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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHH542
Library CH
(Link to library)
Clone ID CHH542
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHH542P
(Link to Original site)
Representative DNA sequence 
>CHH542 (CHH542Q) /CSM/CH/CHH5-B/CHH542Q.Seq.d/
CTGCAAATTAAAATCATTAAAAATAAAAAAAATAAAAAATTTTATTATTTTTATTAATAT
TAATAATTTTCTTTTATTAATTATTATAATAGTTTTCTTTTTTTTTTTTATAATTTTTTA
TTTATAAAGTTTAATAATAATAATAATAATAATAATAATAATAATATTCATTTTTCCNTA
TAATNAAXXXXXXXXXXTAGTAACATGAAATTCNCTATGAATGGTAGTTTAATCATTGGT
ACTTTGGATGGTGCAAATGTTGAAATCGCCGAAGAAGTTGGTCAAGAGAATATGTTTATC
TTTGGTTTACGTACAAGTGAAGTTGAAGCTGATCGTGAAAAAATGACAAACAAAGAAGTC
AACATTGACCCACGTNTTCAAGAGGTATTCNTTAATATTGAATTAGGTACATTTGGTCCA
CCAGATGTTTTCAGACCAATCTTGGANTCTTTAATCTTTAGTGATTTCTACTTAAGCATT
CAAGATTTCCCA
sequence update 2002.10.25
Translated Amino Acid sequence 
cklkslkikkiknfiifininnfllliiiivfffffiifyl*SLIIIIIIIIIIIFIFPY
NX---

---SNMKFXMNGSLIIGTLDGANVEIAEEVGQENMFIFGLRTSEVEADREKMTNKEVNID
PRXQEVFXNIELGTFGPPDVFRPILXSLIFSDFYLSIQDFP
Translated Amino Acid sequence (All Frames) 
Frame A:
lqikiiknkknkkfyyfy*y**fsfinyynsflfffynflfikfnnnnnnnnnnnihfsx
*x---

---**heixyew*fnhwyfgwckc*nrrrswsreyvylwftyk*s*s*s*kndkqrsqh*
ptxsrgix*y*iryiwstrcfqtnlgxfnl**fllkhsrfp

Frame B:
cklkslkikkiknfiifininnfllliiiivfffffiifyl*SLIIIIIIIIIIIFIFPY
NX---

---SNMKFXMNGSLIIGTLDGANVEIAEEVGQENMFIFGLRTSEVEADREKMTNKEVNID
PRXQEVFXNIELGTFGPPDVFRPILXSLIFSDFYLSIQDFP

Frame C:
an*nh*k*kk*killflliliiffy*ll**fsfffl*ffiykv***********ysffxi
x---

---vt*nsl*mvv*slvlwmvqmlkspkklvkriclslvyvqvklklivkk*qtkkstlt
hvfkrysliln*vhlvhqmfsdqswxl*slvist*afkis
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHJ355 (CHJ355Q) /CSM/CH/CHJ3-C/CHJ355Q.Seq.d/                        561   e-159
CHH542 (CHH542Q) /CSM/CH/CHH5-B/CHH542Q.Seq.d/                        561   e-159
SHF274 (SHF274Q) /CSM/SH/SHF2-D/SHF274Q.Seq.d/                        555   e-157
VHM611 (VHM611Q) /CSM/VH/VHM6-A/VHM611Q.Seq.d/                        553   e-157
VHL868 (VHL868Q) /CSM/VH/VHL8-C/VHL868Q.Seq.d/                        553   e-157
VHJ473 (VHJ473Q) /CSM/VH/VHJ4-D/VHJ473Q.Seq.d/                        553   e-157
VHG805 (VHG805Q) /CSM/VH/VHG8-A/VHG805Q.Seq.d/                        553   e-157
VHG443 (VHG443Q) /CSM/VH/VHG4-B/VHG443Q.Seq.d/                        553   e-157
VHE279 (VHE279Q) /CSM/VH/VHE2-D/VHE279Q.Seq.d/                        553   e-157
VHA773 (VHA773Q) /CSM/VH/VHA7-D/VHA773Q.Seq.d/                        553   e-157
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X62142|X62142.1 D. discoideum glpV gene for glycogen phosphorylase 1.   553   e-154  2
M77492|M77492.1 Dictyostelium discoideum glycoprotein phosphorylase 2 (glpD) gene, complete cds.    74   2e-09  1
AF542095|AF542095.1 Entamoeba histolytica glycogen phosphorylase-2 mRNA, partial cds.    70   4e-08  1
BH149199|BH149199.1 ENTQG01TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    68   1e-07  1
AZ550934|AZ550934.1 ENTEY06TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    68   1e-07  1
AY050311|AY050311.1 Entamoeba histolytica glycogen phosphorylase mRNA, complete cds.    68   1e-07  1
AZ693437|AZ693437.1 ENTKO14TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    68   1e-07  1
AZ668559|AZ668559.1 ENTLD89TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    64   2e-06  1
CD573799|CD573799.1 UCRPT01_02_C04_T7 Poncirus trifoliata CTV-challenged cDNA library - UCR Poncirus trifoliata cDNA clone UCRPT01_02_C04, mRNA sequence.    40   0.002  2
CV714035|CV714035.1 UCRCS08_0003L02_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0003L02, mRNA sequence.    40   0.002  2
dna update 2004.11.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X62142_1(X62142|pid:none) D. discoideum glpV gene for glycogen p...   184   7e-46
(Q00766) RecName: Full=Glycogen phosphorylase 1;          Short=...   184   7e-46
DQ279077_1(DQ279077|pid:none) Chlamydomonas reinhardtii PhoB (PH...    95   7e-19
AP006852_90(AP006852|pid:none) Candida albicans genomic DNA, chr...    94   2e-18
DQ279079_1(DQ279079|pid:none) Chlamydomonas reinhardtii PhoA (PH...    92   6e-18
CR382138_967(CR382138|pid:none) Debaryomyces hansenii strain CBS...    92   6e-18
CR954211_102(CR954211|pid:none) Ostreococcus tauri strain OTTH05...    92   8e-18
EU165056_1(EU165056|pid:none) Cyanophora paradoxa starch phospho...    91   1e-17
CR382132_179(CR382132|pid:none) Yarrowia lipolytica strain CLIB1...    89   5e-17
CP000499_611(CP000499|pid:none) Pichia stipitis CBS 6054 chromos...    89   5e-17
protein update 2009. 4. 2
PSORT 

 psg: 1.02  gvh: 0.40  alm: 0.04  top: 0.47  tms: 0.07  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 20.0 %: nuclear
	 16.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall

>> prediction for CHH542 is end
5' end seq. ID CHH542F
5' end seq. 
>CHH542F.Seq
CTGCAAATTAAAATCATTAAAAATAAAAAAAATAAAAAATTTTATTATTTTTATTAATAT
TAATAATTTTCTTTTATTAATTATTATAATAGTTTTCTTTTTTTTTTTTATAATTTTTTA
TTTATAAAGTTTAATAATAATAATAATAATAATAATAATAATAATATTCATTTTTCCNTA
TAATNAANNNNNNNNNN
Length of 5' end seq. 197
3' end seq. ID CHH542Z
3' end seq. 
>CHH542Z.Seq
NNNNNNNNNNTAGTAACATGAAATTCNCTATGAATGGTAGTTTAATCATTGGTACTTTGG
ATGGTGCAAATGTTGAAATCGCCGAAGAAGTTGGTCAAGAGAATATGTTTATCTTTGGTT
TACGTACAAGTGAAGTTGAAGCTGATCGTGAAAAAATGACAAACAAAGAAGTCAACATTG
ACCCACGTNTTCAAGAGGTATTCNTTAATATTGAATTAGGTACATTTGGTCCACCAGATG
TTTTCAGACCAATCTTGGANTCTTTAATCTTTAGTGATTTCTACTTAAGCATTCAAGATT
TCCCA
Length of 3' end seq. 305
Connected seq. ID CHH542P
Connected seq. 
>CHH542P.Seq
CTGCAAATTAAAATCATTAAAAATAAAAAAAATAAAAAATTTTATTATTTTTATTAATAT
TAATAATTTTCTTTTATTAATTATTATAATAGTTTTCTTTTTTTTTTTTATAATTTTTTA
TTTATAAAGTTTAATAATAATAATAATAATAATAATAATAATAATATTCATTTTTCCNTA
TAATNAA----------TAGTAACATGAAATTCNCTATGAATGGTAGTTTAATCATTGGT
ACTTTGGATGGTGCAAATGTTGAAATCGCCGAAGAAGTTGGTCAAGAGAATATGTTTATC
TTTGGTTTACGTACAAGTGAAGTTGAAGCTGATCGTGAAAAAATGACAAACAAAGAAGTC
AACATTGACCCACGTNTTCAAGAGGTATTCNTTAATATTGAATTAGGTACATTTGGTCCA
CCAGATGTTTTCAGACCAATCTTGGANTCTTTAATCTTTAGTGATTTCTACTTAAGCATT
CAAGATTTCCCA
Length of connected seq. 482
Full length Seq ID -
Full length Seq. -
Length of full length seq. -