CHI118 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHI118
Library	CH (Link to library)
Clone ID	CHI118 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U15708-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHI1-A/CHI118Q.Seq.d/
Representative seq. ID	CHI118P (Link to Original site)
Representative DNA sequence	>CHI118 (CHI118Q) /CSM/CH/CHI1-A/CHI118Q.Seq.d/ ATAATCCATTAATATTAAATTAATTTCATTTTATTGCATGTAATATAATAATAAATAAAA TAAAATAAAATAAAATAAAATAAAATAAAAATTTAAATAAAAAATAAAAAGAATAAAGAA AAATAAAACTCACAACACACAAATATTAAAAAAAACTATACTTATAAAAAAAAATAAAAA ATAAAAAATAAAAAAATAACCCACACACTCGAACTAATAATAAACAATAAACAAACACAC ACACACATACATACACACACCAATAAACTAAATATATAGTAATAATAATAATAATAAATG GATCAATTAATCCCAGTTATTAATAAACTTCAAGATGTATTTAATACATTAGGATCAGAC CCATTGGATTTACCACAAATCGTTGTTGTTGGTAGTCAATCTTCAGGTAAAAGTAGTGTA CTTGAAAATATAGTAGGTCGTGATTTTTTACCAAGAGGTTCTGGTATTGTAACAAGAAGA CCTTTGATTTTACAATTAACTCATTTACCAATTGCTGATGATGGATCACAAACTCAAGAA TGGGGTGAATTTTTACATAAACCAAATGATATGTTTTATGATTTCTCAGAGATTAXXXXX XXXXXTCAATCCCACAAAATGGTCCAAACAATAATAATAATAATACCAATAATAATAATA GACAAGATCATCAACAAGGTTCTTTCTTTTCATCTTTTTTCAGAGCTTCACCTGATCCAT CTTTAGGTCAATATGGTGGTGCTAATAATAGTAATAATTCAAATAATCCAACATCACCAA TTAATTCAAGTAGTAATAGCGGTAATAATTATAATACTTTTGGTGGTCAACAATCATCAT CTTCATCATCACAACAATTACAACAATCATCACAATCACAATATAAAACTAGTTATAATA ATAATAATAATAGTAGCAGCAATAATAGTAGTTATAATCGTTATCAAGATGATTTCTATG GTAGAGGTGATAAATTAAATCAAGTACCATCAATTATTAAAGCACCAGATGATTTAACAA GTAAAGAGAAATTTGAAACTGAATTAATTCGTGAACTTTTAATTTCCTATTTTAATATCG TTAAAAAGAATGTTAAGGATTCAGTTCCAAAATCAATTATGCATTTCTTGGTCAATCAAT CAAAAGAACACATTCAAAATGAATTGGTTGCAGCCCTCTACAAAGAGGAATTGTTTGATG AATTATTAGAGGAATCACCACAAATCTCTAGTAAGAGAAAATCTTGTAAAGCTATGATCG AAATTTTAAGAAAAGCAAATGAAATTATTAATNAAATTAGAGATTTTAGAAATTAAAATA TATTTAAATAAAATTTTATTACATTTATAAA
sequence update	2002.10.25
Translated Amino Acid sequence	iihyinfillhvi**iknkiknkikiiknkknkeknsqhtnikknytykkkk iknkkithtleliinnkqththihthtnklni******MDQLIPVINKLQDVFNTLGSD PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQE WGEFLHKPNDMFYDFSEI--- ---SIPQNGPNNNNNNTNNNNRQDHQQGSFFSSFFRASPDPSLGQYGGANNSNNSNNPTS PINSSSNSGNNYNTFGGQQSSSSSSQQLQQSSQSQYKTSYNNNNNSSSNNSSYNRYQDDF YGRGDKLNQVPSIIKAPDDLTSKEKFETELIRELLISYFNIVKKNVKDSVPKSIMHFLVN QSKEHIQNELVAALYKEELFDELLEESPQISSKRKSCKAMIEILRKANEIINXIRDFRN nifk*nfitfi
Translated Amino Acid sequence (All Frames)	Frame A: iihyinfillhvi**iknkiknkikiiknkknkeknsqhtnikknytykkkk iknkkithtleliinnkqththihthtnklni******MDQLIPVINKLQDVFNTLGSD PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQE WGEFLHKPNDMFYDFSEI--- ---SIPQNGPNNNNNNTNNNNRQDHQQGSFFSSFFRASPDPSLGQYGGANNSNNSNNPTS PINSSSNSGNNYNTFGGQQSSSSSSQQLQQSSQSQYKTSYNNNNNSSSNNSSYNRYQDDF YGRGDKLNQVPSIIKAPDDLTSKEKFETELIRELLISYFNIVKKNVKDSVPKSIMHFLVN QSKEHIQNELVAALYKEELFDELLEESPQISSKRKSCKAMIEILRKANEIINXIRDFRN nifknfitfi Frame B: siniklisfycmynnknkiknkikkfkkikrikknkthntqilkktilikknkk kikkpthsn*tinkhthtyihtpiniysnnnnnkwinsqllinfkmylihdqt hwiyhkslllvvnlqvkvvylki*vvifyqevlvlqedlfynliyqllmmdhklkn gvnfyinqmicfmisqrl--- ---qshkmvqtiiiiipiiiidkiinkvlsfhlfselhlihlvnmvvliiviiqiiqhh qliqvviaviiiillvvnnhhlhhhnnynnhhnhniklviiiiiivaaiivviivikmis mvevinikyhqllkhqmiqvkrnlklnfvnffpilislkrmlriqfqnqlciswsi nqkntfkmnwlqpstkrnclmnyrnhhkslvrenlvklskfekqmkllxkleileik iylnkillhl* Frame C: nplilnfhfiacniiinkiknkiknknlnkkkerkikltthkykklylkkikn kkknnphtrtnnkqtnththtythqtkyiviiiiingsinpsy*tsrciyirirp igfttnrccwsifrkctkysrsfftkrfwycnkktfdftinsftncwitnsrm gifttkyvlflrd--- ---nptkwskq*yq*trsstrfflfiffqsftsifrsiwwc****fksnit nfkrlyfwwstiiifiittittiititinl****qqlslsrfl wr*iksstinystrfnkreininstfnflfyrkecgfsskinyaflgqs ikrthskigcsplqrgiviirgittnlekilsydrnfkksknyxnrfklk yi*ikfyyiyk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VSJ846 (VSJ846Q) /CSM/VS/VSJ8-B/VSJ846Q.Seq.d/ 680 0.0 VHL521 (VHL521Q) /CSM/VH/VHL5-A/VHL521Q.Seq.d/ 680 0.0 SSK388 (SSK388Q) /CSM/SS/SSK3-D/SSK388Q.Seq.d/ 680 0.0 SHF258 (SHF258Q) /CSM/SH/SHF2-C/SHF258Q.Seq.d/ 680 0.0 SHC828 (SHC828Q) /CSM/SH/SHC8-B/SHC828Q.Seq.d/ 680 0.0 SHC669 (SHC669Q) /CSM/SH/SHC6-C/SHC669Q.Seq.d/ 680 0.0 SHC586 (SHC586Q) /CSM/SH/SHC5-D/SHC586Q.Seq.d/ 680 0.0 SHA353 (SHA353Q) /CSM/SH/SHA3-C/SHA353Q.Seq.d/ 680 0.0 CHQ604 (CHQ604Q) /CSM/CH/CHQ6-A/CHQ604Q.Seq.d/ 680 0.0 CHQ547 (CHQ547Q) /CSM/CH/CHQ5-B/CHQ547Q.Seq.d/ 680 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N X99669\|X99669.1 Dictyostelium discoideum mRNA for dynamin homologue. 680 0.0 5 CO370716\|CO370716.1 tah64b03.y1 Hydra EST UCI 5 Hydra magnipapillata cDNA 5' similar to SW:DYN2_MOUSE P39054 DYNAMIN 2 ;, mRNA sequence. 46 7e-06 2 AJ251163\|AJ251163.1 Dictyostelium discoideum dymB gene for dynamin B homologue. 62 1e-05 2 AC116986\|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 34 7e-04 14 AC116957\|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 40 0.001 19 AC115684\|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence. 42 0.001 9 AL396600\|AL396600.1 T3 end of clone AR0AA031D05 of library AR0AA from strain CBS 732 of Zygosaccharomyces rouxii. 56 0.002 1 AL396938\|AL396938.1 T3 end of clone XAR0AA001F10 of library XAR0AA from strain CBS 732 of Zygosaccharomyces rouxii. 56 0.002 1 AC117081\|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence. 42 0.003 14 AC005308\|AC005308.8 Plasmodium falciparum chromosome 12 clone 3D7, * SEQUENCING IN PROGRESS *, 1 ordered pieces. 32 0.017 11
dna update	2004.11.28
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q94464) RecName: Full=Dynamin-A; &X99669_1(X99669\|pid:none) 277 7e-73 BC044291_1(BC044291\|pid:none) Xenopus laevis similar to dynamin ... 117 1e-24 AF061795_1(AF061795\|pid:none) Homo sapiens dynamin-like protein ... 111 6e-23 BC107763_1(BC107763\|pid:none) Homo sapiens dynamin 1-like, mRNA ... 111 6e-23 AK293290_1(AK293290\|pid:none) Homo sapiens cDNA FLJ59840 complet... 111 6e-23 AK298568_1(AK298568\|pid:none) Homo sapiens cDNA FLJ59948 complet... 111 6e-23 BC024590_1(BC024590\|pid:none) Homo sapiens dynamin 1-like, mRNA ... 111 6e-23 BC046374_1(BC046374\|pid:none) Xenopus laevis dynamin 1-like, mRN... 111 6e-23 AB169569_1(AB169569\|pid:none) Macaca fascicularis brain cDNA, cl... 111 6e-23 AF000430_1(AF000430\|pid:none) Homo sapiens dynamin-like protein ... 111 6e-23
protein update	2009. 4. 2
PSORT	psg: 0.70 gvh: 0.43 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 48.0 %: cytoplasmic 20.0 %: nuclear 16.0 %: mitochondrial 12.0 %: cytoskeletal 4.0 %: vacuolar >> prediction for CHI118 is cyt
5' end seq. ID	CHI118F
5' end seq.	>CHI118F.Seq ATAATCCATTAATATTAAATTAATTTCATTTTATTGCATGTAATATAATAATAAATAAAA TAAAATAAAATAAAATAAAATAAAATAAAAATTTAAATAAAAAATAAAAAGAATAAAGAA AAATAAAACTCACAACACACAAATATTAAAAAAAACTATACTTATAAAAAAAAATAAAAA ATAAAAAATAAAAAAATAACCCACACACTCGAACTAATAATAAACAATAAACAAACACAC ACACACATACATACACACACCAATAAACTAAATATATAGTAATAATAATAATAATAAATG GATCAATTAATCCCAGTTATTAATAAACTTCAAGATGTATTTAATACATTAGGATCAGAC CCATTGGATTTACCACAAATCGTTGTTGTTGGTAGTCAATCTTCAGGTAAAAGTAGTGTA CTTGAAAATATAGTAGGTCGTGATTTTTTACCAAGAGGTTCTGGTATTGTAACAAGAAGA CCTTTGATTTTACAATTAACTCATTTACCAATTGCTGATGATGGATCACAAACTCAAGAA TGGGGTGAATTTTTACATAAACCAAATGATATGTTTTATGATTTCTCAGAGATTANNNNN NNNNN
Length of 5' end seq.	605
3' end seq. ID	CHI118Z
3' end seq.	>CHI118Z.Seq NNNNNNNNNNTCAATCCCACAAAATGGTCCAAACAATAATAATAATAATACCAATAATAA TAATAGACAAGATCATCAACAAGGTTCTTTCTTTTCATCTTTTTTCAGAGCTTCACCTGA TCCATCTTTAGGTCAATATGGTGGTGCTAATAATAGTAATAATTCAAATAATCCAACATC ACCAATTAATTCAAGTAGTAATAGCGGTAATAATTATAATACTTTTGGTGGTCAACAATC ATCATCTTCATCATCACAACAATTACAACAATCATCACAATCACAATATAAAACTAGTTA TAATAATAATAATAATAGTAGCAGCAATAATAGTAGTTATAATCGTTATCAAGATGATTT CTATGGTAGAGGTGATAAATTAAATCAAGTACCATCAATTATTAAAGCACCAGATGATTT AACAAGTAAAGAGAAATTTGAAACTGAATTAATTCGTGAACTTTTAATTTCCTATTTTAA TATCGTTAAAAAGAATGTTAAGGATTCAGTTCCAAAATCAATTATGCATTTCTTGGTCAA TCAATCAAAAGAACACATTCAAAATGAATTGGTTGCAGCCCTCTACAAAGAGGAATTGTT TGATGAATTATTAGAGGAATCACCACAAATCTCTAGTAAGAGAAAATCTTGTAAAGCTAT GATCGAAATTTTAAGAAAAGCAAATGAAATTATTAATNAAATTAGAGATTTTAGAAATTA AAATATATTTAAATAAAATTTTATTACATTTATAAA
Length of 3' end seq.	756
Connected seq. ID	CHI118P
Connected seq.	>CHI118P.Seq ATAATCCATTAATATTAAATTAATTTCATTTTATTGCATGTAATATAATAATAAATAAAA TAAAATAAAATAAAATAAAATAAAATAAAAATTTAAATAAAAAATAAAAAGAATAAAGAA AAATAAAACTCACAACACACAAATATTAAAAAAAACTATACTTATAAAAAAAAATAAAAA ATAAAAAATAAAAAAATAACCCACACACTCGAACTAATAATAAACAATAAACAAACACAC ACACACATACATACACACACCAATAAACTAAATATATAGTAATAATAATAATAATAAATG GATCAATTAATCCCAGTTATTAATAAACTTCAAGATGTATTTAATACATTAGGATCAGAC CCATTGGATTTACCACAAATCGTTGTTGTTGGTAGTCAATCTTCAGGTAAAAGTAGTGTA CTTGAAAATATAGTAGGTCGTGATTTTTTACCAAGAGGTTCTGGTATTGTAACAAGAAGA CCTTTGATTTTACAATTAACTCATTTACCAATTGCTGATGATGGATCACAAACTCAAGAA TGGGGTGAATTTTTACATAAACCAAATGATATGTTTTATGATTTCTCAGAGATTA----- -----TCAATCCCACAAAATGGTCCAAACAATAATAATAATAATACCAATAATAATAATA GACAAGATCATCAACAAGGTTCTTTCTTTTCATCTTTTTTCAGAGCTTCACCTGATCCAT CTTTAGGTCAATATGGTGGTGCTAATAATAGTAATAATTCAAATAATCCAACATCACCAA TTAATTCAAGTAGTAATAGCGGTAATAATTATAATACTTTTGGTGGTCAACAATCATCAT CTTCATCATCACAACAATTACAACAATCATCACAATCACAATATAAAACTAGTTATAATA ATAATAATAATAGTAGCAGCAATAATAGTAGTTATAATCGTTATCAAGATGATTTCTATG GTAGAGGTGATAAATTAAATCAAGTACCATCAATTATTAAAGCACCAGATGATTTAACAA GTAAAGAGAAATTTGAAACTGAATTAATTCGTGAACTTTTAATTTCCTATTTTAATATCG TTAAAAAGAATGTTAAGGATTCAGTTCCAAAATCAATTATGCATTTCTTGGTCAATCAAT CAAAAGAACACATTCAAAATGAATTGGTTGCAGCCCTCTACAAAGAGGAATTGTTTGATG AATTATTAGAGGAATCACCACAAATCTCTAGTAAGAGAAAATCTTGTAAAGCTATGATCG AAATTTTAAGAAAAGCAAATGAAATTATTAATNAAATTAGAGATTTTAGAAATTAAAATA TATTTAAATAAAATTTTATTACATTTATAAA
Length of connected seq.	1341
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas