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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHH885
Library CH
(Link to library)
Clone ID CHH885
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16264-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHH885 (CHH885Q) /CSM/CH/CHH8-D/CHH885Q.Seq.d/
XXXXXXXXXXATAGAGGTTTAGCAAATATTTTAGTCGATGGTAGAGGTGCTCGTGTTGGT
GTTGAGGTTAGAATCTTGAAAGATGGACTTCAAAGAAAAACTCAAATCTTGGATTCCTAT
TGTATTTTGGATAATCTTTCAATTCATCTCTAGGATTGTAAACATACTTTCCTCTATAAA
ATCTTTAC
sequence update 2002. 9.10
Translated Amino Acid sequence 
---RGLANILVDGRGARVGVEVRILKDGLQRKTQILDSYCILDNLSIHL*dckhtflyki
f
Translated Amino Acid sequence (All Frames) 
Frame A:
---*rfskyfsrw*rcscwc*g*nlerwtskknsnlgfllyfg*sfnsslgl*tyfpl*n
ly


Frame B:
---RGLANILVDGRGARVGVEVRILKDGLQRKTQILDSYCILDNLSIHL*dckhtflyki
f


Frame C:
---ev*qif*smvevlvlvlrles*kmdfkeklkswipivfwiifqfisrivnilssiks
l
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHH885 (CHH885Q) /CSM/CH/CHH8-D/CHH885Q.Seq.d/                        353   6e-97
CHR874 (CHR874Q) /CSM/CH/CHR8-D/CHR874Q.Seq.d/                        345   1e-94
SHG668 (SHG668Q) /CSM/SH/SHG6-C/SHG668Q.Seq.d/                        345   1e-94
SHD540 (SHD540Q) /CSM/SH/SHD5-B/SHD540Q.Seq.d/                        345   1e-94
SHC227 (SHC227Q) /CSM/SH/SHC2-B/SHC227Q.Seq.d/                        345   1e-94
CHR874 (CHR874Q) /CSM/CH/CHR8-D/CHR874Q.Seq.d/                        345   1e-94
CHR791 (CHR791Q) /CSM/CH/CHR7-D/CHR791Q.Seq.d/                        345   1e-94
CHR620 (CHR620Q) /CSM/CH/CHR6-A/CHR620Q.Seq.d/                        345   1e-94
CHR605 (CHR605Q) /CSM/CH/CHR6-A/CHR605Q.Seq.d/                        345   1e-94
CHR486 (CHR486Q) /CSM/CH/CHR4-D/CHR486Q.Seq.d/                        345   1e-94
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC149477|AC149477.2 Zea mays clone ZMMBBb0493A01, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.    42   0.062  2
AG562546|AG562546.1 Mus musculus molossinus DNA, clone:MSMg01-482F19.TJ, genomic survey sequence.    46   0.19   1
BG845279|BG845279.1 1024009F01.y1 C. reinhardtii CC-1690, normalized, Lambda Zap II Chlamydomonas reinhardtii cDNA, mRNA sequence.    44   0.76   1
AX344565|AX344565.1 Sequence 16 from Patent WO0200932.             36   0.92   8
BI922266|BI922266.1 EST542169 tomato callus Lycopersicon esculentum cDNA clone cLEC77E13 5' end, mRNA sequence.    40   1.3    2
AY037930|AY037930.1 Bacillus cereus spore germination receptor operon, complete sequence.    34   1.8    2
BX538350|BX538350.1 Cryptosporidium parvum chromosome 6, complete sequence; segment 1/4.    32   2.7    8
AC146763|AC146763.2 Zea mays clone ZMMBBc0060A01, WORKING DRAFT SEQUENCE, 3 unordered pieces.    42   3.0    1
AC148099|AC148099.5 Zea mays clone ZMMBBb0357K20, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    42   3.0    1
CG411425|CG411425.1 ZMMBBb0265O01.f ZMMBBb Zea mays subsp. mays genomic clone ZMMBBb0265O01 5', genomic survey sequence.    42   3.0    1
dna update 2004.11.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FJ562095_1(FJ562095|pid:none) Crimean-Congo hemorrhagic fever vi...    33   3.0
AY947890_1(AY947890|pid:none) Crimean-Congo hemorrhagic fever vi...    32   5.1
AY675240_1(AY675240|pid:none) Crimean-Congo hemorrhagic fever vi...    32   6.7
DQ211623_1(DQ211623|pid:none) Crimean-Congo hemorrhagic fever vi...    32   6.7
DQ211617_1(DQ211617|pid:none) Crimean-Congo hemorrhagic fever vi...    32   6.7
DQ211618_1(DQ211618|pid:none) Crimean-Congo hemorrhagic fever vi...    32   6.7
protein update 2009. 5.19
PSORT 

 psg: 0.66  gvh: 0.34  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for CHH885 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHH885Z
3' end seq. 
>CHH885Z.Seq
NNNNNNNNNNATAGAGGTTTAGCAAATATTTTAGTCGATGGTAGAGGTGCTCGTGTTGGT
GTTGAGGTTAGAATCTTGAAAGATGGACTTCAAAGAAAAACTCAAATCTTGGATTCCTAT
TGTATTTTGGATAATCTTTCAATTCATCTCTAGGATTGTAAACATACTTTCCTCTATAAA
ATCTTTAC
Length of 3' end seq. 188
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -