CHI111
Library CH
(Link to library)
Clone ID CHI111
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10984-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHI111 (CHI111Q) /CSM/CH/CHI1-A/CHI111Q.Seq.d/
XXXXXXXXXXTAAAACTCAACTTTGTAGAACTTTGGCAGAATTCATGTTTGATAGTCCAA
ATGCTTTGATTCGTATAGATATGTCTGAATACATGGAGAAATTCTCTGTAAGTAGATTAA
TTGGTGCTCCACCAGGTTATGTTGGCTATGAAGAGGGTGGTACATTAACTGAAGCTGTAC
GTAGACGTCCTTACTCTTTGGTTCTATTTGATGAGTTTGAAAAAGCACATAAAGAAGTTA
GCAATTTACTCTTACAAATTTTGGATGATGGTCATATCACAGATAGTCAAGGTAGGAAAA
TAGATTTCAGAAATACAATGGTAATCCTAACAAGTAATTTGGGTGCAGAAATTTTAGCAA
ATTTACCTGATAATACACCTTCAGCAACAGCTAGAGAAGAGGTAATGGGTGTAGTTCGTT
CACGTTTCCCACCAGAATTTTTAAATAGAATCGATGATATGATCCTTTTCAATCGTTTAT
CTCGTAAAGATATGGATAAAATCGTTGAAATTCAATTAGATGATCTCAGAAAATTACTCA
CTGAAAAACATATAGCTCTCAATGTTAAAGAAGATGGTCTCGATTGGTTGGCCGATCAAG
GTTATGATCCAATCTATGGTGCTCGTCCATTAAAACGTGTTATTCACTGNTACTTCAGT
sequence update 2002. 9.10
Translated Amino Acid sequence
---KTQLCRTLAEFMFDSPNALIRIDMSEYMEKFSVSRLIGAPPGYVGYEEGGTLTEAVR
RRPYSLVLFDEFEKAHKEVSNLLLQILDDGHITDSQGRKIDFRNTMVILTSNLGAEILAN
LPDNTPSATAREEVMGVVRSRFPPEFLNRIDDMILFNRLSRKDMDKIVEIQLDDLRKLLT
EKHIALNVKEDGLDWLADQGYDPIYGARPLKRVIHXYFS


Translated Amino Acid sequence (All Frames)
Frame A:
---KTQLCRTLAEFMFDSPNALIRIDMSEYMEKFSVSRLIGAPPGYVGYEEGGTLTEAVR
RRPYSLVLFDEFEKAHKEVSNLLLQILDDGHITDSQGRKIDFRNTMVILTSNLGAEILAN
LPDNTPSATAREEVMGVVRSRFPPEFLNRIDDMILFNRLSRKDMDKIVEIQLDDLRKLLT
EKHIALNVKEDGLDWLADQGYDPIYGARPLKRVIHXYFS


Frame B:
---klnfvelwqnsclivqml*fv*iclntwrnsl*vd*lvlhqvmlamkrvvh*lklyv
dvltlwfylmslkkhikklaiysykfwmmvisqivkvgk*iseiqw*s*qviwvqkf*qi
yliihlqqqlekr*wv*fvhvshqnf*iesmi*sfsivylvkiwikslkfn*misenysl
kni*lsmlkkmvsigwpikvmiqsmvlvh*nvlftxts


Frame C:
---nstl*nfgrihv**skcfdsyryv*ihgeilck*inwcstrlcwl*rgwyin*sct*
tsllfgsi**v*kst*rs*qftltnfg*wsyhr*sr*enrfqkyngnpnk*fgcrnfskf
t**ytfsns*rrgngcssftfptrifk*nr*ydpfqsfis*ryg*nr*nsir*sqkith*
ktyssqc*rrwsrlvgrsrl*snlwcssiktcyslxlq


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHI111 (CHI111Q) /CSM/CH/CHI1-A/CHI111Q.Seq.d/ 1281 0.0
CHR306 (CHR306Q) /CSM/CH/CHR3-A/CHR306Q.Seq.d/ 1243 0.0
CHR165 (CHR165Q) /CSM/CH/CHR1-C/CHR165Q.Seq.d/ 1231 0.0
AHF809 (AHF809Q) /CSM/AH/AHF8-A/AHF809Q.Seq.d/ 1231 0.0
AHO680 (AHO680Q) /CSM/AH/AHO6-D/AHO680Q.Seq.d/ 1219 0.0
AHM171 (AHM171Q) /CSM/AH/AHM1-C/AHM171Q.Seq.d/ 1217 0.0
AHH487 (AHH487Q) /CSM/AH/AHH4-D/AHH487Q.Seq.d/ 1215 0.0
CHF686 (CHF686Q) /CSM/CH/CHF6-D/CHF686Q.Seq.d/ 1211 0.0
CHF391 (CHF391Q) /CSM/CH/CHF3-D/CHF391Q.Seq.d/ 1211 0.0
AHI835 (AHI835Q) /CSM/AH/AHI8-B/AHI835Q.Seq.d/ 1211 0.0

own update 2003.10. 2
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AE017263|AE017263.1 Mesoplasma florum L1 complete genome. 78 2e-19 3
AW400064|AW400064.1 707061D01.x1 707 - Mixed adult tissues from Walbot lab (SK) Zea mays cDNA, mRNA sequence. 82 1e-11 1
BX842644|BX842644.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 3/4. 78 2e-11 2
AG268751|AG268751.1 Cyanidioschyzon merolae genomic DNA, reverse end of BAC clone:H1G09. 52 4e-11 3
BF728490|BF728490.1 1000063B06.x1 1000 - Unigene I from Maize Genome Project Zea mays cDNA, mRNA sequence. 80 5e-11 1
CA240369|CA240369.1 SCSBFL4067B03.g FL4 Saccharum officinarum cDNA clone SCSBFL4067B03 5', mRNA sequence. 80 5e-11 1
AG271488|AG271488.1 Cyanidioschyzon merolae genomic DNA, forward end of BAC clone:M4L06. 52 6e-11 3
AG268259|AG268259.1 Cyanidioschyzon merolae genomic DNA, forward end of BAC clone:H5A13. 52 6e-11 3
AE017329|AE017329.1 Listeria monocytogenes str. 4b F2365, section 8 of 10 of the complete genome. 54 6e-11 2
AG267129|AG267129.1 Cyanidioschyzon merolae genomic DNA, forward end of BAC clone:H1I23. 52 7e-11 3
dna update 2004.11.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000009_1413(CP000009|pid:none) Gluconobacter oxydans 621H, com... 293 3e-78
CP001001_5364(CP001001|pid:none) Methylobacterium radiotolerans ... 293 3e-78
CP000133_3698(CP000133|pid:none) Rhizobium etli CFN 42, complete... 288 7e-77
(Q98G96) RecName: Full=Chaperone protein clpB; &BA000012_2639(B... 288 7e-77
CP000911_1613(CP000911|pid:none) Brucella suis ATCC 23445 chromo... 287 2e-76
(Q7CEG6) RecName: Full=Chaperone protein clpB; &AE014291_1807(A... 287 2e-76
CP001074_3964(CP001074|pid:none) Rhizobium etli CIAT 652, comple... 287 2e-76
CP001191_3485(CP001191|pid:none) Rhizobium leguminosarum bv. tri... 286 3e-76
AP007255_1560(AP007255|pid:none) Magnetospirillum magneticum AMB... 286 3e-76
CP000872_1791(CP000872|pid:none) Brucella canis ATCC 23365 chrom... 286 3e-76
protein update 2009. 5.19
PSORT

psg: 0.74 gvh: 0.28 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.29 mip: 0.09
nuc: 0.03 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
32.0 %: nuclear
16.0 %: mitochondrial
8.0 %: plasma membrane
4.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for CHI111 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHI111Z
3' end seq.
>CHI111Z.Seq
NNNNNNNNNNTAAAACTCAACTTTGTAGAACTTTGGCAGAATTCATGTTTGATAGTCCAA
ATGCTTTGATTCGTATAGATATGTCTGAATACATGGAGAAATTCTCTGTAAGTAGATTAA
TTGGTGCTCCACCAGGTTATGTTGGCTATGAAGAGGGTGGTACATTAACTGAAGCTGTAC
GTAGACGTCCTTACTCTTTGGTTCTATTTGATGAGTTTGAAAAAGCACATAAAGAAGTTA
GCAATTTACTCTTACAAATTTTGGATGATGGTCATATCACAGATAGTCAAGGTAGGAAAA
TAGATTTCAGAAATACAATGGTAATCCTAACAAGTAATTTGGGTGCAGAAATTTTAGCAA
ATTTACCTGATAATACACCTTCAGCAACAGCTAGAGAAGAGGTAATGGGTGTAGTTCGTT
CACGTTTCCCACCAGAATTTTTAAATAGAATCGATGATATGATCCTTTTCAATCGTTTAT
CTCGTAAAGATATGGATAAAATCGTTGAAATTCAATTAGATGATCTCAGAAAATTACTCA
CTGAAAAACATATAGCTCTCAATGTTAAAGAAGATGGTCTCGATTGGTTGGCCGATCAAG
GTTATGATCCAATCTATGGTGCTCGTCCATTAAAACGTGTTATTCACTGNTACTTCAGT
Length of 3' end seq. 659
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -