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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHI168
Library CH
(Link to library)
Clone ID CHI168
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16371-1
Original site URL
Representative seq. ID CHI168P
(Link to Original site)
Representative DNA sequence 
>CHI168 (CHI168Q) /CSM/CH/CHI1-C/CHI168Q.Seq.d/
GTATATAATCAAACTATAGAGATCAATAGTAATTTAACATAAAAAAAATAAAAAAATAAA
AAAATAAAAATAAAAAAGAAAAAATAAAAAAGAAAAAAGAAAAAAAAAAXXXXXXXXXXC
NCCATCCTCNACAAATTCAGGNACACCAACTATNAAAGNTTTTTCAAGTACAACACCNAA
TCAAGAATCNCCAAAATTGGGTGGTGATGGTANAGACTNTNTATCAACTCCTCCTTCAAT
AACNACAACAAAAACCNCTGAAATAATAGAAGAACAAGAAAAAAAAGGTCAAGAAAATTA
CACAAGTTGAAGAGNTACAAAGATAAGCAAGAAAAAAAAGNATGAAGAAAACAAAGCATG
AAGAAAAAAAAGCNTGCAAGAAAAAAAAGACCAAGAAAAAAAAGNATCAAGTAAAATAAA
CAAGTNAAGAGAACAA
sequence update 2002.10.25
Translated Amino Acid sequence 
i*snyrdq**fnikkikk*KNKNKKEKIKKKKEKK---

---PSSTNSGTPTXKXFSSTTPNQESPKLGGDGXDXXSTPPSITTTKTXEIIEEQEKKGQ
ENYTS*rxtkiskkkkxeenka*rkksxqekkdqekkxsskinkxreq
Translated Amino Acid sequence (All Frames) 
Frame A:
vynqtieinsnlt*kk*knkkikikkkk*krkkkkk---

---xhpxqiqxhqlxkxfqvqhxiknxqnwvvmvxtxyqlllq*xqqkplk**knkkkkv
kkitqveexqr*arkkxmkktkheekkackkkktkkkkxqvk*tsxen

Frame B:
yiikl*rsivi*hkknkkikk*k*krknkkekrkkk---

---xilxkfrxtnyxxffkyntxsrixkigw*wxrlxinssfnnxnknx*nnrrtrkkrs
rklhklkxykdkqekkx*rkqsmkkkkxarkkrprkkxik*nkqvkrt

Frame C:
i*snyrdq**fnikkikk*KNKNKKEKIKKKKEKK---

---PSSTNSGTPTXKXFSSTTPNQESPKLGGDGXDXXSTPPSITTTKTXEIIEEQEKKGQ
ENYTS*rxtkiskkkkxeenka*rkksxqekkdqekkxsskinkxreq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHI168 (CHI168Q) /CSM/CH/CHI1-C/CHI168Q.Seq.d/                        272   4e-72
SHC874 (SHC874Q) /CSM/SH/SHC8-D/SHC874Q.Seq.d/                        151   1e-35
VHN140 (VHN140Q) /CSM/VH/VHN1-B/VHN140Q.Seq.d/                        151   1e-35
VHJ490 (VHJ490Q) /CSM/VH/VHJ4-D/VHJ490Q.Seq.d/                        151   1e-35
SLA877 (SLA877Q) /CSM/SL/SLA8-D/SLA877Q.Seq.d/                        151   1e-35
SHL344 (SHL344Q) /CSM/SH/SHL3-B/SHL344Q.Seq.d/                        151   1e-35
SHL310 (SHL310Q) /CSM/SH/SHL3-A/SHL310Q.Seq.d/                        151   1e-35
SHK881 (SHK881Q) /CSM/SH/SHK8-D/SHK881Q.Seq.d/                        151   1e-35
SHK852 (SHK852Q) /CSM/SH/SHK8-C/SHK852Q.Seq.d/                        151   1e-35
SHJ735 (SHJ735Q) /CSM/SH/SHJ7-B/SHJ735Q.Seq.d/                        151   1e-35
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BM774815|BM774815.1 ra98a03.y1 Meloidogyne incognita egg pAMP1 Bird Meloidogyneincognita cDNA 5', mRNA sequence.    50   0.031  1
BZ955912|BZ955912.1 CH240_97M21.TV CHORI-240 Bos taurus genomic clone CH240_97M21, genomic survey sequence.    34   7.3    2
dna update 2004.11.29
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 193,260,338
protein update 2009. 4. 2
PSORT 

 psg: 0.32  gvh: 0.28  alm: 0.64  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.16  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for CHI168 is nuc
5' end seq. ID CHI168F
5' end seq. 
>CHI168F.Seq
GTATATAATCAAACTATAGAGATCAATAGTAATTTAACATAAAAAAAATAAAAAAATAAA
AAAATAAAAATAAAAAAGAAAAAATAAAAAAGAAAAAAGAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 119
3' end seq. ID CHI168Z
3' end seq. 
>CHI168Z.Seq
NNNNNNNNNNCNCCATCCTCNACAAATTCAGGNACACCAACTATNAAAGNTTTTTCAAGT
ACAACACCNAATCAAGAATCNCCAAAATTGGGTGGTGATGGTANAGACTNTNTATCAACT
CCTCCTTCAATAACNACAACAAAAACCNCTGAAATAATAGAAGAACAAGAAAAAAAAGGT
CAAGAAAATTACACAAGTTGAAGAGNTACAAAGATAAGCAAGAAAAAAAAGNATGAAGAA
AACAAAGCATGAAGAAAAAAAAGCNTGCAAGAAAAAAAAGACCAAGAAAAAAAAGNATCA
AGTAAAATAAACAAGTNAAGAGAACAA
Length of 3' end seq. 327
Connected seq. ID CHI168P
Connected seq. 
>CHI168P.Seq
GTATATAATCAAACTATAGAGATCAATAGTAATTTAACATAAAAAAAATAAAAAAATAAA
AAAATAAAAATAAAAAAGAAAAAATAAAAAAGAAAAAAGAAAAAAAAAA----------C
NCCATCCTCNACAAATTCAGGNACACCAACTATNAAAGNTTTTTCAAGTACAACACCNAA
TCAAGAATCNCCAAAATTGGGTGGTGATGGTANAGACTNTNTATCAACTCCTCCTTCAAT
AACNACAACAAAAACCNCTGAAATAATAGAAGAACAAGAAAAAAAAGGTCAAGAAAATTA
CACAAGTTGAAGAGNTACAAAGATAAGCAAGAAAAAAAAGNATGAAGAAAACAAAGCATG
AAGAAAAAAAAGCNTGCAAGAAAAAAAAGACCAAGAAAAAAAAGNATCAAGTAAAATAAA
CAAGTNAAGAGAACAA
Length of connected seq. 426
Full length Seq ID -
Full length Seq. -
Length of full length seq. -