCTTATGTCCGT----------GTTAGTTTTCTCAAATACA
CAATGGCCATCGATAAATCCAAAAGATTCTTAAGAAAGACCGGTAGAAAGACTTTAGTCT
CTCAAAATCCATACCATGCACTNTTAGTCAAATTATACCGTTTCTTAGCCCGTAGAGCCA
ACTCCAAGTTCAACAAGGTTGTCTTAAAGAGATTATTACNAACTAAAACCAATAGACCAC
CAGTTTCAATCTCAAGAATTGCCAATTTAATGAAGGACAGAAAGAGCGGTAAGATTGCTG
TTTGTGTTGGTACCGTTGTTGATGATNAAAGATTATTAGACTGCCCAAAACTCACTGTTT
GTGCATTAAGATTCACTGAAACTGCTCGTTCAAGAATCGTCAAAGCTGGTGGTAAAGCAT
TATCTTTCGATCAATTCGCTTTAGTTAGACCAAGAGGTANCAACACTTTNTTAATCAA
Length of connected seq. 948
Full length Seq ID -
Full length Seq. -
Length of full length seq. -