CHI165 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHI165
Library	CH (Link to library)
Clone ID	CHI165 (Link to dictyBase)
Atlas ID	-
NBRP ID	G22921
dictyBase ID	DDB0231633
Link to Contig	Contig-U15283-1\|Contig-U15851-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHI1-C/CHI165Q.Seq.d/
Representative seq. ID	CHI165P (Link to Original site)
Representative DNA sequence	>CHI165 (CHI165Q) /CSM/CH/CHI1-C/CHI165Q.Seq.d/ CTTCAATATTAACTGATTTATATAAAATTGCAAATAATAATAATAACAACAATAATAATA CTAATAATAAACCAAAAATGGATTCAAATTCTGCTTTAACTTTATTATCTGATTTTTCAA AAATAATTTCAAGTTCAATATCAAATGAACAAGAATATCAAAAATCAATTCCAGTTTTAG AAGAAAAGATTAAAATATTGATTCCAAGTTTTAATAATACATGTAACAATACTACCAATA ATAATAGTTCAGCGAAAAATATTGAAGTTGATTCAAGTGTAAATAAATCACCTAATACTG AAGAAGATTCAACAAAAAAGACTATAAACAATTCACCTGCTGAAGATGCACAAATAGTTT CAGCATCAGTACCACCACCACCACCTCCACCACCTGGAGGCAATAATAATAACGAATCAG ATGTTCCATCATCTAGTGGAGGACCACCTCCACCACCACCACCTCCACCACCACCAGGAA AAAGTTCAGGTGGAGGACCACCACCACCACCACCACCACCACCACCAAAAGGAGGTAAAG GAGGACCACCACCACCACCACCAATTGGTGGTATTGGTAGTAAAGTTGTAAAAGTXXXXX XXXXXTTAAGAAGACAACAAGTAGAATCACCATCACCAAATATGTCACCATTTACTTCAN ACTGCAATTAGTGAAAAAGCTTCAATTTATGATAAAAATATTAATAATATTCNNCCATCA TCATCATCATCATCATCATCATCATCATCATCATCATCATCAACAATAACTGGAAAGAAA TCACACAATACTGAATCTGAAATAAAGAAAGAATTTATCTCAAATTCATCAATGGATAAA GATAAAGAAAAAATCAAAGAAAAAGAAAAAGGAACAATATCAAAAGGAAAAGCTCTATTA TTTGGTCATTCAAGATCAAAATCAACAACAACATCTCCATCTTCATCATCATCAAAGAAA CAAATCCCATCATTATCAGAATGTTTACAAGAATCTAATAAAACCCATTCAAGATCATCA TCATATTCTCCAAATAGTAAGGTTAATTCACAATTAATGTCAAATCCTTTTATTATGATG GAACAAAAACAACCAAAAGATTCTTTACCAATTGCAAAAGATTCAAAAGAAATCCATAAT ATGGGAACAACAACAACAACAACACCAATTAAAGTTGAAAAAATTGTTTCAGTAAATGAA AAACCAACTATAGTTACAATGC
sequence update	2002.10.25
Translated Amino Acid sequence	SILTDLYKIANNNNNNNNNTNNKPKMDSNSALTLLSDFSKIISSSISNEQEYQKSIPVLE EKIKILIPSFNNTCNNTTNNNSSAKNIEVDSSVNKSPNTEEDSTKKTINNSPAEDAQIVS ASVPPPPPPPPGGNNNNESDVPSSSGGPPPPPPPPPPPGKSSGGGPPPPPPPPPPKGGKG GPPPPPPIGGIGSKVVK--- ---KKTTSRITITKYVTIYFXLQLVKKLQFMIKILIIFXHHHHHHHHHHHHHHHQQler nhtilnlkrknlsqihqwikikkkskkkkkeqyqkeklyylviqdqnqqqhlhlhhhqr nkshhyqnvyknlikpiqdhhhilqivrlihncqilllwnknnqkilyqlqkiqkksi iweqqqqqhqlklkklfqmknqllqc
Translated Amino Acid sequence (All Frames)	Frame A: lqyliyiklqiiiittiiiliinqkwiqilllyylifqkfqvqyqmnkniknqfqf kkrlkyfqvliihvtilpiiivqrkilkliqvinhlilkkiqqkrltihllkmhkf qhqyhhhhlhhleaiiitnqmfhhlvedhlhhhhlhhhqekvqvedhhhhhhhhhqkevk edhhhhhqlvvlvvklk--- ---lrrqqvespspnmspftsxcnksfnlkyysxiiiiiiiiiiiiiiinnnwk eitqyinkeriylkfingrrknqrkrkrnnikrkssiiwsfkikinnnisifiiik etnpiiirmftrinpfkiiiifskgftinvksfyydgtkttkrfftnckrfkrnp ygnnnnnntnskncfskktnysyn Frame B: fninfinck**qqy**tkngfkfcfnfiiffknnfkfniktriskinssfr rkdnidskf*ymqyyq**fsekysfkckityrrfnkkdykqftcrctnsf sistttttsttwrq*rircsiiwrttsttttstttrkkfrwrttttttttttkrrr rttttttnwwywscks--- ---ednknhhhqichhllxtaisekasiydkninnixpssssssssssssssstitgk kshnteseikkefisnssmdkdkekikekekgtiskgkallfghsrskstttspsssssk kqipslseclqesnkthsrsssyspnskvnsqlmsnpfimmeqkqpkdslpiakdskeih nmgttttttpikvekivsvnekptivtm Frame C: SILTDLYKIANNNNNNNNNTNNKPKMDSNSALTLLSDFSKIISSSISNEQEYQKSIPVLE EKIKILIPSFNNTCNNTTNNNSSAKNIEVDSSVNKSPNTEEDSTKKTINNSPAEDAQIVS ASVPPPPPPPPGGNNNNESDVPSSSGGPPPPPPPPPPPGKSSGGGPPPPPPPPPPKGGKG GPPPPPPIGGIGSKVVK--- ---KKTTSRITITKYVTIYFXLQLVKKLQFMIKILIIFXHHHHHHHHHHHHHHHQQler nhtilnlkrknlsqihqwikikkkskkkkkeqyqkeklyylviqdqnqqqhlhlhhhqr nkshhyqnvyknlikpiqdhhhilqivrlihncqilllwnknnqkilyqlqkiqkksi iweqqqqqhqlklkklfqmknql*lqc
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CHJ159 (CHJ159Q) /CSM/CH/CHJ1-C/CHJ159Q.Seq.d/ 595 e-169 CHI165 (CHI165Q) /CSM/CH/CHI1-C/CHI165Q.Seq.d/ 595 e-169 CHH721 (CHH721Q) /CSM/CH/CHH7-A/CHH721Q.Seq.d/ 595 e-169 AHB410 (AHB410Q) /CSM/AH/AHB4-A/AHB410Q.Seq.d/ 595 e-169 AFK825 (AFK825Q) /CSM/AF/AFK8-B/AFK825Q.Seq.d/ 398 e-110 SHF416 (SHF416Q) /CSM/SH/SHF4-A/SHF416Q.Seq.d/ 331 1e-89 SLA612 (SLA612Q) /CSM/SL/SLA6-A/SLA612Q.Seq.d/ 188 1e-46 CHR667 (CHR667Q) /CSM/CH/CHR6-C/CHR667Q.Seq.d/ 188 1e-46 SSM667 (SSM667Q) /CSM/SS/SSM6-C/SSM667Q.Seq.d/ 44 0.005 VSA360 (VSA360Q) /CSM/VS/VSA3-C/VSA360Q.Seq.d/ 40 0.078
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116986\|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 36 8e-07 17 BA000026\|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome. 36 2e-06 28 AC116957\|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 36 3e-06 20 AL929355\|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5. 34 2e-05 16 AE017332\|AE017332.1 Mycoplasma hyopneumoniae 232, complete genome. 38 5e-05 26 BX571856\|BX571856.1 Staphylococcus aureus subsp. aureus strain MRSA252, complete genome. 34 8e-05 29 AC116963\|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 38 8e-05 16 AC116956\|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 40 8e-05 17 AC117176\|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 36 1e-04 14 AE014849\|AE014849.1 Plasmodium falciparum 3D7 chromosome 12 section 6 of 9 of the complete sequence. 32 2e-04 13
dna update	2004.11.29
Homology vs Protein	*** No hits found **** Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3039690 Number of Hits to DB: 853,748,722
protein update	2009. 4. 2
PSORT	psg: 0.50 gvh: 0.59 alm: 0.36 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 36.0 %: cytoplasmic 28.0 %: nuclear 16.0 %: mitochondrial 8.0 %: vesicles of secretory system 4.0 %: extracellular, including cell wall 4.0 %: cytoskeletal 4.0 %: vacuolar >> prediction for CHI165 is cyt
5' end seq. ID	CHI165F
5' end seq.	>CHI165F.Seq CTTCAATATTAACTGATTTATATAAAATTGCAAATAATAATAATAACAACAATAATAATA CTAATAATAAACCAAAAATGGATTCAAATTCTGCTTTAACTTTATTATCTGATTTTTCAA AAATAATTTCAAGTTCAATATCAAATGAACAAGAATATCAAAAATCAATTCCAGTTTTAG AAGAAAAGATTAAAATATTGATTCCAAGTTTTAATAATACATGTAACAATACTACCAATA ATAATAGTTCAGCGAAAAATATTGAAGTTGATTCAAGTGTAAATAAATCACCTAATACTG AAGAAGATTCAACAAAAAAGACTATAAACAATTCACCTGCTGAAGATGCACAAATAGTTT CAGCATCAGTACCACCACCACCACCTCCACCACCTGGAGGCAATAATAATAACGAATCAG ATGTTCCATCATCTAGTGGAGGACCACCTCCACCACCACCACCTCCACCACCACCAGGAA AAAGTTCAGGTGGAGGACCACCACCACCACCACCACCACCACCACCAAAAGGAGGTAAAG GAGGACCACCACCACCACCACCAATTGGTGGTATTGGTAGTAAAGTTGTAAAAGTNNNNN NNNNN
Length of 5' end seq.	605
3' end seq. ID	CHI165Z
3' end seq.	>CHI165Z.Seq NNNNNNNNNNTTAAGAAGACAACAAGTAGAATCACCATCACCAAATATGTCACCATTTAC TTCANACTGCAATTAGTGAAAAAGCTTCAATTTATGATAAAAATATTAATAATATTCNNC CATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCAACAATAACTGGAA AGAAATCACACAATACTGAATCTGAAATAAAGAAAGAATTTATCTCAAATTCATCAATGG ATAAAGATAAAGAAAAAATCAAAGAAAAAGAAAAAGGAACAATATCAAAAGGAAAAGCTC TATTATTTGGTCATTCAAGATCAAAATCAACAACAACATCTCCATCTTCATCATCATCAA AGAAACAAATCCCATCATTATCAGAATGTTTACAAGAATCTAATAAAACCCATTCAAGAT CATCATCATATTCTCCAAATAGTAAGGTTAATTCACAATTAATGTCAAATCCTTTTATTA TGATGGAACAAAAACAACCAAAAGATTCTTTACCAATTGCAAAAGATTCAAAAGAAATCC ATAATATGGGAACAACAACAACAACAACACCAATTAAAGTTGAAAAAATTGTTTCAGTAA ATGAAAAACCAACTATAGTTACAATGC
Length of 3' end seq.	627
Connected seq. ID	CHI165P
Connected seq.	>CHI165P.Seq CTTCAATATTAACTGATTTATATAAAATTGCAAATAATAATAATAACAACAATAATAATA CTAATAATAAACCAAAAATGGATTCAAATTCTGCTTTAACTTTATTATCTGATTTTTCAA AAATAATTTCAAGTTCAATATCAAATGAACAAGAATATCAAAAATCAATTCCAGTTTTAG AAGAAAAGATTAAAATATTGATTCCAAGTTTTAATAATACATGTAACAATACTACCAATA ATAATAGTTCAGCGAAAAATATTGAAGTTGATTCAAGTGTAAATAAATCACCTAATACTG AAGAAGATTCAACAAAAAAGACTATAAACAATTCACCTGCTGAAGATGCACAAATAGTTT CAGCATCAGTACCACCACCACCACCTCCACCACCTGGAGGCAATAATAATAACGAATCAG ATGTTCCATCATCTAGTGGAGGACCACCTCCACCACCACCACCTCCACCACCACCAGGAA AAAGTTCAGGTGGAGGACCACCACCACCACCACCACCACCACCACCAAAAGGAGGTAAAG GAGGACCACCACCACCACCACCAATTGGTGGTATTGGTAGTAAAGTTGTAAAAGT----- -----TTAAGAAGACAACAAGTAGAATCACCATCACCAAATATGTCACCATTTACTTCAN ACTGCAATTAGTGAAAAAGCTTCAATTTATGATAAAAATATTAATAATATTCNNCCATCA TCATCATCATCATCATCATCATCATCATCATCATCATCATCAACAATAACTGGAAAGAAA TCACACAATACTGAATCTGAAATAAAGAAAGAATTTATCTCAAATTCATCAATGGATAAA GATAAAGAAAAAATCAAAGAAAAAGAAAAAGGAACAATATCAAAAGGAAAAGCTCTATTA TTTGGTCATTCAAGATCAAAATCAACAACAACATCTCCATCTTCATCATCATCAAAGAAA CAAATCCCATCATTATCAGAATGTTTACAAGAATCTAATAAAACCCATTCAAGATCATCA TCATATTCTCCAAATAGTAAGGTTAATTCACAATTAATGTCAAATCCTTTTATTATGATG GAACAAAAACAACCAAAAGATTCTTTACCAATTGCAAAAGATTCAAAAGAAATCCATAAT ATGGGAACAACAACAACAACAACACCAATTAAAGTTGAAAAAATTGTTTCAGTAAATGAA AAACCAACTATAGTTACAATGC
Length of connected seq.	1212
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas