>CHH526 (CHH526Q) /CSM/CH/CHH5-B/CHH526Q.Seq.d/
XXXXXXXXXXTNTTTGATGAGTTGGATAGTATTGCACGTTTTAGAGGTTCATCACAAGGT
GATGCTGGTGGTGCTGGTGATAGAGTTATCAATCAAATTTTAACTGAAATGGATGGTATG
AACGCCAAGAAGAACGTTTTCATCATTGGTGNTACCAATAGACCAGATATCATCGATCCA
GCTATCCTCCGTCCAGGTCGTTTAGATCAACTCATTTACATTCCATTACCAGATTTACCA
TTTCGTGTTGCCATTCTCAAGGCTTGTNTCAATAAATCACCAGTCGCCAAGGATGTAGAT
TTAGAATTTTTGGGTCAAAAGANTCAAGGTTTTTNTGGTGCAGATTTAACTGAAATTTGT
CAACGTGCCTGTAAATTAGCTANTNGTGAATCCATTGAAAAGGATATTGAATCCACCAAA
GCCCGTCAAGAATTTGGTGATACCAAGANGGAAGATGANTNTGTCGATCCAGTACCAGAA
ATTAATNGTGATCACTTCCAAGAAGCCATGAGATNTGCTNGTCGTTCTGTATCCGATAAT
GATATTAGAAAATATGAAAGCTTTGCTCAAACTTTAGTTCAATCAAGAGGTNTTGGTAAT
AATTTCAAATTCCCAGATCAAGAATCTTCAGGTCAATTCAATCAAGA

---FDELDSIARFRGSSQGDAGGAGDRVINQILTEMDGMNAKKNVFIIGXTNRPDIIDPA
ILRPGRLDQLIYIPLPDLPFRVAILKACXNKSPVAKDVDLEFLGQKXQGFXGADLTEICQ
RACKLAXXESIEKDIESTKARQEFGDTKXEDXXVDPVPEINXDHFQEAMRXAXRSVSDND
IRKYESFAQTLVQSRGXGNNFKFPDQESSGQFNQ

Frame A:
---x**vg*yctf*rfitr*cwwcw**syqsnfn*ngwyerqeerfhhwxyq*tryhrss
yppsrsfrsthlhsitrftiscchsqglxq*itsrqgcrfrifgskxsrfxwcrfn*nls
tcl*isxx*ih*kgy*ihqspsriw*yqxgr*xcrsstrn*x*slprshexcxsfcir**
y*ki*klcsnfssikrxw**fqiprsrifrsiqsr


Frame B:
---FDELDSIARFRGSSQGDAGGAGDRVINQILTEMDGMNAKKNVFIIGXTNRPDIIDPA
ILRPGRLDQLIYIPLPDLPFRVAILKACXNKSPVAKDVDLEFLGQKXQGFXGADLTEICQ
RACKLAXXESIEKDIESTKARQEFGDTKXEDXXVDPVPEINXDHFQEAMRXAXRSVSDND
IRKYESFAQTLVQSRGXGNNFKFPDQESSGQFNQ


Frame C:
---lmswivlhvlevhhkvmlvvlvielsikf*lkwmv*tprrtfsslvxpidqissiql
ssvqvv*insftfhyqiyhfvlpfsrlvsinhqsprm*i*nfwvkrxkvfxvqi*lkfvn
vpvn*lxvnplkrilnppkpvknlviprxkmxxsiqyqklxvitskkp*dxlvvlypimi
lenmkallkl*fnqevlviisnsqiknlqvnsik

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHH526 (CHH526Q) /CSM/CH/CHH5-B/CHH526Q.Seq.d/                       1146   0.0
CHH851 (CHH851Q) /CSM/CH/CHH8-C/CHH851Q.Seq.d/                       1128   0.0
VSI623 (VSI623Q) /CSM/VS/VSI6-A/VSI623Q.Seq.d/                       1114   0.0
VHJ302 (VHJ302Q) /CSM/VH/VHJ3-A/VHJ302Q.Seq.d/                       1112   0.0
AFH318 (AFH318Q) /CSM/AF/AFH3-A/AFH318Q.Seq.d/                       1112   0.0
AHL112 (AHL112Q) /CSM/AH/AHL1-A/AHL112Q.Seq.d/                       1110   0.0
AHE864 (AHE864Q) /CSM/AH/AHE8-C/AHE864Q.Seq.d/                       1110   0.0
AHI573 (AHI573Q) /CSM/AH/AHI5-D/AHI573Q.Seq.d/                       1108   0.0
CHN575 (CHN575Q) /CSM/CH/CHN5-D/CHN575Q.Seq.d/                       1102   0.0
SFF423 (SFF423Q) /CSM/SF/SFF4-A/SFF423Q.Seq.d/                       1098   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U83085|U83085.2 Dictyostelium discoideum cell division cycle protein 48 (cdcD) mRNA, complete cds.   595   0.0    2
CB814564|CB814564.1 USDA-FP_100042 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-01_D12 5', mRNA sequence.   131   9e-33  3
CV239703|CV239703.1 WS0233.B21_D16 PT-MB-A-13 Populus balsamifera subsp. trichocarpa cDNA clone WS0233_D16 3', mRNA sequence.    80   5e-32  4
BI505199|BI505199.1 BB170019B10G02.5 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170019B10G02 5', mRNA sequence.    68   2e-31  6
AL440049|AL440049.1 T7 end of clone BD0AA009F04 of library BD0AA from strain CBS 94 of  Candida tropicalis.   115   2e-24  2
BI505437|BI505437.1 BB170025B10F03.5 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170025B10F03 5', mRNA sequence.    76   5e-23  4
BE579889|BE579889.1 kq34a03.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to WP:C41C4.8 CE05402 TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE HOMOLOG 2 ;, mRNA sequence.    72   1e-22  3
AL440050|AL440050.1 T3 end of clone BD0AA009F04 of library BD0AA from strain CBS 94 of  Candida tropicalis.   109   1e-22  2
BI506081|BI506081.1 BB170016B20F02.5 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170016B20F02 5', mRNA sequence.    76   2e-22  4
CN594822|CN594822.1 TTE00014937 Normalized large Tetrahymena thermophila cDNA, mRNA sequence.   115   9e-22  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U83085_1(U83085|pid:none) Dictyostelium discoideum cell division...   347   1e-94
BC114306_1(BC114306|pid:none) Danio rerio zgc:136908, mRNA (cDNA...   258   1e-67
AB248089_1(AB248089|pid:none) Haemaphysalis longicornis VCP gene...   258   1e-67
(P54812) RecName: Full=Transitional endoplasmic reticulum ATPase...   257   2e-67
(P54811) RecName: Full=Transitional endoplasmic reticulum ATPase...   256   5e-67
AK167794_1(AK167794|pid:none) Mus musculus TIB-55 BB88 cDNA, RIK...   254   1e-66
AK083821_1(AK083821|pid:none) Mus musculus 12 days embryo spinal...   254   1e-66
S25197(S25197;S30329) transitional endoplasmic reticulum ATPase ...   254   1e-66
BC122550_1(BC122550|pid:none) Homo sapiens valosin-containing pr...   254   1e-66
AL137377_1(AL137377|pid:none) Homo sapiens mRNA; cDNA DKFZp434K0...   254   1e-66

 psg: 0.75  gvh: 0.41  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHH526 is cyt

>CHH526Z.Seq
NNNNNNNNNNTNTTTGATGAGTTGGATAGTATTGCACGTTTTAGAGGTTCATCACAAGGT
GATGCTGGTGGTGCTGGTGATAGAGTTATCAATCAAATTTTAACTGAAATGGATGGTATG
AACGCCAAGAAGAACGTTTTCATCATTGGTGNTACCAATAGACCAGATATCATCGATCCA
GCTATCCTCCGTCCAGGTCGTTTAGATCAACTCATTTACATTCCATTACCAGATTTACCA
TTTCGTGTTGCCATTCTCAAGGCTTGTNTCAATAAATCACCAGTCGCCAAGGATGTAGAT
TTAGAATTTTTGGGTCAAAAGANTCAAGGTTTTTNTGGTGCAGATTTAACTGAAATTTGT
CAACGTGCCTGTAAATTAGCTANTNGTGAATCCATTGAAAAGGATATTGAATCCACCAAA
GCCCGTCAAGAATTTGGTGATACCAAGANGGAAGATGANTNTGTCGATCCAGTACCAGAA
ATTAATNGTGATCACTTCCAAGAAGCCATGAGATNTGCTNGTCGTTCTGTATCCGATAAT
GATATTAGAAAATATGAAAGCTTTGCTCAAACTTTAGTTCAATCAAGAGGTNTTGGTAAT
AATTTCAAATTCCCAGATCAAGAATCTTCAGGTCAATTCAATCAAGA