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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHI193
Library CH
(Link to library)
Clone ID CHI193
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15345-1|Contig-U15591-1
Original site URL
Representative seq. ID CHI193P
(Link to Original site)
Representative DNA sequence 
>CHI193 (CHI193Q) /CSM/CH/CHI1-D/CHI193Q.Seq.d/
ATAATTTTCATTCACAATATAACAATAATAATAATTATTTAAAATGGGTAATTTATTATC
TCATACTTATGGAGTCCCTTCAATAATTTCAATAATAATTATAGTATCCTCATCAATTTT
TTTAATAATTTTAAAAAAAGATAAACAAAAATATATAAATAATCAAATTAATAATCAAAT
TAATAATCAAATTGTTCCTGAAATATCCAATAATAATAGTTATAATAATAGNGATAATAA
TAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA
TAATAATAATAATAATAATAATAANTNACGATGATTCNGCTGTTNATNTXXXXXXXXXXT
ACCATATTATAATTCTCAAACTCAAGTTGTGGAAATTGAAAATAAATCATCGAGTACAAG
ATCAAACACATTTGTATATAAGAGACAGACTGGTATACCATTAAAGGATCAAAAAACATT
GGAAGATTTAGAAGAAATGTTCAATCAAGTTAAAGCACATACTATTGATATTAACCAAGT
TCCAATGTATTCGATTGTACCTGCTATTAAAAATAATGAATATGAGCAATGGAAATATGC
ATTAAATAACAAGGATATCATTTTCATTGATAATCTATTGATTGTAACTGGAAGTTTCAA
TCCAACCTATGACAGTCTTGAATGTGAGAATCGTACATTAATATTCACATTTGATTTACC
AGATATTCCAGAATCTCATTTCTCTCATTCAATCTACTATGATCCAAGTGACAAAGTTAG
ATACTTAAAAGTCTCGGGTAATAGAAAATTAAGTTATAGAGCATTAACTGGTACACGTGG
TGGTGAGAGTACAATTAATGAATATCCATCAGCTGGTGTTAAAATTGGTAATAGTTTAAA
TCTTAGAAAAGATGGAGAATTTGA
sequence update 2002.10.25
Translated Amino Acid sequence 
nfhsqynnnnnylkwviyylilmeslq*fq**l*yphqff**f*kkinkni*IIKLIIKL
IIKLFLKYPIIIVIIIXIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIXXDDSAVX---

---PYYNSQTQVVEIENKSSSTRSNTFVYKRQTGIPLKDQKTLEDLEEMFNQVKAHTIDI
NQVPMYSIVPAIKNNEYEQWKYALNNKDIIFIDNLLIVTGSFNPTYDSLECENRTLIFTF
DLPDIPESHFSHSIYYDPSDKVRYLKVSGNRKLSYRALTGTRGGESTINEYPSAGVKIGN
SLNLRKDGEF
Translated Amino Acid sequence (All Frames) 
Frame A:
iifihnitiiiii*ng*fiisylwspfnnfnnnysilinffnnfkkr*tkiyk*sn**sn
**sncs*niq***l***x******************************xtmixlxx---

---yhiiilklklwklkinhrvqdqthlyirdrlvyh*rikkhwki*kkcsiklkhilli
ltkfqcirlylllkimnmsngnmh*itrisfsliiy*l*levsiqpmtvlnvrivh*ysh
liyqifqnlisliqstmiqvtkldt*ksrvien*vieh*lvhvvvrvqlmnihqlvlklv
iv*ilekmenl

Frame B:
*fsfti*q***lfkmgnllshtygvpsiisiiiivsssifliilkkdkqkyinnqinnqi
nnqivpeisnnnsynnxdnnnnnnnnnnnnnnnnnnnnnnnnnnnnnxxr*fxcxx---

---til*fsnsscgn*k*iieykikhici*etdwytikgsknigrfrrnvqss*styy*y
*pssnvfdctcy*k**i*ameicik*qgyhfh**sidcnwkfqsnl*qs*m*esyinihi
*ftrysrisflsfnll*sk*qs*ilkslg**kikl*sinwytww*eyn**isiswc*nw*
*fks*krwri*

Frame C:
nfhsqynnnnnylkwviyylilmeslq*fq**l*yphqff**f*kkinkni*IIKLIIKL
IIKLFLKYPIIIVIIIXIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIXXDDSAVX---

---PYYNSQTQVVEIENKSSSTRSNTFVYKRQTGIPLKDQKTLEDLEEMFNQVKAHTIDI
NQVPMYSIVPAIKNNEYEQWKYALNNKDIIFIDNLLIVTGSFNPTYDSLECENRTLIFTF
DLPDIPESHFSHSIYYDPSDKVRYLKVSGNRKLSYRALTGTRGGESTINEYPSAGVKIGN
SLNLRKDGEF
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHI193 (CHI193Q) /CSM/CH/CHI1-D/CHI193Q.Seq.d/                       1120   0.0
AHL245 (AHL245Q) /CSM/AH/AHL2-B/AHL245Q.Seq.d/                       1120   0.0
AHI704 (AHI704Q) /CSM/AH/AHI7-A/AHI704Q.Seq.d/                       1120   0.0
AHE564 (AHE564Q) /CSM/AH/AHE5-C/AHE564Q.Seq.d/                       1112   0.0
AFI865 (AFI865Q) /CSM/AF/AFI8-C/AFI865Q.Seq.d/                       1112   0.0
AHD861 (AHD861Q) /CSM/AH/AHD8-C/AHD861Q.Seq.d/                       1104   0.0
AHL469 (AHL469Q) /CSM/AH/AHL4-C/AHL469Q.Seq.d/                       1102   0.0
CHH490 (CHH490Q) /CSM/CH/CHH4-D/CHH490Q.Seq.d/                       1051   0.0
CHI178 (CHI178Q) /CSM/CH/CHI1-D/CHI178Q.Seq.d/                       1037   0.0
AFK186 (AFK186Q) /CSM/AF/AFK1-D/AFK186Q.Seq.d/                       1037   0.0
own update 2002. 9.29
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U82514|U82514.1 Dictyostelium discoideum random slug cDNA6 protein (rsc6) mRNA, partial cds.   737   0.0    1
AE014834|AE014834.1 Plasmodium falciparum 3D7 chromosome 10 section 6 of 7 of the complete sequence.    40   5e-07  11
AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    42   1e-06  8
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    42   2e-06  10
AE014825|AE014825.1 Plasmodium falciparum 3D7 chromosome 14 section 10 of 13 of the complete sequence.    38   4e-05  11
L36897|L36897.1 Saccharomyces cerevisiae mitochondrion oxi3 gene, aapI gene, oli2 gene, ORF4, replication of origin (ori7 and ori2), and ORF5.    36   5e-05  6
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.    36   7e-05  9
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           42   1e-04  16
CR382399|CR382399.1 Plasmodium falciparum chromosome 6, complete sequence; segment 2/5.    34   3e-04  17
AL929356|AL929356.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 2/5.    40   4e-04  13
dna update 2004.11.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U82514_1(U82514|pid:none) Dictyostelium discoideum random slug c...   254   3e-66
AY166677_1(AY166677|pid:none) Plasmodium reichenowi reticulocyte...    40   0.11
CP000749_2548(CP000749|pid:none) Marinomonas sp. MWYL1, complete...    35   2.6
AP004237_196(AP004237|pid:none) Proteus vulgaris plasmid Rts1 DN...    35   2.6
AJ698720_112(AJ698720|pid:none) Yersinia pestis pG8786 plasmid. ...    35   2.6
AE017321_375(AE017321|pid:none) Wolbachia endosymbiont strain TR...    35   2.6
AY138501_1(AY138501|pid:none) Plasmodium falciparum normocyte bi...    35   4.4
AY138503_1(AY138503|pid:none) Plasmodium falciparum normocyte bi...    35   4.4
AY138502_1(AY138502|pid:none) Plasmodium falciparum normocyte bi...    35   4.4
AF312917_1(AF312917|pid:none) Plasmodium falciparum reticulocyte...    35   4.4
protein update 2009. 4. 2
PSORT 

 psg: 0.81  gvh: 0.41  alm: -0.10  top: 0.07  tms: 0.20  mit: 0.33  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: endoplasmic reticulum
	 24.0 %: mitochondrial
	 16.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: nuclear
	  4.0 %: cytoplasmic

>> prediction for CHI193 is end
5' end seq. ID CHI193F
5' end seq. 
>CHI193F.Seq
ATAATTTTCATTCACAATATAACAATAATAATAATTATTTAAAATGGGTAATTTATTATC
TCATACTTATGGAGTCCCTTCAATAATTTCAATAATAATTATAGTATCCTCATCAATTTT
TTTAATAATTTTAAAAAAAGATAAACAAAAATATATAAATAATCAAATTAATAATCAAAT
TAATAATCAAATTGTTCCTGAAATATCCAATAATAATAGTTATAATAATAGNGATAATAA
TAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA
TAATAATAATAATAATAATAATAANTNACGATGATTCNGCTGTTNATNTNNNNNNNNNN
Length of 5' end seq. 359
3' end seq. ID CHI193Z
3' end seq. 
>CHI193Z.Seq
NNNNNNNNNNTACCATATTATAATTCTCAAACTCAAGTTGTGGAAATTGAAAATAAATCA
TCGAGTACAAGATCAAACACATTTGTATATAAGAGACAGACTGGTATACCATTAAAGGAT
CAAAAAACATTGGAAGATTTAGAAGAAATGTTCAATCAAGTTAAAGCACATACTATTGAT
ATTAACCAAGTTCCAATGTATTCGATTGTACCTGCTATTAAAAATAATGAATATGAGCAA
TGGAAATATGCATTAAATAACAAGGATATCATTTTCATTGATAATCTATTGATTGTAACT
GGAAGTTTCAATCCAACCTATGACAGTCTTGAATGTGAGAATCGTACATTAATATTCACA
TTTGATTTACCAGATATTCCAGAATCTCATTTCTCTCATTCAATCTACTATGATCCAAGT
GACAAAGTTAGATACTTAAAAGTCTCGGGTAATAGAAAATTAAGTTATAGAGCATTAACT
GGTACACGTGGTGGTGAGAGTACAATTAATGAATATCCATCAGCTGGTGTTAAAATTGGT
AATAGTTTAAATCTTAGAAAAGATGGAGAATTTGA
Length of 3' end seq. 575
Connected seq. ID CHI193P
Connected seq. 
>CHI193P.Seq
ATAATTTTCATTCACAATATAACAATAATAATAATTATTTAAAATGGGTAATTTATTATC
TCATACTTATGGAGTCCCTTCAATAATTTCAATAATAATTATAGTATCCTCATCAATTTT
TTTAATAATTTTAAAAAAAGATAAACAAAAATATATAAATAATCAAATTAATAATCAAAT
TAATAATCAAATTGTTCCTGAAATATCCAATAATAATAGTTATAATAATAGNGATAATAA
TAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA
TAATAATAATAATAATAATAATAANTNACGATGATTCNGCTGTTNATNT----------T
ACCATATTATAATTCTCAAACTCAAGTTGTGGAAATTGAAAATAAATCATCGAGTACAAG
ATCAAACACATTTGTATATAAGAGACAGACTGGTATACCATTAAAGGATCAAAAAACATT
GGAAGATTTAGAAGAAATGTTCAATCAAGTTAAAGCACATACTATTGATATTAACCAAGT
TCCAATGTATTCGATTGTACCTGCTATTAAAAATAATGAATATGAGCAATGGAAATATGC
ATTAAATAACAAGGATATCATTTTCATTGATAATCTATTGATTGTAACTGGAAGTTTCAA
TCCAACCTATGACAGTCTTGAATGTGAGAATCGTACATTAATATTCACATTTGATTTACC
AGATATTCCAGAATCTCATTTCTCTCATTCAATCTACTATGATCCAAGTGACAAAGTTAG
ATACTTAAAAGTCTCGGGTAATAGAAAATTAAGTTATAGAGCATTAACTGGTACACGTGG
TGGTGAGAGTACAATTAATGAATATCCATCAGCTGGTGTTAAAATTGGTAATAGTTTAAA
TCTTAGAAAAGATGGAGAATTTGA
Length of connected seq. 914
Full length Seq ID -
Full length Seq. -
Length of full length seq. -