CHI239
Library CH
(Link to library)
Clone ID CHI239
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15746-1
Original site URL
Representative seq. ID CHI239P
(Link to Original site)
Representative DNA sequence
>CHI239 (CHI239Q) /CSM/CH/CHI2-B/CHI239Q.Seq.d/
GTTAGGACTTGATAGCAACTATTTCGATAGTACACCATCAATTGTGATTGCACGTCACAT
CCTTTCATTATATGCAGCAAAGATGGTATCACATGCAACTGGTGCCAAATTGGAAGTACA
TCTTCACAGCAAGAACGAGGGTAGTGCCACATTCATCACCCCATCGAACCCAGGTAAAAG
AGATTCACCAGCAATGATGATTGAACACGCAATTGAATCACACTACTTTGGCGAAGGATA
CCACCAAGACCAACAATTATTAAGTCCACAACAAGTTGCCGTTGCTCCATTCCCAGTCTC
ACCAAAGCCTCCAACTGGCACCAACTTACCACCACACGGTTTCCGTTTGGCATGTTATCG
TACCACTGGTACAGTATCGAATTCATCGCCAGTTCATCTCCGTCTTTACTACTTGACAAA
ACCAGTATTCCCACAAGCAACCAATGACCTCTCTGCAAGTAAAAACGATGAAATACTCGC
CACCGAGACTGATCTCTTCAAAATTGGTGATATCTCATTCATTGAGAAATCATCTGAACT
CACCAAAAAGATCTATCAAGAAGTTATGAATGAAGTCGTTGGTAXXXXXXXXXXATCCAT
TATGTAATGCCGATATCTTTGTACCATGCGGTGGTAGACCAGAATCTGTACAATTGACAA
ATGTCGATAAAATGTTCACTGCAACCGGTGAATCTCGTTTCCCAATCATCGTTGAAGGTG
CTAATTTATTCTTTACTCAAAAGGCAAGATTAATGATCGAAGAGAAGGGTGCTATCATCT
TTAAGGATGCCTCTGCCAATAAAGGTGGTGTCACTTCTTCCTCTTTGGAGGTCTTGGCCG
CTTTGGCTTTGAATGATGAAGAATTCGATAGACATATGTGTGTCAAGGATAATGTAGTAC
CAGAGTTTTATGAAAATTACATTAAAGACGTTCATCATACCATTGAATCAAATGCTCGTT
TAGAGTTTGAATGTATTTGGAGTGAACATGAATCAACTAAAACTCCACGTTCAATCCTTT
CCGATCTCTTATCAAATAAAATCAATTCACTCAATGATTCAATTCAAACCTCTTCCCTTT
GGACTGATCAATCACTCAGACGTAAAATCATCTCTGCTGCTTGTCCAAAGGTTTTATTAA
ATCTTTTAGGTGTTGATAAAATTATGGAACGTGTACCAGAACCATACGTTAAAGCTATCT
TTGGTTCTTATTTAGCAAGTCGTTTCGTTTATAAATATGGTCTCAATAGTAATGAATTTG
CTTTCTATACTTATATGGAAACTTTAAAACAACAATAATAATAATAAAAAAAATAATAAT
AAAAAAATAAAATAAAATAAAATAAAATAAAATAAAAAAAAATAAAAGAAAAT
sequence update 2002.10.25
Translated Amino Acid sequence
LGLDSNYFDSTPSIVIARHILSLYAAKMVSHATGAKLEVHLHSKNEGSATFITPSNPGKR
DSPAMMIEHAIESHYFGEGYHQDQQLLSPQQVAVAPFPVSPKPPTGTNLPPHGFRLACYR
TTGTVSNSSPVHLRLYYLTKPVFPQATNDLSASKNDEILATETDLFKIGDISFIEKSSEL
TKKIYQEVMNEVVG---

---PLCNADIFVPCGGRPESVQLTNVDKMFTATGESRFPIIVEGANLFFTQKARLMIEEK
GAIIFKDASANKGGVTSSSLEVLAALALNDEEFDRHMCVKDNVVPEFYENYIKDVHHTIE
SNARLEFECIWSEHESTKTPRSILSDLLSNKINSLNDSIQTSSLWTDQSLRRKIISAACP
KVLLNLLGVDKIMERVPEPYVKAIFGSYLASRFVYKYGLNSNEFAFYTYMETLKQQ****
kk***knkik*nkik*kkiken


Translated Amino Acid sequence (All Frames)
Frame A:
vrt**qlfr*ytincdctshpfiicskdgitcnwcqigstssqqerg*chihhpiepr*k
rftsndd*trn*itllwrripprptiiksttscrcsipsltkasnwhqltttrfpfgmls
yhwysiefiassspsllldktsiptsnq*plck*kr*ntrhrd*slqnw*ylih*eii*t
hqkdlsrsye*srw---

---ihyvmpislyhavvdqnlyn*qmsikcslqpvnlvsqsslkvliysllkrqd**skr
rvlsslrmplpikvvsllplwrswplwl*mmknsidicvsrim*yqsfmkitlktfiipl
nqmlv*slnvfgvnmnqlklhvqsfpisyqiksihsmiqfkplpfglinhsdvksslllv
qrfy*if*vliklwnvyqnhtlklslvli*qvvsfinmvsivmnllsiliwkl*nnnnnn
kknnnkkik*nkik*nkkk*kk

Frame B:
LGLDSNYFDSTPSIVIARHILSLYAAKMVSHATGAKLEVHLHSKNEGSATFITPSNPGKR
DSPAMMIEHAIESHYFGEGYHQDQQLLSPQQVAVAPFPVSPKPPTGTNLPPHGFRLACYR
TTGTVSNSSPVHLRLYYLTKPVFPQATNDLSASKNDEILATETDLFKIGDISFIEKSSEL
TKKIYQEVMNEVVG---

---sim*crylctmrw*trictidkcr*nvhcnr*isfpnhr*rc*filyskgkindrre
gcyhl*gclcq*rwchfflfgglgrfgfe**rir*tyvcqg*cstrvl*klh*rrssyh*
ikcsfrv*myle*t*in*nstfnpfrslik*nqftq*fnsnlfpld*sitqt*nhlccls
kgfiksfrc**nygtctrtir*sylwflfsksfrl*iwsq***icflylygnfkttiiii
kkiiikk*nkik*nkikknkrk

Frame C:
*dliatisivhhql*lhvtsfhymqqrwyhmqlvpnwkyiftartrvvphssphrtqvke
ihqq**lntqlnhttlakdttktnny*vhnklpllhsqshqslqlaptyhhtvsvwhviv
plvqyrihrqfisvftt*qnqyshkqpmtslqvktmkyspprlissklvishslrnhlns
pkrsikkl*mkslv---

---PLCNADIFVPCGGRPESVQLTNVDKMFTATGESRFPIIVEGANLFFTQKARLMIEEK
GAIIFKDASANKGGVTSSSLEVLAALALNDEEFDRHMCVKDNVVPEFYENYIKDVHHTIE
SNARLEFECIWSEHESTKTPRSILSDLLSNKINSLNDSIQTSSLWTDQSLRRKIISAACP
KVLLNLLGVDKIMERVPEPYVKAIFGSYLASRFVYKYGLNSNEFAFYTYMETLKQQ****
kk***knkik*nkik*kkiken

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHI239 (CHI239Q) /CSM/CH/CHI2-B/CHI239Q.Seq.d/ 2504 0.0
SHD412 (SHD412Q) /CSM/SH/SHD4-A/SHD412Q.Seq.d/ 1386 0.0
SHA610 (SHA610Q) /CSM/SH/SHA6-A/SHA610Q.Seq.d/ 1386 0.0
AHF621 (AHF621Q) /CSM/AH/AHF6-A/AHF621Q.Seq.d/ 1386 0.0
AHD336 (AHD336Q) /CSM/AH/AHD3-B/AHD336Q.Seq.d/ 1386 0.0
AHB295 (AHB295Q) /CSM/AH/AHB2-D/AHB295Q.Seq.d/ 1386 0.0
CHL361 (CHL361Q) /CSM/CH/CHL3-C/CHL361Q.Seq.d/ 1378 0.0
AHO238 (AHO238Q) /CSM/AH/AHO2-B/AHO238Q.Seq.d/ 1362 0.0
AFH504 (AFH504Q) /CSM/AF/AFH5-A/AFH504Q.Seq.d/ 1346 0.0
AHF162 (AHF162Q) /CSM/AH/AHF1-C/AHF162Q.Seq.d/ 1328 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL404890|AL404890.1 T3 end of clone AU0AA001B12 of library AU0AA from strain CBS 3082 ofSaccharomyces kluyveri. 50 4e-06 2
AQ946351|AQ946351.1 Sheared DNA-44O5.TF Sheared DNA Trypanosoma brucei genomic clone Sheared DNA-44O5, genomic survey sequence. 58 4e-05 2
AZ124420|AZ124420.1 s073r S. servazzii genomic library Saccharomyces servazzii genomic, genomic survey sequence. 40 1e-04 3
CR382124|CR382124.1 Kluyveromyces lactis strain NRRL Y-1140 chromosome D of strain NRRL Y-1140 of Kluyveromyces lactis. 48 3e-04 2
CQ438609|CQ438609.1 Sequence 4369 from Patent WO0192523. 40 0.003 2
Z74263|Z74263.1 S.cerevisiae chromosome IV reading frame ORF YDL215c. 40 0.010 3
X72015|X72015.1 S.cerevisiae GDH2 gene for NAD-glutamate dehydrogenase. 40 0.014 3
AC094219|AC094219.5 Rattus norvegicus clone CH230-2P12, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 38 0.023 6
AF095907|AF095907.1 Trypanosoma brucei glutamate dehydrogenase (GDH) gene, mitochondrial gene encoding mitochondrial protein, complete cds. 50 0.046 2
CR382135|CR382135.1 Debaryomyces hansenii chromosome C of strain CBS767 of Debaryomyces hansenii. 50 0.100 1
dna update 2004.11.30
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AP007154_641(AP007154|pid:none) Aspergillus oryzae RIB40 genomic... 254 5e-66
AY223544_1(AY223544|pid:none) Emericella nidulans NAD dependent ... 247 6e-64
CU633900_481(CU633900|pid:none) Podospora anserina genomic DNA c... 246 1e-63
AM270040_65(AM270040|pid:none) Aspergillus niger contig An02c046... 244 4e-63
DENCED(A92284;A92215;A32204;A00378)glutamate dehydrogenase (EC 1... 241 4e-62
AJ310444_1(AJ310444|pid:none) Gibberella fujikuroi gdh1 gene for... 230 7e-59
CR940353_806(CR940353|pid:none) Theileria annulata strain Ankara... 216 1e-54
AE017344_16(AE017344|pid:none) Cryptococcus neoformans var. neof... 201 4e-50
FM992689_715(FM992689|pid:none) Candida dubliniensis CD36 chromo... 201 5e-50
CT005254_103(CT005254|pid:none) Leishmania major strain Friedlin... 194 8e-48
protein update 2009. 4. 2
PSORT

psg: 0.75 gvh: 0.50 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.15 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.50 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

84.0 %: cytoplasmic
12.0 %: mitochondrial
4.0 %: nuclear

>> prediction for CHI239 is cyt

5' end seq. ID CHI239F
5' end seq.
>CHI239F.Seq
GTTAGGACTTGATAGCAACTATTTCGATAGTACACCATCAATTGTGATTGCACGTCACAT
CCTTTCATTATATGCAGCAAAGATGGTATCACATGCAACTGGTGCCAAATTGGAAGTACA
TCTTCACAGCAAGAACGAGGGTAGTGCCACATTCATCACCCCATCGAACCCAGGTAAAAG
AGATTCACCAGCAATGATGATTGAACACGCAATTGAATCACACTACTTTGGCGAAGGATA
CCACCAAGACCAACAATTATTAAGTCCACAACAAGTTGCCGTTGCTCCATTCCCAGTCTC
ACCAAAGCCTCCAACTGGCACCAACTTACCACCACACGGTTTCCGTTTGGCATGTTATCG
TACCACTGGTACAGTATCGAATTCATCGCCAGTTCATCTCCGTCTTTACTACTTGACAAA
ACCAGTATTCCCACAAGCAACCAATGACCTCTCTGCAAGTAAAAACGATGAAATACTCGC
CACCGAGACTGATCTCTTCAAAATTGGTGATATCTCATTCATTGAGAAATCATCTGAACT
CACCAAAAAGATCTATCAAGAAGTTATGAATGAAGTCGTTGGTANNNNNNNNNN
Length of 5' end seq. 594
3' end seq. ID CHI239Z
3' end seq.
>CHI239Z.Seq
NNNNNNNNNNATCCATTATGTAATGCCGATATCTTTGTACCATGCGGTGGTAGACCAGAA
TCTGTACAATTGACAAATGTCGATAAAATGTTCACTGCAACCGGTGAATCTCGTTTCCCA
ATCATCGTTGAAGGTGCTAATTTATTCTTTACTCAAAAGGCAAGATTAATGATCGAAGAG
AAGGGTGCTATCATCTTTAAGGATGCCTCTGCCAATAAAGGTGGTGTCACTTCTTCCTCT
TTGGAGGTCTTGGCCGCTTTGGCTTTGAATGATGAAGAATTCGATAGACATATGTGTGTC
AAGGATAATGTAGTACCAGAGTTTTATGAAAATTACATTAAAGACGTTCATCATACCATT
GAATCAAATGCTCGTTTAGAGTTTGAATGTATTTGGAGTGAACATGAATCAACTAAAACT
CCACGTTCAATCCTTTCCGATCTCTTATCAAATAAAATCAATTCACTCAATGATTCAATT
CAAACCTCTTCCCTTTGGACTGATCAATCACTCAGACGTAAAATCATCTCTGCTGCTTGT
CCAAAGGTTTTATTAAATCTTTTAGGTGTTGATAAAATTATGGAACGTGTACCAGAACCA
TACGTTAAAGCTATCTTTGGTTCTTATTTAGCAAGTCGTTTCGTTTATAAATATGGTCTC
AATAGTAATGAATTTGCTTTCTATACTTATATGGAAACTTTAAAACAACAATAATAATAA
TAAAAAAAATAATAATAAAAAAATAAAATAAAATAAAATAAAATAAAATAAAAAAAAATA
AAAGAAAAT
Length of 3' end seq. 789
Connected seq. ID CHI239P
Connected seq.
>CHI239P.Seq
GTTAGGACTTGATAGCAACTATTTCGATAGTACACCATCAATTGTGATTGCACGTCACAT
CCTTTCATTATATGCAGCAAAGATGGTATCACATGCAACTGGTGCCAAATTGGAAGTACA
TCTTCACAGCAAGAACGAGGGTAGTGCCACATTCATCACCCCATCGAACCCAGGTAAAAG
AGATTCACCAGCAATGATGATTGAACACGCAATTGAATCACACTACTTTGGCGAAGGATA
CCACCAAGACCAACAATTATTAAGTCCACAACAAGTTGCCGTTGCTCCATTCCCAGTCTC
ACCAAAGCCTCCAACTGGCACCAACTTACCACCACACGGTTTCCGTTTGGCATGTTATCG
TACCACTGGTACAGTATCGAATTCATCGCCAGTTCATCTCCGTCTTTACTACTTGACAAA
ACCAGTATTCCCACAAGCAACCAATGACCTCTCTGCAAGTAAAAACGATGAAATACTCGC
CACCGAGACTGATCTCTTCAAAATTGGTGATATCTCATTCATTGAGAAATCATCTGAACT
CACCAAAAAGATCTATCAAGAAGTTATGAATGAAGTCGTTGGTA----------ATCCAT
TATGTAATGCCGATATCTTTGTACCATGCGGTGGTAGACCAGAATCTGTACAATTGACAA
ATGTCGATAAAATGTTCACTGCAACCGGTGAATCTCGTTTCCCAATCATCGTTGAAGGTG
CTAATTTATTCTTTACTCAAAAGGCAAGATTAATGATCGAAGAGAAGGGTGCTATCATCT
TTAAGGATGCCTCTGCCAATAAAGGTGGTGTCACTTCTTCCTCTTTGGAGGTCTTGGCCG
CTTTGGCTTTGAATGATGAAGAATTCGATAGACATATGTGTGTCAAGGATAATGTAGTAC
CAGAGTTTTATGAAAATTACATTAAAGACGTTCATCATACCATTGAATCAAATGCTCGTT
TAGAGTTTGAATGTATTTGGAGTGAACATGAATCAACTAAAACTCCACGTTCAATCCTTT
CCGATCTCTTATCAAATAAAATCAATTCACTCAATGATTCAATTCAAACCTCTTCCCTTT
GGACTGATCAATCACTCAGACGTAAAATCATCTCTGCTGCTTGTCCAAAGGTTTTATTAA
ATCTTTTAGGTGTTGATAAAATTATGGAACGTGTACCAGAACCATACGTTAAAGCTATCT
TTGGTTCTTATTTAGCAAGTCGTTTCGTTTATAAATATGGTCTCAATAGTAATGAATTTG
CTTTCTATACTTATATGGAAACTTTAAAACAACAATAATAATAATAAAAAAAATAATAAT
AAAAAAATAAAATAAAATAAAATAAAATAAAATAAAAAAAAATAAAAGAAAAT
Length of connected seq. 1363
Full length Seq ID -
Full length Seq. -
Length of full length seq. -