>CHH854 (CHH854Q) /CSM/CH/CHH8-C/CHH854Q.Seq.d/
XXXXXXXXXXATATCGTGTTGGTAGAGTTTGGCTTGATATAAATGGTAATGGTATTCAAG
ATGCTGGTGAACNTGGTATTTCAGGAATCACAGTATTCTTAATCTATGGTCAACAATCAA
CTCCAACAAGTCAAACTGTATCCGATTCAAATGGTTATTTCANATTTGAAGTTGATTTCA
GTTCAAATTATTANTGTGTAATTCCTGNTGCANTCTTCCAAGCTGGTTNTTCCATTACAA
TGAGAAATGCATGATCCAA

---YRVGRVWLDINGNGIQDAGEXGISGITVFLIYGQQSTPTSQTVSDSNGYFXFEVDFS
SNYXCVIPXAXFQAGXSITMRNA*s

Frame A:
---YRVGRVWLDINGNGIQDAGEXGISGITVFLIYGQQSTPTSQTVSDSNGYFXFEVDFS
SNYXCVIPXAXFQAGXSITMRNA*s


Frame B:
---ivlvefgli*mvmvfkmlvnxvfqesqys*smvnnqlqqvklypiqmvisxlklisv
qiixv*flxxssklvxplq*emhdp


Frame C:
---scw*sla*ykw*wysrcw*twyfrnhsilnlwstinsnksncirfkwlfxi*s*fqf
kllxcnsxcxlpswxfhynekcmiq

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHH854 (CHH854Q) /CSM/CH/CHH8-C/CHH854Q.Seq.d/                        458   e-128
SHK893 (SHK893Q) /CSM/SH/SHK8-D/SHK893Q.Seq.d/                        450   e-126
SHJ874 (SHJ874Q) /CSM/SH/SHJ8-D/SHJ874Q.Seq.d/                        442   e-123
SSK275 (SSK275Q) /CSM/SS/SSK2-D/SSK275Q.Seq.d/                        442   e-123
SSI677 (SSI677Q) /CSM/SS/SSI6-D/SSI677Q.Seq.d/                        442   e-123
SSG727 (SSG727Q) /CSM/SS/SSG7-B/SSG727Q.Seq.d/                        442   e-123
SSF888 (SSF888Q) /CSM/SS/SSF8-D/SSF888Q.Seq.d/                        442   e-123
SSF392 (SSF392Q) /CSM/SS/SSF3-D/SSF392Q.Seq.d/                        442   e-123
SSF149 (SSF149Q) /CSM/SS/SSF1-C/SSF149Q.Seq.d/                        442   e-123
SSE643 (SSE643Q) /CSM/SS/SSE6-B/SSE643Q.Seq.d/                        442   e-123

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CV038130|CV038130.1 4135196 BARC_3GAL chicken mixed tissue Gallus gallus cDNA clone 3GAL_23C04 5', mRNA sequence.    44   1.1    1
BX082874|BX082874.2 Rainbow trout multi-tissues normalized library (tcac) clone  tcac0005c.d.21, 5prim end (T7 primer).    42   4.3    1
BQ022375|BQ022375.1 UI-1-BB1p-akh-h-10-0-UI.s1 NCI_CGAP_Pl6 Homo sapiens cDNA clone UI-1-BB1p-akh-h-10-0-UI 3', mRNA sequence.    42   4.3    1
CR847904|CR847904.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-1E17.    30   7.3    2
AC150654|AC150654.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0094L06, complete sequence.    30   7.3    2
CR626881|CR626881.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-77G19.    30   7.3    2
AC114012|AC114012.5 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0079H11, complete sequence.    30   7.5    2
AC096483|AC096483.4 Rattus norvegicus clone CH230-85K10, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces.    40   17     1
AP001689|AP001689.1 Homo sapiens genomic DNA, chromosome 21q, section 33/105.    40   17     1
BA000031|BA000031.2 Vibrio parahaemolyticus DNA, chromosome 1, complete sequence.    40   17     1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000909_404(CP000909|pid:none) Chloroflexus aurantiacus J-10-fl...    55   1e-06
CP001337_3037(CP001337|pid:none) Chloroflexus aggregans DSM 9485...    55   1e-06
CP000686_1034(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    50   2e-05
AM913013_1(AM913013|pid:none) Uncultured bacterium partial integ...    45   6e-04
CP000830_3576(CP000830|pid:none) Dinoroseobacter shibae DFL 12, ...    45   6e-04
CP001337_286(CP001337|pid:none) Chloroflexus aggregans DSM 9485,...    45   8e-04
AY458641_15(AY458641|pid:none) Uncultured marine bacterium 463 c...    45   8e-04
CP000686_4190(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    45   8e-04
CP000909_3116(CP000909|pid:none) Chloroflexus aurantiacus J-10-f...    45   0.001
CP000910_1528(CP000910|pid:none) Renibacterium salmoninarum ATCC...    44   0.001

 psg: 0.60  gvh: 0.48  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for CHH854 is cyt

>CHH854Z.Seq
NNNNNNNNNNATATCGTGTTGGTAGAGTTTGGCTTGATATAAATGGTAATGGTATTCAAG
ATGCTGGTGAACNTGGTATTTCAGGAATCACAGTATTCTTAATCTATGGTCAACAATCAA
CTCCAACAAGTCAAACTGTATCCGATTCAAATGGTTATTTCANATTTGAAGTTGATTTCA
GTTCAAATTATTANTGTGTAATTCCTGNTGCANTCTTCCAAGCTGGTTNTTCCATTACAA
TGAGAAATGCATGATCCAA