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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHH547
Library CH
(Link to library)
Clone ID CHH547
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16419-1
Original site URL
Representative seq. ID CHH547P
(Link to Original site)
Representative DNA sequence 
>CHH547 (CHH547Q) /CSM/CH/CHH5-B/CHH547Q.Seq.d/
ATTATTNAATTTTATTTTTAATNAATTCAAATTAAAAAAAAAACAATAACTAACTAAGTT
AAAAATAAAAAAATAATAAAGGATGTTGTTTCTAAAAAATATTGGAGTATTTTTTATGAT
ATTCCTTGTATCAAAATCCTATGCGACGGATTGTAATAAAATTACTAATGAANAANAATG
TCATAAATCTTCGGAATGTATTGTTATAAATTATACACCATGTTGNGGTGAACAAAAATG
GGCTTGCTCTAAAGGTACATTTGATACTTGTACATATGAAAATAGTTGTTATAGAAATTC
ATCCAATAACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATTTATTAA
AATTACAACTCCAACCGAGTATTCTTGTTCTGATGCCAANATTAAAGAATGTGCCTTATT
AGGTAAATCATGTAGTTTCCAAAANAACTCTTGTTCAAATCCAACTTCCTGTTGCCCAGG
TGAATCAATTTGTGAAGGTTTAAGCTCTGGTAGTTCAACATCTGGTGGGTGGTTCATCAX
XXXXXXXXXATTTGATGATCATGGTANAAAATGTTGTGTAAAGATTCATTGTGATGAAGT
TTGTGATTTAGATTGTGGTAGAGGTTTTGAATGTAAAATTAGACATGATGGTTCAAAATG
TTGTGTCNGTTCAGAAAGA
sequence update 2002.10.25
Translated Amino Acid sequence 
lxnfifnxfklkkkq*ltklkikk**RMLFLKNIGVFFMIFLVSKSYATDCNKITNEXXC
HKSSECIVINYTPCXGEQKWACSKGTFDTCTYENSCYRNSSNNQVVEVSNKCFNLDGFIK
ITTPTEYSCSDAXIKECALLGKSCSFQXNSCSNPTSCCPGESICEGLSSGSSTSGGWFI-
--

---FDDHGXKCCVKIHCDEVCDLDCGRGFECKIRHDGSKCCVXSER
Translated Amino Acid sequence (All Frames) 
Frame A:
iixfyf*xiqikkktitn*vknkkiikdvvskkywsifydipcikilcdgl**ny**xxm
s*ifgmycyklytmlx*tkmgll*ryi*ylyi*k*ll*kfiq*psc*sik*mlqs*wiy*
nynsnrvflf*cqx*rmclir*im*fpkxllfksnfllpr*inl*rfklw*fniwwvvh-
--

---i**swxkmlckdsl**sl*frlw*rf*m*n*t*wfkmlcxfrk

Frame B:
lxnfifnxfklkkkq*ltklkikk**RMLFLKNIGVFFMIFLVSKSYATDCNKITNEXXC
HKSSECIVINYTPCXGEQKWACSKGTFDTCTYENSCYRNSSNNQVVEVSNKCFNLDGFIK
ITTPTEYSCSDAXIKECALLGKSCSFQXNSCSNPTSCCPGESICEGLSSGSSTSGGWFI-
--

---FDDHGXKCCVKIHCDEVCDLDCGRGFECKIRHDGSKCCVXSER

Frame C:
yxilflxnsn*kknnn*ls*k*knnkgccf*kileyfl*yslyqnpmrrivikllmxxnv
inlrnvll*iihhvxvnknglalkvhlilvhmkivvieihpitkllkyqinasilmdllk
lqlqpsilvlmpxlknvpy*vnhvvskxtlvqiqlpvaqvnqfvkv*alvvqhlvggss-
--

---lmimvxnvv*rfivmkfvi*ivvevlnvkldmmvqnvvsvqk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHH547 (CHH547Q) /CSM/CH/CHH5-B/CHH547Q.Seq.d/                       1100   0.0
CHQ619 (CHQ619Q) /CSM/CH/CHQ6-A/CHQ619Q.Seq.d/                        888   0.0
CHJ878 (CHJ878Q) /CSM/CH/CHJ8-D/CHJ878Q.Seq.d/                        888   0.0
CHI566 (CHI566Q) /CSM/CH/CHI5-C/CHI566Q.Seq.d/                        888   0.0
SLG501 (SLG501Q) /CSM/SL/SLG5-A/SLG501Q.Seq.d/                        878   0.0
SHJ685 (SHJ685Q) /CSM/SH/SHJ6-D/SHJ685Q.Seq.d/                        878   0.0
SFL250 (SFL250Q) /CSM/SF/SFL2-C/SFL250Q.Seq.d/                        878   0.0
SFK426 (SFK426Q) /CSM/SF/SFK4-B/SFK426Q.Seq.d/                        878   0.0
SFK212 (SFK212Q) /CSM/SF/SFK2-A/SFK212Q.Seq.d/                        878   0.0
SFJ257 (SFJ257Q) /CSM/SF/SFJ2-C/SFJ257Q.Seq.d/                        878   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25144|U25144.1 Dictyostelium discoideum spore coat protein SP87 (PspD) gene, complete cds.   654   0.0    5
AC117267|AC117267.2 Dictyostelium discoideum chromosome 2 map 5836255-5862024 strain AX4, complete sequence.   654   0.0    6
X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein.    56   8e-04  1
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds.    56   8e-04  1
BD460387|BD460387.1 Diagnosis of Diseases Associated with Cell Cycle.    32   0.029  5
BD452309|BD452309.1 Diagnosis of Diseases Associated with Cell Cycle.    32   0.029  5
AX348726|AX348726.1 Sequence 184 from Patent WO0202807.            32   0.029  5
AX344319|AX344319.1 Sequence 166 from Patent WO0200926.            32   0.029  5
AX251923|AX251923.1 Sequence 184 from Patent WO0168911.            32   0.029  5
BS000193|BS000193.1 Pan troglodytes chromosome 22 clone:PTB-117K17, map 22, partial sequences.    36   0.14   6
dna update 2004.11.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...   206   5e-52
(Q6TU45) RecName: Full=Probable spore coat protein sigD; AltName...    89   1e-16
(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor...    72   2e-11
X52105_1(X52105|pid:none) Dictyostelium discoideum SP60 gene for...    72   2e-11
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;        50   4e-05
(A2YGP9) RecName: Full=Cation transporter HKT1;          Short=O...    34   3.3
(Q93XI5) RecName: Full=Cation transporter HKT2;          Short=O...    33   7.4
protein update 2009. 4. 2
PSORT 

 psg: 1.02  gvh: 0.68  alm: 0.51  top: 0.33  tms: 0.00  mit: 0.38  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: extracellular, including cell wall
	 12.0 %: mitochondrial
	  8.0 %: cytoplasmic
	  8.0 %: nuclear
	  8.0 %: endoplasmic reticulum
	  4.0 %: Golgi
	  4.0 %: vacuolar

>> prediction for CHH547 is exc
5' end seq. ID CHH547F
5' end seq. 
>CHH547F.Seq
ATTATTNAATTTTATTTTTAATNAATTCAAATTAAAAAAAAAACAATAACTAACTAAGTT
AAAAATAAAAAAATAATAAAGGATGTTGTTTCTAAAAAATATTGGAGTATTTTTTATGAT
ATTCCTTGTATCAAAATCCTATGCGACGGATTGTAATAAAATTACTAATGAANAANAATG
TCATAAATCTTCGGAATGTATTGTTATAAATTATACACCATGTTGNGGTGAACAAAAATG
GGCTTGCTCTAAAGGTACATTTGATACTTGTACATATGAAAATAGTTGTTATAGAAATTC
ATCCAATAACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATTTATTAA
AATTACAACTCCAACCGAGTATTCTTGTTCTGATGCCAANATTAAAGAATGTGCCTTATT
AGGTAAATCATGTAGTTTCCAAAANAACTCTTGTTCAAATCCAACTTCCTGTTGCCCAGG
TGAATCAATTTGTGAAGGTTTAAGCTCTGGTAGTTCAACATCTGGTGGGTGGTTCATCAN
NNNNNNNNN
Length of 5' end seq. 549
3' end seq. ID CHH547Z
3' end seq. 
>CHH547Z.Seq
NNNNNNNNNNATTTGATGATCATGGTANAAAATGTTGTGTAAAGATTCATTGTGATGAAG
TTTGTGATTTAGATTGTGGTAGAGGTTTTGAATGTAAAATTAGACATGATGGTTCAAAAT
GTTGTGTCNGTTCAGAAAGA
Length of 3' end seq. 140
Connected seq. ID CHH547P
Connected seq. 
>CHH547P.Seq
ATTATTNAATTTTATTTTTAATNAATTCAAATTAAAAAAAAAACAATAACTAACTAAGTT
AAAAATAAAAAAATAATAAAGGATGTTGTTTCTAAAAAATATTGGAGTATTTTTTATGAT
ATTCCTTGTATCAAAATCCTATGCGACGGATTGTAATAAAATTACTAATGAANAANAATG
TCATAAATCTTCGGAATGTATTGTTATAAATTATACACCATGTTGNGGTGAACAAAAATG
GGCTTGCTCTAAAGGTACATTTGATACTTGTACATATGAAAATAGTTGTTATAGAAATTC
ATCCAATAACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATTTATTAA
AATTACAACTCCAACCGAGTATTCTTGTTCTGATGCCAANATTAAAGAATGTGCCTTATT
AGGTAAATCATGTAGTTTCCAAAANAACTCTTGTTCAAATCCAACTTCCTGTTGCCCAGG
TGAATCAATTTGTGAAGGTTTAAGCTCTGGTAGTTCAACATCTGGTGGGTGGTTCATCA-
---------ATTTGATGATCATGGTANAAAATGTTGTGTAAAGATTCATTGTGATGAAGT
TTGTGATTTAGATTGTGGTAGAGGTTTTGAATGTAAAATTAGACATGATGGTTCAAAATG
TTGTGTCNGTTCAGAAAGA
Length of connected seq. 669
Full length Seq ID -
Full length Seq. -
Length of full length seq. -