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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHI134
Library CH
(Link to library)
Clone ID CHI134
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11723-1
Original site URL
Representative seq. ID CHI134P
(Link to Original site)
Representative DNA sequence 
>CHI134 (CHI134Q) /CSM/CH/CHI1-B/CHI134Q.Seq.d/
ATATAAATTTTATATGGGTTTATAAAAGACTGCGTAGGGATAAATAATAATGGAAAGTAA
TAAATCATCATCACATGGAGATGTATCAACTTCTCCATCATTTTTAAATAATCATCATCA
ATTTAATAATGGTGGTGATATAATCCCAAAAAAGAAAAAAAATAGGATAATGCATGTTGG
TTCTTATGAAGTTGGCAAAACTTTAGGTAATGGTACATTTGGTAAAGTTAAATTAGGTAC
AAATATTTGTACAAAAGAAAATGTTGCAATTAAATTTATAAAAAATAATAAATTATCAGG
AAAACAAAAAGAAACATGTTTTAGAGAAATTGATATTATGAAATTATTAGATCATCCAAA
TATAGTGAAATTATTAGATGTTGTTGATAAAAGAGAAGAAGAAGGTACAACTTATTTAAT
AGTTGAATATGTATCAGGTGGTGAATTATTTGATTATATAGTTGCACGTGAATATATTAA
AGAGAAAGAAGCAAGAAAATTTTTTAGACAAATGATATCGGCCATAGAGTATTGTCATGC
AAATTTAATAGTTCATAGGGATTTAAAACCCXXXXXXXXXXTCCGATATATCATTCCCAC
ATGATGATGTTGAAATTGAAAGTTATTCAATTCAACAGCAACAANTNCAACAACAACAAC
AACAACAACAAGAACAACCCAAAGAAGATAATAATAAACCAAATACAAATTTAAGAAGAA
ATTCAATTGCAGTTTCAACATTTATGGAAGATGAACCAAATGAAATGCCAATTAATAATT
TGTATAAAATGAATGAACAAATTCAACAACAACCAATTATTGGTGGTAGTGGTAATGTAA
TGAGATCACAATTTAATCAAACATTACCAACAATTGATCAACAACCAGTTATTGAAGCAC
CAAAAACGAGAAGAATGAGTTTAGATTCACGTATGTTAAATGGTGATCAACAATCATTGG
TTGAAAAGAATCAACATATGGCAAGTCCAAGAACTTCGAAAGGTATATTTAAATNTTCAA
CTACCACTACTAAATCACCAGAGAAAACAATTATCGAATTGAAAAGATCTCTCGAAGAAA
GTGGTTTATTCACTAAAAAGAAAGGTCCTTACCTTTTNTTATGTTTTGATGAAGATAACT
CTGTTAAATTTCAAATCGAAATCGTTAAAATTTGTAACCTTGATTTAACTGGTATTCAAT
TAAAAAGATTAAGTGGCGATACTTGGAAATATAAAGATATTTGTACGAATTAGTNAATCA
AGAAATTATAAGTTTTTTTTTAAAAAAAAAATAAATAGTAATAAANA
sequence update 2002.10.25
Translated Amino Acid sequence 
ykfymgl*kta*g*IIMESNKSSSHGDVSTSPSFLNNHHQFNNGGDIIPKKKKNRIMHVG
SYEVGKTLGNGTFGKVKLGTNICTKENVAIKFIKNNKLSGKQKETCFREIDIMKLLDHPN
IVKLLDVVDKREEEGTTYLIVEYVSGGELFDYIVAREYIKEKEARKFFRQMISAIEYCHA
NLIVHRDLKP---

---SDISFPHDDVEIESYSIQQQQXQQQQQQQQEQPKEDNNKPNTNLRRNSIAVSTFMED
EPNEMPINNLYKMNEQIQQQPIIGGSGNVMRSQFNQTLPTIDQQPVIEAPKTRRMSLDSR
MLNGDQQSLVEKNQHMASPRTSKGIFKXSTTTTKSPEKTIIELKRSLEESGLFTKKKGPY
LXLCFDEDNSVKFQIEIVKICNLDLTGIQLKRLSGDTWKYKDICTN*xikkl*vff*kkn
k***x
Translated Amino Acid sequence (All Frames) 
Frame A:
i*ilygfikdcvginnngk**iiitwrcinfsiifk*sssi**ww*ynpkkekk*dnacw
fl*swqnfr*wyiw*s*irykylykrkccn*iykk**iirktkrnmf*rn*yyeiirssk
yseiircc**krrrrynlfns*icirw*ii*lysct*iy*rerskkif*tndighrvlsc
kfnss*gfkt---

---SDISFPHDDVEIESYSIQQQQXQQQQQQQQEQPKEDNNKPNTNLRRNSIAVSTFMED
EPNEMPINNLYKMNEQIQQQPIIGGSGNVMRSQFNQTLPTIDQQPVIEAPKTRRMSLDSR
MLNGDQQSLVEKNQHMASPRTSKGIFKXSTTTTKSPEKTIIELKRSLEESGLFTKKKGPY
LXLCFDEDNSVKFQIEIVKICNLDLTGIQLKRLSGDTWKYKDICTN*xikkl*vff*kkn
k***x

Frame B:
ykfymgl*kta*g*IIMESNKSSSHGDVSTSPSFLNNHHQFNNGGDIIPKKKKNRIMHVG
SYEVGKTLGNGTFGKVKLGTNICTKENVAIKFIKNNKLSGKQKETCFREIDIMKLLDHPN
IVKLLDVVDKREEEGTTYLIVEYVSGGELFDYIVAREYIKEKEARKFFRQMISAIEYCHA
NLIVHRDLKP---

---piyhshmmmlklkviqfnsnxxnnnnnnnknnpkkiiinqiqi*eeiqlqfqhlwkm
nqmkcqliicik*mnkfnnnqllvvvvm**dhnlikhyqqlinnqllkhqkree*v*ihv
c*mvinnhwlkriniwqvqelrkvylnxqlpllnhqrkqlsn*kdlskkvvyslkrkvlt
fxyvlmkitllnfkskslkfvtli*lvfn*kd*vailgnikifvrisxsrnykfffkkki
nsnk

Frame C:
infiwvykrlrrdk**wkvinhhhmemyqllhhf*iiiinlimvvi*sqkrkkig*cmlv
lmklakl*vmvhlvkln*vqifvqkkmlqlnl*kiinyqenkkkhvleklil*ny*iiqi
**ny*mllikekkkvqli**lnmyqvvnylii*lhvnilkrkkqenfldk*yrp*sivmq
i**figi*n---

---ryiipt**c*n*klfnstatxxtttttttrttqrr***tkykfkkkfncsfniygr*
tk*nan**fv*ne*tnstttnyww*w*cneiti*snitnn*sttsy*stkneknefrfty
vkw*stiig*kestygksknferyi*xfnyhy*itrennyriekisrrkwfih*kerslp
fxmf**r*lc*isnrnr*nl*p*fnwysikkikwrylei*rylyelvnqeiisfflkkk*
ivix
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHI134 (CHI134Q) /CSM/CH/CHI1-B/CHI134Q.Seq.d/                       1160   0.0
CHP810 (CHP810Q) /CSM/CH/CHP8-A/CHP810Q.Seq.d/                       1116   0.0
CHR195 (CHR195Q) /CSM/CH/CHR1-D/CHR195Q.Seq.d/                       1104   0.0
CHN147 (CHN147Q) /CSM/CH/CHN1-B/CHN147Q.Seq.d/                       1065   0.0
CHF760 (CHF760Q) /CSM/CH/CHF7-C/CHF760Q.Seq.d/                       1055   0.0
CHO603 (CHO603Q) /CSM/CH/CHO6-A/CHO603Q.Seq.d/                       1049   0.0
CHO513 (CHO513Q) /CSM/CH/CHO5-A/CHO513Q.Seq.d/                       1047   0.0
CHN820 (CHN820Q) /CSM/CH/CHN8-A/CHN820Q.Seq.d/                       1043   0.0
CHH704 (CHH704Q) /CSM/CH/CHH7-A/CHH704Q.Seq.d/                       1031   0.0
SLC215 (SLC215Q) /CSM/SL/SLC2-A/SLC215Q.Seq.d/                        670   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    40   4e-10  22
CR382399|CR382399.1 Plasmodium falciparum chromosome 6, complete sequence; segment 2/5.    60   2e-08  17
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    44   6e-07  26
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome.    38   8e-07  34
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    32   2e-06  20
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    36   3e-06  22
BX571856|BX571856.1 Staphylococcus aureus subsp. aureus strain MRSA252, complete genome.    36   3e-06  32
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    34   5e-06  19
Z96102|Z96102.1 Caenorhabditis elegans fosmid H39E23.              46   6e-06  2
U22183|U22183.1 Caenorhabditis elegans serine/threonine kinase (par-1) mRNA, complete cds.    46   6e-06  2
dna update 2004.11.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC043730_1(BC043730|pid:none) Xenopus laevis MAP/microtubule aff...   150   9e-35
AB071963_1(AB071963|pid:none) Xenopus laevis MARK2 mRNA for seri...   150   1e-34
AK045329_1(AK045329|pid:none) Mus musculus 9.5 days embryo parth...   148   5e-34
BC058556_1(BC058556|pid:none) Mus musculus MAP/microtubule affin...   148   5e-34
AK172444_1(AK172444|pid:none) Mus musculus activated spleen cDNA...   148   5e-34
(Q7KZI7) RecName: Full=Serine/threonine-protein kinase MARK2;   ...   148   5e-34
AK220191_1(AK220191|pid:none) Mus musculus mRNA for mKIAA4207 pr...   148   5e-34
G01025(G01025)serine/threonine protein kinase - human                 148   5e-34
AF387638_1(AF387638|pid:none) Homo sapiens Ser/Thr protein kinas...   148   5e-34
X97630_1(X97630|pid:none) H.sapiens mRNA for serine/threonine pr...   148   5e-34
protein update 2009. 4. 2
PSORT 

 psg: 0.69  gvh: 0.32  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.18  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 40.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: Golgi

>> prediction for CHI134 is nuc
5' end seq. ID CHI134F
5' end seq. 
>CHI134F.Seq
ATATAAATTTTATATGGGTTTATAAAAGACTGCGTAGGGATAAATAATAATGGAAAGTAA
TAAATCATCATCACATGGAGATGTATCAACTTCTCCATCATTTTTAAATAATCATCATCA
ATTTAATAATGGTGGTGATATAATCCCAAAAAAGAAAAAAAATAGGATAATGCATGTTGG
TTCTTATGAAGTTGGCAAAACTTTAGGTAATGGTACATTTGGTAAAGTTAAATTAGGTAC
AAATATTTGTACAAAAGAAAATGTTGCAATTAAATTTATAAAAAATAATAAATTATCAGG
AAAACAAAAAGAAACATGTTTTAGAGAAATTGATATTATGAAATTATTAGATCATCCAAA
TATAGTGAAATTATTAGATGTTGTTGATAAAAGAGAAGAAGAAGGTACAACTTATTTAAT
AGTTGAATATGTATCAGGTGGTGAATTATTTGATTATATAGTTGCACGTGAATATATTAA
AGAGAAAGAAGCAAGAAAATTTTTTAGACAAATGATATCGGCCATAGAGTATTGTCATGC
AAATTTAATAGTTCATAGGGATTTAAAACCCNNNNNNNNNN
Length of 5' end seq. 581
3' end seq. ID CHI134Z
3' end seq. 
>CHI134Z.Seq
NNNNNNNNNNTCCGATATATCATTCCCACATGATGATGTTGAAATTGAAAGTTATTCAAT
TCAACAGCAACAANTNCAACAACAACAACAACAACAACAAGAACAACCCAAAGAAGATAA
TAATAAACCAAATACAAATTTAAGAAGAAATTCAATTGCAGTTTCAACATTTATGGAAGA
TGAACCAAATGAAATGCCAATTAATAATTTGTATAAAATGAATGAACAAATTCAACAACA
ACCAATTATTGGTGGTAGTGGTAATGTAATGAGATCACAATTTAATCAAACATTACCAAC
AATTGATCAACAACCAGTTATTGAAGCACCAAAAACGAGAAGAATGAGTTTAGATTCACG
TATGTTAAATGGTGATCAACAATCATTGGTTGAAAAGAATCAACATATGGCAAGTCCAAG
AACTTCGAAAGGTATATTTAAATNTTCAACTACCACTACTAAATCACCAGAGAAAACAAT
TATCGAATTGAAAAGATCTCTCGAAGAAAGTGGTTTATTCACTAAAAAGAAAGGTCCTTA
CCTTTTNTTATGTTTTGATGAAGATAACTCTGTTAAATTTCAAATCGAAATCGTTAAAAT
TTGTAACCTTGATTTAACTGGTATTCAATTAAAAAGATTAAGTGGCGATACTTGGAAATA
TAAAGATATTTGTACGAATTAGTNAATCAAGAAATTATAAGTTTTTTTTTAAAAAAAAAA
TAAATAGTAATAAANA
Length of 3' end seq. 736
Connected seq. ID CHI134P
Connected seq. 
>CHI134P.Seq
ATATAAATTTTATATGGGTTTATAAAAGACTGCGTAGGGATAAATAATAATGGAAAGTAA
TAAATCATCATCACATGGAGATGTATCAACTTCTCCATCATTTTTAAATAATCATCATCA
ATTTAATAATGGTGGTGATATAATCCCAAAAAAGAAAAAAAATAGGATAATGCATGTTGG
TTCTTATGAAGTTGGCAAAACTTTAGGTAATGGTACATTTGGTAAAGTTAAATTAGGTAC
AAATATTTGTACAAAAGAAAATGTTGCAATTAAATTTATAAAAAATAATAAATTATCAGG
AAAACAAAAAGAAACATGTTTTAGAGAAATTGATATTATGAAATTATTAGATCATCCAAA
TATAGTGAAATTATTAGATGTTGTTGATAAAAGAGAAGAAGAAGGTACAACTTATTTAAT
AGTTGAATATGTATCAGGTGGTGAATTATTTGATTATATAGTTGCACGTGAATATATTAA
AGAGAAAGAAGCAAGAAAATTTTTTAGACAAATGATATCGGCCATAGAGTATTGTCATGC
AAATTTAATAGTTCATAGGGATTTAAAACCC----------TCCGATATATCATTCCCAC
ATGATGATGTTGAAATTGAAAGTTATTCAATTCAACAGCAACAANTNCAACAACAACAAC
AACAACAACAAGAACAACCCAAAGAAGATAATAATAAACCAAATACAAATTTAAGAAGAA
ATTCAATTGCAGTTTCAACATTTATGGAAGATGAACCAAATGAAATGCCAATTAATAATT
TGTATAAAATGAATGAACAAATTCAACAACAACCAATTATTGGTGGTAGTGGTAATGTAA
TGAGATCACAATTTAATCAAACATTACCAACAATTGATCAACAACCAGTTATTGAAGCAC
CAAAAACGAGAAGAATGAGTTTAGATTCACGTATGTTAAATGGTGATCAACAATCATTGG
TTGAAAAGAATCAACATATGGCAAGTCCAAGAACTTCGAAAGGTATATTTAAATNTTCAA
CTACCACTACTAAATCACCAGAGAAAACAATTATCGAATTGAAAAGATCTCTCGAAGAAA
GTGGTTTATTCACTAAAAAGAAAGGTCCTTACCTTTTNTTATGTTTTGATGAAGATAACT
CTGTTAAATTTCAAATCGAAATCGTTAAAATTTGTAACCTTGATTTAACTGGTATTCAAT
TAAAAAGATTAAGTGGCGATACTTGGAAATATAAAGATATTTGTACGAATTAGTNAATCA
AGAAATTATAAGTTTTTTTTTAAAAAAAAAATAAATAGTAATAAANA
Length of connected seq. 1297
Full length Seq ID -
Full length Seq. -
Length of full length seq. -