CHI228
Library CH
(Link to library)
Clone ID CHI228
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16517-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHI228 (CHI228Q) /CSM/CH/CHI2-B/CHI228Q.Seq.d/
XXXXXXXXXXTATTGAAAATTATCCAAATTTCCAAAAATTCTCAACTACTGTATCAAAAC
ATGTTTCGTTAATGGATGAATTAAATAGATTAATTTCATTAGATAATTTAATGGAGGTAT
CAGAGGTACAACAAGAATTAGCATGTAATCATGATCATAACAGTATTTATAATCATGTTT
TAGAAATTGTAAATGATTCAAAATATACTGATAGAGATAAATTAGTATTAGTACTTTTAT
ATAGTATTAGATATGAAGATGGTAGAGTTTGGGAATTAAAAGAAAAATTATCAAGTATTG
GTATTCCTCCAAAAGAAATTGGTTTAATTGATACATTAAGAGGATATGCAGGTGCAAGTT
TAAGAGAAGGTGATTTATTAGGAACTAAAAATATTTTTTCATTTGCAAGAAGTGTTGTTA
AACGTGGTTTACAAGGTGTTTCAAATATTTATACTCAACATAAACCATTATTACATGATA
TTTTAGATAGTATTTTAAAGAACAAATTAAAAGAAACCTCTTATCCATACTTATCAACAA
CTCAATCAAGAGAGAGACCACAAGATGTAATTATATTTATGGTTGGTGGTATCACTTATG
AAGAGGCATTAACCGTTTACACTTTTAATTCTTTAAATACTGGTGTTTGTCGTGTTGTAT
TAGGTGGTACTTCAATTTTAAATCGTGAACAATTTTTAGAAGATTTATCAAGTACTCAAA
TTTCTAATCCTTCTAGTAGTAGAGNAATAAGT
sequence update 2002. 9.10
Translated Amino Acid sequence
---IENYPNFQKFSTTVSKHVSLMDELNRLISLDNLMEVSEVQQELACNHDHNSIYNHVL
EIVNDSKYTDRDKLVLVLLYSIRYEDGRVWELKEKLSSIGIPPKEIGLIDTLRGYAGASL
REGDLLGTKNIFSFARSVVKRGLQGVSNIYTQHKPLLHDILDSILKNKLKETSYPYLSTT
QSRERPQDVIIFMVGGITYEEALTVYTFNSLNTGVCRVVLGGTSILNREQFLEDLSSTQI
SNPSSSRXIS


Translated Amino Acid sequence (All Frames)
Frame A:
---IENYPNFQKFSTTVSKHVSLMDELNRLISLDNLMEVSEVQQELACNHDHNSIYNHVL
EIVNDSKYTDRDKLVLVLLYSIRYEDGRVWELKEKLSSIGIPPKEIGLIDTLRGYAGASL
REGDLLGTKNIFSFARSVVKRGLQGVSNIYTQHKPLLHDILDSILKNKLKETSYPYLSTT
QSRERPQDVIIFMVGGITYEEALTVYTFNSLNTGVCRVVLGGTSILNREQFLEDLSSTQI
SNPSSSRXIS


Frame B:
---lkiiqisknsqllyqnmfr*wmn*id*fh*ii*wryqrynkn*hvimiitvfiimf*
kl*miqniliein*y*yfyivldmkmvefgn*kknyqvlvflqkklv*lih*edmqvqv*
ekviy*elkiffhlqevllnvvykvfqifilninhyymif*ivf*rtn*kkplihtyqql
nqerdhkm*lylwlvvslmkrh*pftllil*ilvfvvly*vvlqf*ivnnf*kiyqvlkf
lillvvex*


Frame C:
---*klskfpkilnyciktcfvng*ik*infir*fnggirgttrism*s*s*qyl*scfr
nck*fkiy**r*isistfi*y*i*rw*slgikrkiikywysskrnwfn*yikricrckfk
rr*firn*kyffickkcc*twftrcfkylyst*tiit*yfr*yfkeqikrnllsilinns
ikrettrcnyiygwwyhl*rginrlhf*ffkywclsccirwyfnfks*tifrrfikysnf
*sf***xnk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHI228 (CHI228Q) /CSM/CH/CHI2-B/CHI228Q.Seq.d/ 1465 0.0
SFI855 (SFI855Q) /CSM/SF/SFI8-C/SFI855Q.Seq.d/ 1445 0.0
AFO808 (AFO808Q) /CSM/AF/AFO8-A/AFO808Q.Seq.d/ 1445 0.0
SFI755 (SFI755Q) /CSM/SF/SFI7-C/SFI755Q.Seq.d/ 1400 0.0
SFB696 (SFB696Q) /CSM/SF/SFB6-D/SFB696Q.Seq.d/ 1398 0.0
SFC628 (SFC628Q) /CSM/SF/SFC6-B/SFC628Q.Seq.d/ 1396 0.0
VHA223 (VHA223Q) /CSM/VH/VHA2-A/VHA223Q.Seq.d/ 1384 0.0
CFJ234 (CFJ234Q) /CSM/CF/CFJ2-B/CFJ234Q.Seq.d/ 1380 0.0
CFJ726 (CFJ726Q) /CSM/CF/CFJ7-B/CFJ726Q.Seq.d/ 1378 0.0
AFJ824 (AFJ824Q) /CSM/AF/AFJ8-A/AFJ824Q.Seq.d/ 1376 0.0

own update 2002. 9.29
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AP006628|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome. 36 1e-10 25
BA000016|BA000016.3 Clostridium perfringens str. 13 DNA, complete genome. 36 2e-10 29
AE017263|AE017263.1 Mesoplasma florum L1 complete genome. 34 1e-09 24
BX842642|BX842642.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 1/4. 36 9e-08 16
BX957223|BX957223.1 Methanococcus maripaludis S2 complete genome; segment 5/5. 36 1e-06 17
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 40 3e-06 12
BA000021|BA000021.3 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome. 36 3e-06 20
AE015939|AE015939.1 Clostridium tetani E88, section 4 of 10 of the complete genome. 34 6e-06 18
AR271569|AR271569.1 Sequence 1 from patent US 6503729. 34 1e-05 27
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 2/4. 42 2e-05 20
dna update 2004.11.30
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54GE3) RecName: Full=Vacuolar protein sorting-associated prote... 479 e-134
AK223214_1(AK223214|pid:none) Homo sapiens mRNA for vacuolar pro... 213 4e-54
AJ133421_1(AJ133421|pid:none) Homo sapiens mRNA for leucocyte va... 213 4e-54
(Q9NRW7) RecName: Full=Vacuolar protein sorting-associated prote... 213 4e-54
BC123422_1(BC123422|pid:none) Bos taurus vacuolar protein sortin... 212 9e-54
AK146190_1(AK146190|pid:none) Mus musculus CRL-1722 L5178Y-R cDN... 212 9e-54
AK295529_1(AK295529|pid:none) Homo sapiens cDNA FLJ54353 complet... 211 1e-53
AJ720470_1(AJ720470|pid:none) Gallus gallus mRNA for hypothetica... 205 1e-51
BC084162_1(BC084162|pid:none) Xenopus laevis hypothetical LOC495... 205 1e-51
BT045798_1(BT045798|pid:none) Salmo salar clone ssal-rgf-531-252... 204 2e-51
protein update 2009. 5.19
PSORT

psg: 0.73 gvh: 0.43 alm: 0.36 top: 0.53 tms: 0.00 mit: 0.25 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: cytoplasmic
24.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for CHI228 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHI228Z
3' end seq.
>CHI228Z.Seq
NNNNNNNNNNTATTGAAAATTATCCAAATTTCCAAAAATTCTCAACTACTGTATCAAAAC
ATGTTTCGTTAATGGATGAATTAAATAGATTAATTTCATTAGATAATTTAATGGAGGTAT
CAGAGGTACAACAAGAATTAGCATGTAATCATGATCATAACAGTATTTATAATCATGTTT
TAGAAATTGTAAATGATTCAAAATATACTGATAGAGATAAATTAGTATTAGTACTTTTAT
ATAGTATTAGATATGAAGATGGTAGAGTTTGGGAATTAAAAGAAAAATTATCAAGTATTG
GTATTCCTCCAAAAGAAATTGGTTTAATTGATACATTAAGAGGATATGCAGGTGCAAGTT
TAAGAGAAGGTGATTTATTAGGAACTAAAAATATTTTTTCATTTGCAAGAAGTGTTGTTA
AACGTGGTTTACAAGGTGTTTCAAATATTTATACTCAACATAAACCATTATTACATGATA
TTTTAGATAGTATTTTAAAGAACAAATTAAAAGAAACCTCTTATCCATACTTATCAACAA
CTCAATCAAGAGAGAGACCACAAGATGTAATTATATTTATGGTTGGTGGTATCACTTATG
AAGAGGCATTAACCGTTTACACTTTTAATTCTTTAAATACTGGTGTTTGTCGTGTTGTAT
TAGGTGGTACTTCAATTTTAAATCGTGAACAATTTTTAGAAGATTTATCAAGTACTCAAA
TTTCTAATCCTTCTAGTAGTAGAGNAATAAGT
Length of 3' end seq. 752
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -