CHI233
Library CH
(Link to library)
Clone ID CHI233
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U12838-1|Contig-U16393-1
Original site URL
Representative seq. ID CHI233P
(Link to Original site)
Representative DNA sequence
>CHI233 (CHI233Q) /CSM/CH/CHI2-B/CHI233Q.Seq.d/
AAAAAAAAATTTATAAATAAACCAAAAAACAGGATATTTGTTATTTTATAATGAGTAAAA
GAAAGCACGAATCATCAGATTCAAATAAAAAAGCAATGAAAAAACAACAAAATAAAATAG
AAGAAGAAGAAGAAGAAATTACAAATACTACAACTACAACTACAACCACAAATAATAATT
ATAATAATATAAAATCAAATTTAACAATTGATCAATGGATACCAAAAAAAGAAACATTTT
CAAAACGTTATTATGAAATTTTAGAAAAGAGAAAAGAGTTACCAGTTTGGAAACAAAAAG
AGGATTTTATAAAAGTTATTAAAGAGAATCAAGTTGTAATTTTAGTTGGTGAAACAGGTT
CAGGTAAAACCACACAAATTCCACAATTTGTAGTTGATGCAGGATTAATTAGACCAGGTA
AAATGGTAGGTGTTACACAACCAAGAAGAGTAGCAGCAATAAGTGTAGCAAAAAGAGTAT
CAGAGGAAATGGATTTTGAATTGGGTGAAGAGGTTGGTTATTCAATTCGTTTCGAAGAGT
TATCATCAGCACGTACATTTATGAAATATTTAACTGATGGTATGTXXXXXXXXXXAATTA
TCCAAAATGTTGATAGTTTCAGCTGAACGTAGTTGTTCCAATGAAATCTTAACAATTGCT
GCAATGTTATCCGCTCCAAATTGTTTTATGCGTCCAAAGGATAACAGAATCGAAGCTGAC
TCTGCAAAGAAATCATTTGATCATTTCGATGGTGATCATCTTACAATGTTAAATGTTTAT
CATAGTTTTAAAAAGAATGGTGAAGATCCAACTTGGTGTTACGATAATTTCCTCAATCAT
CGTGCCATTAAACAAGCCGATAGTGTCCGTTCACAATTGGCTAGAATCTTAACTCGTTTC
AAATTACCATTGGTTAGTGGTGATGTAAATAGTAAATTTTATTATGAAAATATAAAGAAA
TGTATCGCTGCTGGCTTCTTTATGCAAGTGGCTAAATGCGAGAAAAAAAATATCTACTTC
ACCCTAGGTGATGAACAATCTGTAATCTTTCATCCTTCAACTGGTTTAACTCGTCGTCCT
GAATTTTGTATCTACAATGAATTTGTTTTAACCTCTGAAAATTATATTAGAACAATCACT
GATGTTAAATTTGATTGGTTATTAGAATTGGCTCCAAGTTATTTTAAACAAAAATCTTTC
CCTAAAAAAACAAAAGAAACAATTCAAAGAGCTCAAAGATTATATAGTGGTAGTAGTAGT
GGTAGTAGTAGTGGTAGTAATAAAAAATAAATAAATTAATAAATTTTAAAAATAAAATAA
AATATTTTAATTTAATATATTAAATGTTTAAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence
kkiyk*TKKQDICYFIMSKRKHESSDSNKKAMKKQQNKIEEEEEEITNTTTTTTTTNNNY
NNIKSNLTIDQWIPKKETFSKRYYEILEKRKELPVWKQKEDFIKVIKENQVVILVGETGS
GKTTQIPQFVVDAGLIRPGKMVGVTQPRRVAAISVAKRVSEEMDFELGEEVGYSIRFEEL
SSARTFMKYLTDGM---

---LSKMLIVSAERSCSNEILTIAAMLSAPNCFMRPKDNRIEADSAKKSFDHFDGDHLTM
LNVYHSFKKNGEDPTWCYDNFLNHRAIKQADSVRSQLARILTRFKLPLVSGDVNSKFYYE
NIKKCIAAGFFMQVAKCEKKNIYFTLGDEQSVIFHPSTGLTRRPEFCIYNEFVLTSENYI
RTITDVKFDWLLELAPSYFKQKSFPKKTKETIQRAQRLYSGSSSGSSSGSNKK*in**il
kik*nili*yikclkk


Translated Amino Acid sequence (All Frames)
Frame A:
kkkfinkpknrifvil**vkestnhqiqikkq*knnkik*kkkkkklqilqlqlqpqiii
iii*nqi*qlingyqkkkhfqnvimkf*kreksyqfgnkkril*kllkrikl*f*lvkqv
qvkphkfhnl*lmqd*ldqvkw*vlhnqee*qq*v*qkeyqrkwilnwvkrlviqfvsks
yhqhvhl*ni*lmvc---

---nypkc**fqlnvvvpmks*qllqcyplqivlcvqriteskltlqrnhliismviilq
c*mfiivlkrmvkiqlgvtiissiivplnkpivsvhnwles*lvsnyhwlvvm*ivnfim
ki*rnvsllaslckwlnarkkistsp*vmnnl*sfilqlv*lvvlnfvstmnlf*plkii
leqslmlnligy*nwlqvilnknlslkkqkkqfkelkdyivvvvvvvvvvviknk*inkf
*k*nkif*fnilnv*k

Frame B:
kknl*inqktgyllfyne*kkariirfk*ksnekttk*nrrrrrrnykyynynynhk**l
**ykikfnn*smdtkkrnifktll*nfrkekrvtsletkrgfyksy*resscnfsw*nrf
r*nhtnstics*crin*tr*ngrcyttkksssnkcskksirgngf*ig*rgwlfnsfrrv
iistyiyeifn*wy---

---iiqnvdsfs*t*lfq*nlnnccnvirsklfyaskg*qnrs*lckeii*sfrw*ssyn
vkcls*f*kew*rsnlvlr*fpqssch*tsr*cpftig*nlnsfqitig*w*ck**ill*
kykemyrcwllyasg*mrekkyllhpr**ticnlssfnwfnsss*ilylq*icfnl*kly
*nnh*c*i*lvirigsklf*tkifp*knkrnnsksskii*w***w***w***kinklinf
knkikyfnliy*mfkk

Frame C:
kkiyk*TKKQDICYFIMSKRKHESSDSNKKAMKKQQNKIEEEEEEITNTTTTTTTTNNNY
NNIKSNLTIDQWIPKKETFSKRYYEILEKRKELPVWKQKEDFIKVIKENQVVILVGETGS
GKTTQIPQFVVDAGLIRPGKMVGVTQPRRVAAISVAKRVSEEMDFELGEEVGYSIRFEEL
SSARTFMKYLTDGM---

---LSKMLIVSAERSCSNEILTIAAMLSAPNCFMRPKDNRIEADSAKKSFDHFDGDHLTM
LNVYHSFKKNGEDPTWCYDNFLNHRAIKQADSVRSQLARILTRFKLPLVSGDVNSKFYYE
NIKKCIAAGFFMQVAKCEKKNIYFTLGDEQSVIFHPSTGLTRRPEFCIYNEFVLTSENYI
RTITDVKFDWLLELAPSYFKQKSFPKKTKETIQRAQRLYSGSSSGSSSGSNKK*in**il
kik*nili*yikclkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHI233 (CHI233Q) /CSM/CH/CHI2-B/CHI233Q.Seq.d/ 2004 0.0
CHR355 (CHR355Q) /CSM/CH/CHR3-C/CHR355Q.Seq.d/ 1197 0.0
CHI803 (CHI803Q) /CSM/CH/CHI8-A/CHI803Q.Seq.d/ 1197 0.0
CHI582 (CHI582Q) /CSM/CH/CHI5-D/CHI582Q.Seq.d/ 1197 0.0
AHR238 (AHR238Q) /CSM/AH/AHR2-B/AHR238Q.Seq.d/ 1197 0.0
CHI155 (CHI155Q) /CSM/CH/CHI1-C/CHI155Q.Seq.d/ 1183 0.0
VHD813 (VHD813Q) /CSM/VH/VHD8-A/VHD813Q.Seq.d/ 1178 0.0
CHS333 (CHS333Q) /CSM/CH/CHS3-B/CHS333Q.Seq.d/ 1158 0.0
CHF648 (CHF648Q) /CSM/CH/CHF6-B/CHF648Q.Seq.d/ 1134 0.0
CHF541 (CHF541Q) /CSM/CH/CHF5-B/CHF541Q.Seq.d/ 1116 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 70 6e-14 19
AX489029|AX489029.1 Sequence 6329 from Patent WO02053728. 48 1e-11 5
AR550270|AR550270.1 Sequence 5401 from patent US 6747137. 48 1e-10 3
Z72642|Z72642.1 S.cerevisiae chromosome VII reading frame ORF YGL120c. 66 1e-10 4
U41851|U41851.1 Saccharomyces cerevisiae splicing factor Prp43p (PRP43) gene, complete cds. 66 2e-10 4
AX830412|AX830412.1 Sequence 1132 from Patent WO03072602. 66 2e-09 3
AX819382|AX819382.1 Sequence 1132 from Patent EP1338608. 66 2e-09 3
AX595292|AX595292.1 Sequence 946 from Patent EP1258494. 66 2e-09 3
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence. 48 3e-09 15
AL035476|AL035476.7 Plasmodium falciparum MAL4P3. 40 4e-09 17
dna update 2004.11.30
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54NJ4) RecName: Full=Putative pre-mRNA-splicing factor ATP-dep... 445 e-123
BT034008_1(BT034008|pid:none) Zea mays full-length cDNA clone ZM... 258 4e-67
EU961300_1(EU961300|pid:none) Zea mays clone 234415 pre-mRNA-spl... 255 2e-66
AC153352_12(AC153352|pid:none) Medicago truncatula clone mth2-10... 254 4e-66
(Q20875) RecName: Full=Putative pre-mRNA-splicing factor ATP-dep... 254 5e-66
CR954201_307(CR954201|pid:none) Ostreococcus tauri strain OTTH05... 251 4e-65
AL162507_1(AL162507|pid:none) Arabidopsis thaliana DNA chromosom... 250 9e-65
(O22899) RecName: Full=Probable pre-mRNA-splicing factor ATP-dep... 249 2e-64
AB001636_1(AB001636|pid:none) Homo sapiens mRNA for ATP-dependen... 241 5e-62
AK303506_1(AK303506|pid:none) Homo sapiens cDNA FLJ55635 complet... 241 5e-62
protein update 2009. 4. 2
PSORT

psg: 0.82 gvh: 0.26 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.14 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
36.0 %: nuclear
16.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: plasma membrane

>> prediction for CHI233 is cyt

5' end seq. ID CHI233F
5' end seq.
>CHI233F.Seq
AAAAAAAAATTTATAAATAAACCAAAAAACAGGATATTTGTTATTTTATAATGAGTAAAA
GAAAGCACGAATCATCAGATTCAAATAAAAAAGCAATGAAAAAACAACAAAATAAAATAG
AAGAAGAAGAAGAAGAAATTACAAATACTACAACTACAACTACAACCACAAATAATAATT
ATAATAATATAAAATCAAATTTAACAATTGATCAATGGATACCAAAAAAAGAAACATTTT
CAAAACGTTATTATGAAATTTTAGAAAAGAGAAAAGAGTTACCAGTTTGGAAACAAAAAG
AGGATTTTATAAAAGTTATTAAAGAGAATCAAGTTGTAATTTTAGTTGGTGAAACAGGTT
CAGGTAAAACCACACAAATTCCACAATTTGTAGTTGATGCAGGATTAATTAGACCAGGTA
AAATGGTAGGTGTTACACAACCAAGAAGAGTAGCAGCAATAAGTGTAGCAAAAAGAGTAT
CAGAGGAAATGGATTTTGAATTGGGTGAAGAGGTTGGTTATTCAATTCGTTTCGAAGAGT
TATCATCAGCACGTACATTTATGAAATATTTAACTGATGGTATGTNNNNNNNNNN
Length of 5' end seq. 595
3' end seq. ID CHI233Z
3' end seq.
>CHI233Z.Seq
NNNNNNNNNNAATTATCCAAAATGTTGATAGTTTCAGCTGAACGTAGTTGTTCCAATGAA
ATCTTAACAATTGCTGCAATGTTATCCGCTCCAAATTGTTTTATGCGTCCAAAGGATAAC
AGAATCGAAGCTGACTCTGCAAAGAAATCATTTGATCATTTCGATGGTGATCATCTTACA
ATGTTAAATGTTTATCATAGTTTTAAAAAGAATGGTGAAGATCCAACTTGGTGTTACGAT
AATTTCCTCAATCATCGTGCCATTAAACAAGCCGATAGTGTCCGTTCACAATTGGCTAGA
ATCTTAACTCGTTTCAAATTACCATTGGTTAGTGGTGATGTAAATAGTAAATTTTATTAT
GAAAATATAAAGAAATGTATCGCTGCTGGCTTCTTTATGCAAGTGGCTAAATGCGAGAAA
AAAAATATCTACTTCACCCTAGGTGATGAACAATCTGTAATCTTTCATCCTTCAACTGGT
TTAACTCGTCGTCCTGAATTTTGTATCTACAATGAATTTGTTTTAACCTCTGAAAATTAT
ATTAGAACAATCACTGATGTTAAATTTGATTGGTTATTAGAATTGGCTCCAAGTTATTTT
AAACAAAAATCTTTCCCTAAAAAAACAAAAGAAACAATTCAAAGAGCTCAAAGATTATAT
AGTGGTAGTAGTAGTGGTAGTAGTAGTGGTAGTAATAAAAAATAAATAAATTAATAAATT
TTAAAAATAAAATAAAATATTTTAATTTAATATATTAAATGTTTAAAAAAA
Length of 3' end seq. 771
Connected seq. ID CHI233P
Connected seq.
>CHI233P.Seq
AAAAAAAAATTTATAAATAAACCAAAAAACAGGATATTTGTTATTTTATAATGAGTAAAA
GAAAGCACGAATCATCAGATTCAAATAAAAAAGCAATGAAAAAACAACAAAATAAAATAG
AAGAAGAAGAAGAAGAAATTACAAATACTACAACTACAACTACAACCACAAATAATAATT
ATAATAATATAAAATCAAATTTAACAATTGATCAATGGATACCAAAAAAAGAAACATTTT
CAAAACGTTATTATGAAATTTTAGAAAAGAGAAAAGAGTTACCAGTTTGGAAACAAAAAG
AGGATTTTATAAAAGTTATTAAAGAGAATCAAGTTGTAATTTTAGTTGGTGAAACAGGTT
CAGGTAAAACCACACAAATTCCACAATTTGTAGTTGATGCAGGATTAATTAGACCAGGTA
AAATGGTAGGTGTTACACAACCAAGAAGAGTAGCAGCAATAAGTGTAGCAAAAAGAGTAT
CAGAGGAAATGGATTTTGAATTGGGTGAAGAGGTTGGTTATTCAATTCGTTTCGAAGAGT
TATCATCAGCACGTACATTTATGAAATATTTAACTGATGGTATGT----------AATTA
TCCAAAATGTTGATAGTTTCAGCTGAACGTAGTTGTTCCAATGAAATCTTAACAATTGCT
GCAATGTTATCCGCTCCAAATTGTTTTATGCGTCCAAAGGATAACAGAATCGAAGCTGAC
TCTGCAAAGAAATCATTTGATCATTTCGATGGTGATCATCTTACAATGTTAAATGTTTAT
CATAGTTTTAAAAAGAATGGTGAAGATCCAACTTGGTGTTACGATAATTTCCTCAATCAT
CGTGCCATTAAACAAGCCGATAGTGTCCGTTCACAATTGGCTAGAATCTTAACTCGTTTC
AAATTACCATTGGTTAGTGGTGATGTAAATAGTAAATTTTATTATGAAAATATAAAGAAA
TGTATCGCTGCTGGCTTCTTTATGCAAGTGGCTAAATGCGAGAAAAAAAATATCTACTTC
ACCCTAGGTGATGAACAATCTGTAATCTTTCATCCTTCAACTGGTTTAACTCGTCGTCCT
GAATTTTGTATCTACAATGAATTTGTTTTAACCTCTGAAAATTATATTAGAACAATCACT
GATGTTAAATTTGATTGGTTATTAGAATTGGCTCCAAGTTATTTTAAACAAAAATCTTTC
CCTAAAAAAACAAAAGAAACAATTCAAAGAGCTCAAAGATTATATAGTGGTAGTAGTAGT
GGTAGTAGTAGTGGTAGTAATAAAAAATAAATAAATTAATAAATTTTAAAAATAAAATAA
AATATTTTAATTTAATATATTAAATGTTTAAAAAAA
Length of connected seq. 1346
Full length Seq ID -
Full length Seq. -
Length of full length seq. -