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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHI127
Library CH
(Link to library)
Clone ID CHI127
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHI127 (CHI127Q) /CSM/CH/CHI1-B/CHI127Q.Seq.d/
XXXXXXXXXXTTAGAAACTGCTGGTGGTGTTATGACAACTCTTATTCCAAGAAATACAAC
AATTCCCATGTAAGAAAACTCAAACCTTCTCTACATACTCTGATAATCAACCAGGTGTAT
TAATTCAAGTTTATGAAGGTGAACGTGCTATGACCAAAGATAATAATTTATTGGGTAAAT
TTGAACTTTCTGGTATTCCACCAGCACCAAGAGGTGTACCACAAGTTGAAGTTACATTTG
ATGTTGATGCAAATGGTATCTTAAATGTATCAGCTGAAGATAAATCAACTGGTAACAAAC
AAAAGATTACAATTACCAATGATAAAGGTCGTCTTTCAAAAGAAGAAATTGAAAAAATGG
TTGCTGATGCAGAGAAATTCAAACAACAAGATGAACAACAAAAAGATCGTGTTGAATCAA
AGAATAAATTGGAAAATTATGCATTCACTGTTAAAAATTCAATTAAAGATGAAAAAGTTG
CAGCCAAAATTTCAGATTCAGATAAATCAACTATTGAATCTGAAACTGAAAGTGTACTCA
AATGGTTAGAATCAAATCAAACCGCAGAAAAGGATGAATATGAAGATAAGATGAAAGCCT
TAGAAGCAGTTGTCAATCCAATCATGAGTAAACTCTATCAAGAAGGAGGTATGCCACAAG
GTGGTGGTATGCCAGGTGGTATGTCAAATGATTCACCAAAGAGTTCAAACAACAAAGTAG
ACGAATTAGATTGACGGAATTTTTCAGAGGAAAACATCTCTATCAAATAGATTTCTTAAA
AAATAATAAGTTAGTAAAATCAATAAAGCTTNCTCATATATAGTACACA
sequence update 2002. 9.10
Translated Amino Acid sequence 
---*kllvvl*QLLFQEIQQFPCKKTQTFSTYSDNQPGVLIQVYEGERAMTKDNNLLGKF
ELSGIPPAPRGVPQVEVTFDVDANGILNVSAEDKSTGNKQKITITNDKGRLSKEEIEKMV
ADAEKFKQQDEQQKDRVESKNKLENYAFTVKNSIKDEKVAAKISDSDKSTIESETESVLK
WLESNQTAEKDEYEDKMKALEAVVNPIMSKLYQEGGMPQGGGMPGGMSNDSPKSSNNKVD
ELD*rnfseenisik*is*kiis**nq*sxliyst
Translated Amino Acid sequence (All Frames) 
Frame A:
---*kllvvl*QLLFQEIQQFPCKKTQTFSTYSDNQPGVLIQVYEGERAMTKDNNLLGKF
ELSGIPPAPRGVPQVEVTFDVDANGILNVSAEDKSTGNKQKITITNDKGRLSKEEIEKMV
ADAEKFKQQDEQQKDRVESKNKLENYAFTVKNSIKDEKVAAKISDSDKSTIESETESVLK
WLESNQTAEKDEYEDKMKALEAVVNPIMSKLYQEGGMPQGGGMPGGMSNDSPKSSNNKVD
ELD*rnfseenisik*is*kiis**nq*sxliyst


Frame B:
---rncwwcydnsyskkynnshvrklkpslhtliinqvy*fkfmkvnvl*pkiiiywvnl
nflvfhqhqevyhklklhlmlmqmvs*myqlkinqlvtnkrlqlpmikvvfqkkklkkwl
lmqrnsnnkmnnkkivlnqrinwkimhsllkiqlkmkklqpkfqiqinqllnlklkvysn
g*nqikpqkrmnmkir*kp*kqlsiqs*vnsikkevchkvvvcqvvcqmihqrvqttk*t
n*idgifqrktslsnrflkk**vskinkaxsyivh


Frame C:
---etaggvmttliprnttipm*ensnllyil**strcinssl*r*tcydqr**fig*i*
tfwyststkrctts*syi*c*ckwylkcis*r*inw*qtkdynyq**rssfkrrn*kngc
*creiqttr*ttkrsc*ike*igklcihc*kfn*r*kscsqnfrfr*iny*i*n*kctqm
vriksnrrkg*i*r*deslrsscqsnhe*tlsrrryatrwwyarwyvk*ftkefkqqsrr
irlteffrgkhlyqidflknnklvksiklxhi*yt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHI127 (CHI127Q) /CSM/CH/CHI1-B/CHI127Q.Seq.d/                       1618   0.0
VHP437 (VHP437Q) /CSM/VH/VHP4-B/VHP437Q.Seq.d/                       1604   0.0
CHL177 (CHL177Q) /CSM/CH/CHL1-D/CHL177Q.Seq.d/                       1604   0.0
CHI672 (CHI672Q) /CSM/CH/CHI6-C/CHI672Q.Seq.d/                       1596   0.0
CHI705 (CHI705Q) /CSM/CH/CHI7-A/CHI705Q.Seq.d/                       1594   0.0
VHH751 (VHH751Q) /CSM/VH/VHH7-C/VHH751Q.Seq.d/                       1592   0.0
CHR106 (CHR106Q) /CSM/CH/CHR1-A/CHR106Q.Seq.d/                       1592   0.0
AHC223 (AHC223Q) /CSM/AH/AHC2-A/AHC223Q.Seq.d/                       1590   0.0
CHH293 (CHH293Q) /CSM/CH/CHH2-D/CHH293Q.Seq.d/                       1580   0.0
VHA854 (VHA854Q) /CSM/VH/VHA8-C/VHA854Q.Seq.d/                       1578   0.0
own update 2002. 9.29
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X75263|X75263.1 D.discoideum (AX3) mRNA for heat shock cognate protein (hsc70).  1479   0.0    3
L22736|L22736.1 Dictyostelium discoideum heat shock protein (hspB) gene,.  1471   0.0    3
AJ310880|AJ310880.1 Cryptosporidium baileyi partial hsp70 gene for heat shock protein  70.    96   7e-52  5
AF221539|AF221539.1 Cryptosporidium baileyi heat shock protein 70 (HSP70) gene, partial cds.    96   7e-52  5
BI773123|BI773123.1 kq45c07.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to TR:Q23954 Q23954 HEAT SHOCK PROTEIN 70 ;, mRNA sequence.    96   2e-51  4
BI772941|BI772941.1 kq08c08.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to TR:Q23954 Q23954 HEAT SHOCK PROTEIN 70 ;, mRNA sequence.    96   2e-51  4
BI773035|BI773035.1 kq26d03.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to SW:HS70_ONCVO P11503 HEAT SHOCK 70 KD PROTEIN ;, mRNA sequence.    96   2e-51  4
BI773038|BI773038.1 kq28d03.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to SW:HS70_ONCVO P11503 HEAT SHOCK 70 KD PROTEIN ;, mRNA sequence.    96   2e-51  4
AF278536|AF278536.1 Parastrongyloides trichosuri heat shock 70 protein gene, complete cds.   157   3e-51  4
BI772945|BI772945.1 kq08h11.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to TR:Q23954 Q23954 HEAT SHOCK PROTEIN 70 ;, mRNA sequence.    96   1e-49  4
dna update 2004.11.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P36415) RecName: Full=Heat shock cognate 70 kDa protein 1;     ...   378   e-109
S37394(S37394) dnaK-type molecular chaperone hsc70 - slime mold ...   378   e-109
(Q557E0) RecName: Full=Heat shock cognate 70 kDa protein 2;     ...   274   2e-78
AF025951_1(AF025951|pid:none) Dictyostelium discoideum heat-shoc...   274   2e-78
AF033852_1(AF033852|pid:none) Spinacia oleracea cytosolic heat s...   275   7e-78
(P22953) RecName: Full=Heat shock cognate 70 kDa protein 1;     ...   273   7e-78
S46302(S46302;S41402;JA0169;S36623) dnaK-type molecular chaperon...   273   7e-78
FB790108_1(FB790108|pid:none) Sequence 9381 from Patent WO200803...   275   1e-77
X77199_1(X77199|pid:none) A.thaliana hsc70-1 gene.                    273   1e-77
FB790112_1(FB790112|pid:none) Sequence 9385 from Patent WO200803...   273   2e-77
protein update 2009. 5.19
PSORT 

 psg: 0.75  gvh: 0.39  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal

>> prediction for CHI127 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHI127Z
3' end seq. 
>CHI127Z.Seq
NNNNNNNNNNTTAGAAACTGCTGGTGGTGTTATGACAACTCTTATTCCAAGAAATACAAC
AATTCCCATGTAAGAAAACTCAAACCTTCTCTACATACTCTGATAATCAACCAGGTGTAT
TAATTCAAGTTTATGAAGGTGAACGTGCTATGACCAAAGATAATAATTTATTGGGTAAAT
TTGAACTTTCTGGTATTCCACCAGCACCAAGAGGTGTACCACAAGTTGAAGTTACATTTG
ATGTTGATGCAAATGGTATCTTAAATGTATCAGCTGAAGATAAATCAACTGGTAACAAAC
AAAAGATTACAATTACCAATGATAAAGGTCGTCTTTCAAAAGAAGAAATTGAAAAAATGG
TTGCTGATGCAGAGAAATTCAAACAACAAGATGAACAACAAAAAGATCGTGTTGAATCAA
AGAATAAATTGGAAAATTATGCATTCACTGTTAAAAATTCAATTAAAGATGAAAAAGTTG
CAGCCAAAATTTCAGATTCAGATAAATCAACTATTGAATCTGAAACTGAAAGTGTACTCA
AATGGTTAGAATCAAATCAAACCGCAGAAAAGGATGAATATGAAGATAAGATGAAAGCCT
TAGAAGCAGTTGTCAATCCAATCATGAGTAAACTCTATCAAGAAGGAGGTATGCCACAAG
GTGGTGGTATGCCAGGTGGTATGTCAAATGATTCACCAAAGAGTTCAAACAACAAAGTAG
ACGAATTAGATTGACGGAATTTTTCAGAGGAAAACATCTCTATCAAATAGATTTCTTAAA
AAATAATAAGTTAGTAAAATCAATAAAGCTTNCTCATATATAGTACACA
Length of 3' end seq. 829
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -