>CHH602 (CHH602Q) /CSM/CH/CHH6-A/CHH602Q.Seq.d/
XXXXXXXXXXAATTTCNATAAAATNTAATATTAGTAATATTACATGTGATGGATTTGATT
AGGAATGTGAAATTCAGGGAAATAGTACCCNTTTTACAGTTGATTATACAGCGGTTTATC
ATGTAAATTCAAATCCNATTTCNAAATATTATAATAGAAAGGTATGTATTAAATCAGTAC
CATATGGNACTTACTTATCAAATAATAATGGTGTGATTGAAATGAGTGAAAAGCTACGTA
AATATGAGGAATGGTTCATTGAAAGAGCTGCAACTGGTCCAAATTCATTGGATACTGATA
TCTATATTTTCAGGTAAAACATTCNACAAATATTTAACCTTTAATCCATCAACGAATCAA
TTATTTCATGGTTCNATTTGTGAAAATAGTATATGGCGTTTAGAAGGTAACNCTCAATTA
AATCATGAAAAATTCNC

---isikxnisnitcdgfd*ECEIQGNSTXFTVDYTAVYHVNSNPISKYYNRKVCIKSVP
YGTYLSNNNGVIEMSEKLRKYEEWFIERAATGPNSLDTDIYIFR*nixqifnl*sinesi
iswfxl*k*ymafrr*xsiks*kix

Frame A:
---isikxnisnitcdgfd*ECEIQGNSTXFTVDYTAVYHVNSNPISKYYNRKVCIKSVP
YGTYLSNNNGVIEMSEKLRKYEEWFIERAATGPNSLDTDIYIFR*nixqifnl*sinesi
iswfxl*k*ymafrr*xsiks*kix


Frame B:
---fx*nxilvilhvmdlirnvkfreivpxlqliiqrfim*iqixfxniiieryvlnqyh
mxltyqiimv*lk*vksyvnmrngslkelqlvqihwilisifsgktfxkyltfnpstnql
fhgsicensiwrlegnxqlnhekf


Frame C:
---fxkx*y**yym*wi*lgm*nsgk*ypfys*lysglsckfksxfxil**kgmy*isti
wxllik**wcd*ne*kat*i*gmvh*kscnwskfigy*ylyfqvkhstni*plihqriny
fmvxfvkivygv*kvtln*imkns

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHH602 (CHH602Q) /CSM/CH/CHH6-A/CHH602Q.Seq.d/                        789   0.0
VSH482 (VSH482Q) /CSM/VS/VSH4-D/VSH482Q.Seq.d/                         38   0.11
VFJ226 (VFJ226Q) /CSM/VF/VFJ2-B/VFJ226Q.Seq.d/                         38   0.11
VFF836 (VFF836Q) /CSM/VF/VFF8-B/VFF836Q.Seq.d/                         38   0.11
CFC524 (CFC524Q) /CSM/CF/CFC5-A/CFC524Q.Seq.d/                         38   0.11
SSG230 (SSG230Q) /CSM/SS/SSG2-B/SSG230Q.Seq.d/                         36   0.43
VHH643 (VHH643Q) /CSM/VH/VHH6-B/VHH643Q.Seq.d/                         34   1.7
SSJ857 (SSJ857Q) /CSM/SS/SSJ8-C/SSJ857Q.Seq.d/                         34   1.7
SHK602 (SHK602Q) /CSM/SH/SHK6-A/SHK602Q.Seq.d/                         34   1.7
SHH221 (SHH221Q) /CSM/SH/SHH2-A/SHH221Q.Seq.d/                         34   1.7

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BH176664|BH176664.1 007_E_10-rev SmBAC1 Schistosoma mansoni genomic clone 007E10 5', genomic survey sequence.    38   0.044  2
AL613623|AL613623.1 T3 end of clone 007BC05 of library SmBAC1 from strain Puerto-Rican  of Schistosoma mansoni.    38   0.044  2
BX470136|BX470136.8 Zebrafish DNA sequence from clone CH211-113J6 in linkage group 1.    48   0.12   1
CR759780|CR759780.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-269P14.    48   0.12   1
AL713869|AL713869.6 Zebrafish DNA sequence from clone BUSM1-75P05 in linkage group 1  Contains a novel gene similar to GCP3 (spindle pole body protein), a novel gene and a CpG island.    48   0.12   1
AC011059|AC011059.8 Homo sapiens chromosome 18, clone RP11-11F23, complete sequence.    42   0.20   3
BX649467|BX649467.5 Zebrafish DNA sequence from clone CH211-117L16 in linkage group 4  Contains the gene for a novel protein similar to vertebrate  mitochondrial ribosomal protein S18A (MRPS18A) and two novel genes.    46   0.48   1
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    32   1.8    11
AZ926662|AZ926662.1 476.dis10a12.s1 Saccharomyces castellii NRRL Y-12630 Saccharomyces castellii genomic clone 476.dis10a12.s1, DNA sequence.    44   1.9    1
AF422188|AF422188.1 Acanthopagrus latus clone AL54 repeat region.    44   1.9    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU176871_1(EU176871|pid:none) Pratylenchus coffeae GHF5 endogluc...    33   2.3
AJ965638_1(AJ965638|pid:none) Nyctotherus ovalis partial mRNA fo...    33   3.0
AJ965632_1(AJ965632|pid:none) Nyctotherus ovalis partial mRNA fo...    33   3.0
(Q12433) RecName: Full=Protein AHC1; AltName: Full=ADA HAT compl...    33   3.0
CP000029_1618(CP000029|pid:none) Staphylococcus epidermidis RP62...    32   5.1
AC116979_21(AC116979|pid:none) Dictyostelium discoideum chromoso...    32   8.6

 psg: 0.75  gvh: 0.38  alm: 0.59  top: 0.53  tms: 0.00  mit: 0.08  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 24.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for CHH602 is nuc

>CHH602Z.Seq
NNNNNNNNNNAATTTCNATAAAATNTAATATTAGTAATATTACATGTGATGGATTTGATT
AGGAATGTGAAATTCAGGGAAATAGTACCCNTTTTACAGTTGATTATACAGCGGTTTATC
ATGTAAATTCAAATCCNATTTCNAAATATTATAATAGAAAGGTATGTATTAAATCAGTAC
CATATGGNACTTACTTATCAAATAATAATGGTGTGATTGAAATGAGTGAAAAGCTACGTA
AATATGAGGAATGGTTCATTGAAAGAGCTGCAACTGGTCCAAATTCATTGGATACTGATA
TCTATATTTTCAGGTAAAACATTCNACAAATATTTAACCTTTAATCCATCAACGAATCAA
TTATTTCATGGTTCNATTTGTGAAAATAGTATATGGCGTTTAGAAGGTAACNCTCAATTA
AATCATGAAAAATTCNC