>CHI113 (CHI113Q) /CSM/CH/CHI1-A/CHI113Q.Seq.d/
XXXXXXXXXXTTNAAAAAAAAAAAAAAAAAAAAAATAACCTTTTTTCCTAATGAATCGTT
TAATTAAAGAAAATAATATGGTTNATAAAACCATAAAAAGTTATNTTTGCTTTTCAAATA
ATAATGTAGCCNATAAATCAATACAAAGAACTTATACNNCATATAACTTTAGGACCTATC
CATTTTATCANGAAACCAAAGCTTTTAATGATTTATTAAATCAAAAGAAAATGAAATATC
AAGTTGCATNTTNTTTTAGTAANAANGGTGATGGTTATAAAGGTAAATCCGANTANTACA
GATANAGAATGTATCNCAATAAGAATGAANGGAAGCATCATGATAGTTTTGATAATAAAC
CAATCTTTCCACATATTANTNAACACAATAACCAAATGAAAACTG

---xkkkkkkk*PFFLMNRLIKENNMVXKTIKSYXCFSNNNVAXKSIQRTYTXYNFRTYP
FYXETKAFNDLLNQKKMKYQVAXXFSXXGDGYKGKSXXYRXRMYXNKNEXKHHDSFDNKP
IFPHIXXHNNQMKT

Frame A:
---xkkkkkkk*PFFLMNRLIKENNMVXKTIKSYXCFSNNNVAXKSIQRTYTXYNFRTYP
FYXETKAFNDLLNQKKMKYQVAXXFSXXGDGYKGKSXXYRXRMYXNKNEXKHHDSFDNKP
IFPHIXXHNNQMKT


Frame B:
---xkkkkkknnlfs**iv*lkkiiwxikp*kvxfafqiim*pinqykelixhitlgpih
fixkpkllmiy*ikrk*niklhxxlvxxvmvikvnpxxtdxecixirmxgsimivliinq
sfhilxntitk*kl


Frame C:
---kkkkkkkitffpnesfn*rk*ygx*nhkklxllfk**csx*intknlyxi*l*dlsi
lsxnqsf**fikskeneisscxxf**xx*wl*r*irxxqixnvsq*e*xeas**f***tn
lstyxxtq*pnen

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHI113 (CHI113Q) /CSM/CH/CHI1-A/CHI113Q.Seq.d/                        632   0.0
SSG438 (SSG438Q) /CSM/SS/SSG4-B/SSG438Q.Seq.d/                        617   e-176
VHL754 (VHL754Q) /CSM/VH/VHL7-C/VHL754Q.Seq.d/                        583   e-166
SLA772 (SLA772Q) /CSM/SL/SLA7-C/SLA772Q.Seq.d/                         42   0.006
VFO288 (VFO288Q) /CSM/VF/VFO2-D/VFO288Q.Seq.d/                         36   0.39
SSH509 (SSH509Q) /CSM/SS/SSH5-A/SSH509Q.Seq.d/                         36   0.39
SSH328 (SSH328Q) /CSM/SS/SSH3-B/SSH328Q.Seq.d/                         36   0.39
CHM893 (CHM893Q) /CSM/CH/CHM8-D/CHM893Q.Seq.d/                         36   0.39
VHM423 (VHM423Q) /CSM/VH/VHM4-A/VHM423Q.Seq.d/                         34   1.6
VHK557 (VHK557Q) /CSM/VH/VHK5-C/VHK557Q.Seq.d/                         34   1.6

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115594|AC115594.2 Dictyostelium discoideum chromosome 2 map 4071862-4101005 strain AX4, complete sequence.   599   e-169  2
AE014824|AE014824.1 Plasmodium falciparum 3D7 chromosome 14 section 9 of 13 of the complete sequence.    34   0.016  8
AE017162|AE017162.1 Prochlorococcus marinus subsp. marinus str. CCMP1375 section 2 of 6 of the complete genome.    40   0.018  5
AC091134|AC091134.7 Homo sapiens chromosome 17, clone RP11-646F1, complete sequence.    34   0.019  7
AE014821|AE014821.1 Plasmodium falciparum 3D7 chromosome 14 section 6 of 13 of the complete sequence.    30   0.027  11
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    36   0.028  9
AL049181|AL049181.4 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from  MAL13P4.    36   0.030  9
CR450847|CR450847.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-235J21.    40   0.031  6
AC131055|AC131055.10 Homo sapiens chromosome 17, clone RP11-846F4, complete sequence.    34   0.044  7
AL845366|AL845366.6 Zebrafish DNA sequence from clone CH211-167C22 in linkage group 20.    34   0.063  6

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115594_7(AC115594|pid:none) Dictyostelium discoideum chromosom...   195   4e-49
CP000733_1133(CP000733|pid:none) Coxiella burnetii Dugway 5J108-...    35   0.80
CP001020_904(CP001020|pid:none) Coxiella burnetii CbuK_Q154, com...    35   0.80
AE016828_997(AE016828|pid:none) Coxiella burnetii RSA 493, compl...    35   0.80
CP000940_76(CP000940|pid:none) Clostridium botulinum B1 str. Okr...    33   3.0
CP000963_221(CP000963|pid:none) Clostridium botulinum A3 str. Lo...    33   3.0
DQ437591_59(DQ437591|pid:none) Variola virus strain Sumatra 1970...    33   3.0
AL844504_205(AL844504|pid:none) Plasmodium falciparum 3D7 chromo...    32   6.7

 psg: 0.67  gvh: 0.26  alm: 0.60  top: 0.53  tms: 0.00  mit: 0.42  mip: 0.08
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: mitochondrial
	 32.0 %: nuclear
	 16.0 %: cytoskeletal
	 12.0 %: cytoplasmic
	  4.0 %: endoplasmic reticulum

>> prediction for CHI113 is mit

>CHI113Z.Seq
NNNNNNNNNNTTNAAAAAAAAAAAAAAAAAAAAAATAACCTTTTTTCCTAATGAATCGTT
TAATTAAAGAAAATAATATGGTTNATAAAACCATAAAAAGTTATNTTTGCTTTTCAAATA
ATAATGTAGCCNATAAATCAATACAAAGAACTTATACNNCATATAACTTTAGGACCTATC
CATTTTATCANGAAACCAAAGCTTTTAATGATTTATTAAATCAAAAGAAAATGAAATATC
AAGTTGCATNTTNTTTTAGTAANAANGGTGATGGTTATAAAGGTAAATCCGANTANTACA
GATANAGAATGTATCNCAATAAGAATGAANGGAAGCATCATGATAGTTTTGATAATAAAC
CAATCTTTCCACATATTANTNAACACAATAACCAAATGAAAACTG