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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHH460
Library CH
(Link to library)
Clone ID CHH460
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15825-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHH460 (CHH460Q) /CSM/CH/CHH4-C/CHH460Q.Seq.d/
XXXXXXXXXXGTTGATTGTAAAAAAAATATTTTTAAATTATNTCAAGGTGAANATGTTGC
AGTTGAAAANATTGAAACAATAGTTGTAAANAGTGAATACGTTGAACAAGTTTGTATTTA
NAGTGATTTTCAAAAATCATGNGTAATTGCAATCATTNATCCNCATCCANAATCATGTAG
TGAATGGGNTGGTTCAAANAAAANTGATAAAGNCATTAAANAAATTTGTAAAAATCAANA
TTTTATCAAAGTTGTATTGGATGANATAATTAAAAATTGCAAAAAATTTGGTTTTCANGG
ATTTGAAATTCCAAAAGCAATTC
sequence update 2002. 9.10
Translated Amino Acid sequence 
---DCKKNIFKLXQGEXVAVEXIETIVVXSEYVEQVCIXSDFQKSXVIAIIXPHPXSCSE
WXGSXKXDKXIKXICKNQXFIKVVLDXIIKNCKKFGFXGFEIPKAI
Translated Amino Acid sequence (All Frames) 
Frame A:
---livkkiflnyxkvxmlqlkxlkq*l*xvntlnkfvfxvifknhx*lqsxixixnhvv
ngxvqxkxikxlxkfvkixilsklywmx*lkiaknlvfxdlkfqkqf


Frame B:
---*l*kkyf*ixsr*xccs*kx*nnsckx*ir*tslylx*fskimxncnhxsxsxim**
mgwfkxx**xh*xnl*ksxfyqscig*xn*klqkiwfsxi*nsksn


Frame C:
---DCKKNIFKLXQGEXVAVEXIETIVVXSEYVEQVCIXSDFQKSXVIAIIXPHPXSCSE
WXGSXKXDKXIKXICKNQXFIKVVLDXIIKNCKKFGFXGFEIPKAI
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHH460 (CHH460Q) /CSM/CH/CHH4-C/CHH460Q.Seq.d/                        444   e-124
CHO281 (CHO281Q) /CSM/CH/CHO2-D/CHO281Q.Seq.d/                        428   e-119
AHR169 (AHR169Q) /CSM/AH/AHR1-C/AHR169Q.Seq.d/                        422   e-117
CHS265 (CHS265Q) /CSM/CH/CHS2-C/CHS265Q.Seq.d/                        416   e-116
VHD490 (VHD490Q) /CSM/VH/VHD4-D/VHD490Q.Seq.d/                        412   e-114
AHI311 (AHI311Q) /CSM/AH/AHI3-A/AHI311Q.Seq.d/                        410   e-114
VHG380 (VHG380Q) /CSM/VH/VHG3-D/VHG380Q.Seq.d/                        404   e-112
VFM341 (VFM341Q) /CSM/VF/VFM3-B/VFM341Q.Seq.d/                        404   e-112
CHI764 (CHI764Q) /CSM/CH/CHI7-C/CHI764Q.Seq.d/                        404   e-112
CHG452 (CHG452Q) /CSM/CH/CHG4-C/CHG452Q.Seq.d/                        404   e-112
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF025466|AF025466.1 Caenorhabditis elegans cosmid T23F4, complete sequence.    36   6e-05  5
BQ870927|BQ870927.1 QGI10G21.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGI10G21, mRNA sequence.    48   0.087  1
BQ875501|BQ875501.1 QGI8E20.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGI8E20, mRNA sequence.    48   0.087  1
AC006702|AC006702.1 Caenorhabditis elegans clone Y104H12b, WORKING DRAFT SEQUENCE, 3 unordered pieces.    40   0.10   7
AC006800|AC006800.3 Caenorhabditis elegans clone Y52A1, WORKING DRAFT SEQUENCE, 54 unordered pieces.    30   0.19   9
AF067621|AF067621.2 Caenorhabditis elegans cosmid F55F10, complete sequence.    34   0.45   4
AC090999|AC090999.1 Caenorhabditis elegans cosmid Y82E9BR, complete sequence.    36   0.57   5
AC006910|AC006910.2 Caenorhabditis elegans clone Y92H12, WORKING DRAFT SEQUENCE, 36 unordered pieces.    36   0.58   5
AC006701|AC006701.3 Caenorhabditis elegans cosmid Y104H12D, complete sequence.    40   0.68   3
AC117513|AC117513.4 Homo sapiens 3 BAC RP11-451B8 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    36   0.81   4
dna update 2004.11.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC043756_1(BC043756|pid:none) Xenopus laevis fatty acid Coenzyme...    52   8e-06
BC076898_1(BC076898|pid:none) Xenopus tropicalis acyl-CoA synthe...    52   8e-06
BC046740_1(BC046740|pid:none) Xenopus laevis similar to fatty ac...    51   1e-05
BC077120_1(BC077120|pid:none) Danio rerio zgc:101071, mRNA (cDNA...    51   1e-05
AK314452_1(AK314452|pid:none) Homo sapiens cDNA, FLJ95253, highl...    49   7e-05
AK006541_1(AK006541|pid:none) Mus musculus adult male testis cDN...    49   7e-05
(P33124) RecName: Full=Long-chain-fatty-acid--CoA ligase 6;     ...    49   7e-05
AK122702_1(AK122702|pid:none) Homo sapiens cDNA FLJ16173 fis, cl...    49   7e-05
(Q8JZR0) RecName: Full=Long-chain-fatty-acid--CoA ligase 5;     ...    49   7e-05
AB020644_1(AB020644|pid:none) Homo sapiens mRNA for KIAA0837 pro...    49   7e-05
protein update 2009. 5.19
PSORT 

 psg: 0.71  gvh: 0.58  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.14  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: peroxisomal

>> prediction for CHH460 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHH460Z
3' end seq. 
>CHH460Z.Seq
NNNNNNNNNNGTTGATTGTAAAAAAAATATTTTTAAATTATNTCAAGGTGAANATGTTGC
AGTTGAAAANATTGAAACAATAGTTGTAAANAGTGAATACGTTGAACAAGTTTGTATTTA
NAGTGATTTTCAAAAATCATGNGTAATTGCAATCATTNATCCNCATCCANAATCATGTAG
TGAATGGGNTGGTTCAAANAAAANTGATAAAGNCATTAAANAAATTTGTAAAAATCAANA
TTTTATCAAAGTTGTATTGGATGANATAATTAAAAATTGCAAAAAATTTGGTTTTCANGG
ATTTGAAATTCCAAAAGCAATTC
Length of 3' end seq. 323
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -