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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFG142
Library AF
(Link to library)
Clone ID AFG142
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16408-1
Original site URL
Representative seq. ID AFG142P
(Link to Original site)
Representative DNA sequence 
>AFG142 (AFG142Q) /CSM/AF/AFG1-B/AFG142Q.Seq.d/
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAAXXXXXXXXX
XGGTGATACATTGGCTCATACATTCGCTGGTACAGATTCAGTCGGTGTAACTGGTTTCCA
TATAATTACAAAGACTTTTAATTTGATTGCTGGTGGTAAATTTAACTCTGATCAACAATA
CATTGATAAATCCTACGGTTCAATTCCATCACAAGATAATGAAGAAATTAAAAAGAGATT
ACAAAGTGCTCATCAACAATTACAAGAACAATCACCTGCAATCTATCAATCAATGAAATC
TGAAGATCTAAAAAATTTAGATGATGAAGTAATTCGTAATACTCTTAAGGAAATGCAAAT
TCAACGTGAAAATCAAGATATTGGTCAACAAAATCAAGAAGATAAAGAACAATTAATTGA
TTTACAAAATAGAGAACCTGGTTTATACAAAAATCAACAAGATCTTAAACAAGAGAAAAG
AGCCAATCAACAAGAATTAATCAATTATGAATTGAATTTACAAGAAGATCAAGAACAATA
TGAACTTTTATTAGATCAACTCTATGATGAACAACAACAACAACCACAAAAAGTTTCAAA
TAAACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGNNCAACA
AATCCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATCAGCAATTATTAGACCAAGA
ACAAAATCA
sequence update 2001. 6. 2
Translated Amino Acid sequence 
iinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---GDTLAHTFAGTDSVGVTGFHIITKTFNLIAGGKFNSDQQYIDKSYGSIPSQDNEEIK
KRLQSAHQQLQEQSPAIYQSMKSEDLKNLDDEVIRNTLKEMQIQRENQDIGQQNQEDKEQ
LIDLQNREPGLYKNQQDLKQEKRANQQELINYELNLQEDQEQYELLLDQLYDEQQQQPQK
VSNKQQSPDQIKNQLKNIQHXQQIQEQQDKLNQEKNQQLLDQEQN
Translated Amino Acid sequence (All Frames) 
Frame A:
k**iyyqitifsflsf*slnnrnnkn*y*kkgtlkkk---

---GDTLAHTFAGTDSVGVTGFHIITKTFNLIAGGKFNSDQQYIDKSYGSIPSQDNEEIK
KRLQSAHQQLQEQSPAIYQSMKSEDLKNLDDEVIRNTLKEMQIQRENQDIGQQNQEDKEQ
LIDLQNREPGLYKNQQDLKQEKRANQQELINYELNLQEDQEQYELLLDQLYDEQQQQPQK
VSNKQQSPDQIKNQLKNIQHXQQIQEQQDKLNQEKNQQLLDQEQN

Frame B:
nnkftik*lfflfflfkv*iieiikinikkker*kk---

---vihwlihslvqiqsv*lvsi*lqrlli*llvvnltlinntlinptvqfhhkimkklk
rdykvlinnyknnhlqsinq*nlki*ki*mmk*fvillrkckfnvkikilvnkikkiknn
*liykienlvytkinkilnkrkepinkn*simn*iykkiknnmnfy*insmmnnnnnhkk
fqinnnlltklkin*kifnmxnksknnkin*ikkkisny*tknki

Frame C:
iinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---*yigsyirwyrfsrcnwfpynykdf*fdcww*i*l*stih**ilrfnsitr**rn*k
eitkcsstitrtitcnlsinei*rskkfr**sns*ys*gnanst*ksrywstksrr*rti
n*ftk*rtwfiqkstrs*treksqstrinql*ieftrrsrti*tfirstl**ttttttks
fk*ttis*pn*ksikkystxxtnprttr*iksrkksaiirprtks
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFK701 (SFK701Q) /CSM/SF/SFK7-A/SFK701Q.Seq.d/                       1007   0.0
SFJ324 (SFJ324Q) /CSM/SF/SFJ3-A/SFJ324Q.Seq.d/                       1007   0.0
CHD226 (CHD226Q) /CSM/CH/CHD2-B/CHD226Q.Seq.d/                       1007   0.0
CHC215 (CHC215Q) /CSM/CH/CHC2-A/CHC215Q.Seq.d/                       1007   0.0
CFH714 (CFH714Q) /CSM/CF/CFH7-A/CFH714Q.Seq.d/                       1007   0.0
CFG751 (CFG751Q) /CSM/CF/CFG7-C/CFG751Q.Seq.d/                       1007   0.0
CFF619 (CFF619Q) /CSM/CF/CFF6-A/CFF619Q.Seq.d/                       1007   0.0
AFN735 (AFN735Q) /CSM/AF/AFN7-B/AFN735Q.Seq.d/                       1007   0.0
AFK694 (AFK694Q) /CSM/AF/AFK6-D/AFK694Q.Seq.d/                       1007   0.0
AFG142 (AFG142Q) /CSM/AF/AFG1-B/AFG142Q.Seq.d/                       1007   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.  1007   0.0    5
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   5e-09  19
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    34   7e-08  21
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    36   5e-07  15
AP006628|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome.    34   9e-07  19
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    38   2e-05  13
BX842642|BX842642.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 1/4.    34   4e-05  17
BX842644|BX842644.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 3/4.    36   4e-05  17
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34   6e-05  17
AB063521|AB063521.2 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome, section 1/2.    36   1e-04  15
dna update 2004. 6.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   293   3e-78
CR940347_653(CR940347|pid:none) Theileria annulata strain Ankara...    50   1e-04
(Q54VY3) RecName: Full=Putative uncharacterized protein DDB_G028...    47   5e-04
AF305694_1(AF305694|pid:none) Kaposi's sarcoma-associated herpes...    47   9e-04
BT036468_1(BT036468|pid:none) Zea mays full-length cDNA clone ZM...    46   0.001
AF192756_1(AF192756|pid:none) Kaposi's sarcoma-associated herpes...    45   0.002
AF360120_1(AF360120|pid:none) Human herpesvirus 8 ORF73 gene, co...    45   0.002
AF148805_82(AF148805|pid:none) Human herpesvirus 8 type P isolat...    45   0.002
BC149000_1(BC149000|pid:none) Bos taurus involucrin, mRNA (cDNA ...    45   0.002
U93872_83(U93872|pid:none) Kaposi's sarcoma-associated herpesvir...    45   0.003
protein update 2009. 4.20
PSORT 

 psg: 0.62  gvh: 0.40  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum

>> prediction for AFG142 is cyt
5' end seq. ID AFG142F
5' end seq. 
>AFG142F.Seq
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAA---------
-
Length of 5' end seq. 111
3' end seq. ID AFG142Z
3' end seq. 
>AFG142Z.Seq
----------GGTGATACATTGGCTCATACATTCGCTGGTACAGATTCAGTCGGTGTAAC
TGGTTTCCATATAATTACAAAGACTTTTAATTTGATTGCTGGTGGTAAATTTAACTCTGA
TCAACAATACATTGATAAATCCTACGGTTCAATTCCATCACAAGATAATGAAGAAATTAA
AAAGAGATTACAAAGTGCTCATCAACAATTACAAGAACAATCACCTGCAATCTATCAATC
AATGAAATCTGAAGATCTAAAAAATTTAGATGATGAAGTAATTCGTAATACTCTTAAGGA
AATGCAAATTCAACGTGAAAATCAAGATATTGGTCAACAAAATCAAGAAGATAAAGAACA
ATTAATTGATTTACAAAATAGAGAACCTGGTTTATACAAAAATCAACAAGATCTTAAACA
AGAGAAAAGAGCCAATCAACAAGAATTAATCAATTATGAATTGAATTTACAAGAAGATCA
AGAACAATATGAACTTTTATTAGATCAACTCTATGATGAACAACAACAACAACCACAAAA
AGTTTCAAATAAACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACA
TGNNCAACAAATCCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATCAGCAATTATT
AGACCAAGAACAAAATCA
Length of 3' end seq. 668
Connected seq. ID AFG142P
Connected seq. 
>AFG142P.Seq
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAA---------
-GGTGATACATTGGCTCATACATTCGCTGGTACAGATTCAGTCGGTGTAACTGGTTTCCA
TATAATTACAAAGACTTTTAATTTGATTGCTGGTGGTAAATTTAACTCTGATCAACAATA
CATTGATAAATCCTACGGTTCAATTCCATCACAAGATAATGAAGAAATTAAAAAGAGATT
ACAAAGTGCTCATCAACAATTACAAGAACAATCACCTGCAATCTATCAATCAATGAAATC
TGAAGATCTAAAAAATTTAGATGATGAAGTAATTCGTAATACTCTTAAGGAAATGCAAAT
TCAACGTGAAAATCAAGATATTGGTCAACAAAATCAAGAAGATAAAGAACAATTAATTGA
TTTACAAAATAGAGAACCTGGTTTATACAAAAATCAACAAGATCTTAAACAAGAGAAAAG
AGCCAATCAACAAGAATTAATCAATTATGAATTGAATTTACAAGAAGATCAAGAACAATA
TGAACTTTTATTAGATCAACTCTATGATGAACAACAACAACAACCACAAAAAGTTTCAAA
TAAACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGNNCAACA
AATCCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATCAGCAATTATTAGACCAAGA
ACAAAATCA
Length of connected seq. 779
Full length Seq ID -
Full length Seq. -
Length of full length seq. -