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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHH787
Library CH
(Link to library)
Clone ID CHH787
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHH787 (CHH787Q) /CSM/CH/CHH7-D/CHH787Q.Seq.d/
XXXXXXXXXXGGTAGTTTAATCATTGGTACTTTGGATGGTGCAAATGTTGAAATCGCCGA
AGAAGTTGGTCAAGAGAATATGTTTATCTTTGGTTTACGTACAAGTGAAGTTGAAGCTGA
TCGTGAAAAAATGACAAACAAAGAAGTCAACATTGACCCACGTNTTCAAGAGGTATTCNT
TAATATTGAATTAGGTACATTTGGTCCACCAGATGTTTTCAGACCAATCTTGGANTCTTT
AATCTTTAGTGATTTCTACTTAAGCATTCAAGATTTCCCACTCTACCTTGANTCTCAAGC
TTCAGTTGATGA
sequence update 2002. 9.10
Translated Amino Acid sequence 
---SLIIGTLDGANVEIAEEVGQENMFIFGLRTSEVEADREKMTNKEVNIDPRXQEVFXN
IELGTFGPPDVFRPILXSLIFSDFYLSIQDFPLYLXSQASVD
Translated Amino Acid sequence (All Frames) 
Frame A:
---vv*slvlwmvqmlkspkklvkriclslvyvqvklklivkk*qtkkstlthvfkrysl
iln*vhlvhqmfsdqswxl*slvist*afkishstlxlklqlm


Frame B:
---*fnhwyfgwckc*nrrrswsreyvylwftyk*s*s*s*kndkqrsqh*ptxsrgix*
y*iryiwstrcfqtnlgxfnl**fllkhsrfptlp*xssfs**


Frame C:
---SLIIGTLDGANVEIAEEVGQENMFIFGLRTSEVEADREKMTNKEVNIDPRXQEVFXN
IELGTFGPPDVFRPILXSLIFSDFYLSIQDFPLYLXSQASVD
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHJ355 (CHJ355Q) /CSM/CH/CHJ3-C/CHJ355Q.Seq.d/                        575   e-163
CHH787 (CHH787Q) /CSM/CH/CHH7-D/CHH787Q.Seq.d/                        575   e-163
SHF274 (SHF274Q) /CSM/SH/SHF2-D/SHF274Q.Seq.d/                        569   e-162
VHM611 (VHM611Q) /CSM/VH/VHM6-A/VHM611Q.Seq.d/                        567   e-161
VHL868 (VHL868Q) /CSM/VH/VHL8-C/VHL868Q.Seq.d/                        567   e-161
VHJ473 (VHJ473Q) /CSM/VH/VHJ4-D/VHJ473Q.Seq.d/                        567   e-161
VHG805 (VHG805Q) /CSM/VH/VHG8-A/VHG805Q.Seq.d/                        567   e-161
VHG443 (VHG443Q) /CSM/VH/VHG4-B/VHG443Q.Seq.d/                        567   e-161
VHE279 (VHE279Q) /CSM/VH/VHE2-D/VHE279Q.Seq.d/                        567   e-161
VFG463 (VFG463Q) /CSM/VF/VFG4-C/VFG463Q.Seq.d/                        567   e-161
own update 2005. 1. 1
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X62142|X62142.1 D. discoideum glpV gene for glycogen phosphorylase 1.   567   e-158  1
AF542095|AF542095.1 Entamoeba histolytica glycogen phosphorylase-2 mRNA, partial cds.    70   2e-08  1
AZ550934|AZ550934.1 ENTEY06TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    68   9e-08  1
AY050311|AY050311.1 Entamoeba histolytica glycogen phosphorylase mRNA, complete cds.    68   9e-08  1
AZ693437|AZ693437.1 ENTKO14TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    68   9e-08  1
BH149199|BH149199.1 ENTQG01TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    68   9e-08  1
AZ668559|AZ668559.1 ENTLD89TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    64   1e-06  1
AZ674540|AZ674540.1 ENTHI71TFB Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    54   0.001  1
AZ677119|AZ677119.1 ENTHI71TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    54   0.001  1
M77492|M77492.1 Dictyostelium discoideum glycoprotein phosphorylase 2 (glpD) gene, complete cds.    54   0.001  1
dna update 2004.11.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X62142_1(X62142|pid:none) D. discoideum glpV gene for glycogen p...   186   2e-46
(Q00766) RecName: Full=Glycogen phosphorylase 1;          Short=...   186   2e-46
EU165056_1(EU165056|pid:none) Cyanophora paradoxa starch phospho...    90   3e-17
DQ279077_1(DQ279077|pid:none) Chlamydomonas reinhardtii PhoB (PH...    87   2e-16
DQ279079_1(DQ279079|pid:none) Chlamydomonas reinhardtii PhoA (PH...    86   4e-16
AP006852_90(AP006852|pid:none) Candida albicans genomic DNA, chr...    86   5e-16
CR954211_102(CR954211|pid:none) Ostreococcus tauri strain OTTH05...    84   1e-15
CR382138_967(CR382138|pid:none) Debaryomyces hansenii strain CBS...    84   1e-15
CR382132_179(CR382132|pid:none) Yarrowia lipolytica strain CLIB1...    83   3e-15
AK103367_1(AK103367|pid:none) Oryza sativa Japonica Group cDNA c...    82   4e-15
protein update 2009. 5.19
PSORT 

 psg: 0.75  gvh: 0.48  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for CHH787 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHH787Z
3' end seq. 
>CHH787Z.Seq
NNNNNNNNNNGGTAGTTTAATCATTGGTACTTTGGATGGTGCAAATGTTGAAATCGCCGA
AGAAGTTGGTCAAGAGAATATGTTTATCTTTGGTTTACGTACAAGTGAAGTTGAAGCTGA
TCGTGAAAAAATGACAAACAAAGAAGTCAACATTGACCCACGTNTTCAAGAGGTATTCNT
TAATATTGAATTAGGTACATTTGGTCCACCAGATGTTTTCAGACCAATCTTGGANTCTTT
AATCTTTAGTGATTTCTACTTAAGCATTCAAGATTTCCCACTCTACCTTGANTCTCAAGC
TTCAGTTGATGA
Length of 3' end seq. 312
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -