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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHH502
Library CH
(Link to library)
Clone ID CHH502
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16264-1|Contig-U16293-1
Original site URL
Representative seq. ID CHH502P
(Link to Original site)
Representative DNA sequence 
>CHH502 (CHH502Q) /CSM/CH/CHH5-A/CHH502Q.Seq.d/
AAGAATAATTTGAAATTCAATTTTATTAAATAATAATTTATCTCATTTTATATATTTTTT
TTTTTTAGNNCTACATAACCCACCTNTAAAAAAAAAAATTAAAAAAANTAAAAAAANNCC
CXXXXXXXXXXTTGAAGATGTTATTAGTTCCATTCNTTTTGGAAGAATTTAGAACCATCA
CCATTCCACCACAATCTGGTTTAACTCNTGATAGAAATTTAGGTTACCGTATTGGTGCTG
TCAATCTCTCATCGATTGAATTGCTTCCAGAGAATATTCATTTTGAAATCTCGCATAAAA
CCAATGCTGATCCATACACCNTCTCCATCATTGATCCAGATACTATCGTTTGGATTGAAC
TCACTTCAATTCGTGCTCGTATCAATGGCTTTNCCATGGGAGTTTGCCCCCATTCANNTT
CCCNCCNATTCGTGATAGNGGTTTAGCAAATNTTTTAGTNGATGGTANAGGTGCT
sequence update 2002.10.25
Translated Amino Acid sequence 
rii*NSILLNNNLSHFIYFFFLXLHNPPXKKKIKKXKKXP---

---LKMLLVPFXLEEFRTITIPPQSGLTXDRNLGYRIGAVNLSSIELLPENIHFEISHKT
NADPYTXSIIDPDTIVWIELTSIRARINGFXMGVCPHSXSXXFVIXV*qxf*xmvxv
Translated Amino Acid sequence (All Frames) 
Frame A:
knnlkfnfik**fisfyiffffxxt*ptxkkkn*kx*kxx---

---LKMLLVPFXLEEFRTITIPPQSGLTXDRNLGYRIGAVNLSSIELLPENIHFEISHKT
NADPYTXSIIDPDTIVWIELTSIRARINGFXMGVCPHSXSXXFVIXV*qxf*xmvxv

Frame B:
rii*NSILLNNNLSHFIYFFFLXLHNPPXKKKIKKXKKXP---

---*rcy*fhsfwknlepspfhhnlv*lxiei*vtvlvlsishrlncfqrifilksrikp
mlihtpspsliqilsfglnslqfvlvsmaxpwefapixxpxxs**xfskxfsxwxrc

Frame C:
e*feiqfy*iiiylilyifff*xyithl*kkklkkxkkx---

---edvissixfgri*nhhhsttiwfns**kfrlpywccqslid*iasreysf*nla*nq
c*sihxlhh*sryyrld*thfnscsyqwlxhgslppfxfppirdxglanxlvdgxga
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHH502 (CHH502Q) /CSM/CH/CHH5-A/CHH502Q.Seq.d/                        581   e-165
CHR124 (CHR124Q) /CSM/CH/CHR1-A/CHR124Q.Seq.d/                        505   e-142
CHQ724 (CHQ724Q) /CSM/CH/CHQ7-A/CHQ724Q.Seq.d/                        505   e-142
CHP627 (CHP627Q) /CSM/CH/CHP6-B/CHP627Q.Seq.d/                        505   e-142
CHO139 (CHO139Q) /CSM/CH/CHO1-B/CHO139Q.Seq.d/                        505   e-142
CHN318 (CHN318Q) /CSM/CH/CHN3-A/CHN318Q.Seq.d/                        505   e-142
CHM583 (CHM583Q) /CSM/CH/CHM5-D/CHM583Q.Seq.d/                        505   e-142
CHL753 (CHL753Q) /CSM/CH/CHL7-C/CHL753Q.Seq.d/                        505   e-142
CHL694 (CHL694Q) /CSM/CH/CHL6-D/CHL694Q.Seq.d/                        505   e-142
CHL434 (CHL434Q) /CSM/CH/CHL4-B/CHL434Q.Seq.d/                        505   e-142
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC134674|AC134674.1 Homo sapiens chromosome 15 clone CTD-2511J11 map 15, LOW-PASS SEQUENCE SAMPLING.    38   0.002  3
X03240|X03240.1 Drosophila yakuba complete mitochondrial sequence.    42   0.005  3
U37541|U37541.1 Drosophila melanogaster complete mitochondrial genome.    38   0.097  3
AC151650|AC151650.1 Dasypus novemcinctus clone VMRC5-336H4, WORKING DRAFT SEQUENCE, 5 unordered pieces.    40   0.10   5
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence.    38   0.28   4
AY653733|AY653733.1 Mimivirus, complete genome.                    40   0.37   12
AC122489|AC122489.3 Mus musculus chromosome 13 clone RP24-386H10, complete sequence.    46   0.52   1
BM433068|BM433068.1 1JEJ9E4.ab1 Bos taurus Jejunum #1 library Bos taurus cDNA, mRNA sequence.    46   0.52   1
CK729292|CK729292.1 bend_0B02-005-e01 Day 5 Uterus bend Bos taurus cDNA 3', mRNA sequence.    46   0.52   1
AL772176|AL772176.6 Mouse DNA sequence from clone RP23-37B18 on chromosome 4.    46   0.52   1
dna update 2004.11.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR382125_851(CR382125|pid:none) Kluyveromyces lactis strain NRRL...    32   6.9
CP001099_1839(CP001099|pid:none) Chlorobaculum parvum NCIB 8327,...    32   8.8
AY495652_1(AY495652|pid:none) Cochliobolus heterostrophus polyke...    32   8.8
CP001090_72(CP001090|pid:none) Geobacter lovleyi SZ plasmid pGLO...    32   8.8
protein update 2008.10.31
PSORT 

 psg: 0.96  gvh: 0.39  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.10  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 28.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHH502 is cyt
5' end seq. ID CHH502F
5' end seq. 
>CHH502F.Seq
AAGAATAATTTGAAATTCAATTTTATTAAATAATAATTTATCTCATTTTATATATTTTTT
TTTTTTAGNNCTACATAACCCACCTNTAAAAAAAAAAATTAAAAAAANTAAAAAAANNCC
CNNNNNNNNNN
Length of 5' end seq. 131
3' end seq. ID CHH502Z
3' end seq. 
>CHH502Z.Seq
NNNNNNNNNNTTGAAGATGTTATTAGTTCCATTCNTTTTGGAAGAATTTAGAACCATCAC
CATTCCACCACAATCTGGTTTAACTCNTGATAGAAATTTAGGTTACCGTATTGGTGCTGT
CAATCTCTCATCGATTGAATTGCTTCCAGAGAATATTCATTTTGAAATCTCGCATAAAAC
CAATGCTGATCCATACACCNTCTCCATCATTGATCCAGATACTATCGTTTGGATTGAACT
CACTTCAATTCGTGCTCGTATCAATGGCTTTNCCATGGGAGTTTGCCCCCATTCANNTTC
CCNCCNATTCGTGATAGNGGTTTAGCAAATNTTTTAGTNGATGGTANAGGTGCT
Length of 3' end seq. 354
Connected seq. ID CHH502P
Connected seq. 
>CHH502P.Seq
AAGAATAATTTGAAATTCAATTTTATTAAATAATAATTTATCTCATTTTATATATTTTTT
TTTTTTAGNNCTACATAACCCACCTNTAAAAAAAAAAATTAAAAAAANTAAAAAAANNCC
C----------TTGAAGATGTTATTAGTTCCATTCNTTTTGGAAGAATTTAGAACCATCA
CCATTCCACCACAATCTGGTTTAACTCNTGATAGAAATTTAGGTTACCGTATTGGTGCTG
TCAATCTCTCATCGATTGAATTGCTTCCAGAGAATATTCATTTTGAAATCTCGCATAAAA
CCAATGCTGATCCATACACCNTCTCCATCATTGATCCAGATACTATCGTTTGGATTGAAC
TCACTTCAATTCGTGCTCGTATCAATGGCTTTNCCATGGGAGTTTGCCCCCATTCANNTT
CCCNCCNATTCGTGATAGNGGTTTAGCAAATNTTTTAGTNGATGGTANAGGTGCT
Length of connected seq. 465
Full length Seq ID -
Full length Seq. -
Length of full length seq. -