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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHH410
Library CH
(Link to library)
Clone ID CHH410
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHH410 (CHH410Q) /CSM/CH/CHH4-A/CHH410Q.Seq.d/
XXXXXXXXXXCAGAGAGACTATATGAAGGAAATTCATAATTCCAATTTGAATAAAGCAGT
TCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTC
TCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGA
TGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTA
TGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATT
ACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTC
AAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACA
ACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGA
ATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTA
CTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAA
ACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAA
AAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGATAAATTAAA
TCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAATAATTTAATCATTC
TTNCTTTTTAAAAA
sequence update 2002. 9.10
Translated Amino Acid sequence 
---RDYMKEIHNSNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDA
IEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSN
KNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYL
SDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQQDKLNQ
EKNQQLLEQEQNQK*fnhsxflk
Translated Amino Acid sequence (All Frames) 
Frame A:
---reti*rkfiipi*ikqfkrlkklkdnkmvmvhll*tlirl*lkwemlkimklpmnkm
plnklniynvlkmvkismsmklpnmklpf*mkmnkmllnykmkwtn*nsylkrmkknnfq
ikiynnlmrmkinnnnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfnkrtmlst
*vmlkklnlnwmlnwlkiinkrikmri*fkrnnnlltklkin*kifnmnnksknnkin*i
kkkinny*nknkiknnliilxf*k


Frame B:
---erlyegns*fqfe*sssrg*rn*kttkw*wftcckls*dcnsngkc*k**nyq*trc
h*tsstftty*kw*ryr*v*scpt*sclfr*k*trcc*itk*ngpirtlt*re*rrtifk
*kfttt**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketknstrerccll
e*c*ksst*igc*ig*k**tresr*efssrettis*pn*ksikkyst*ttnprttr*iks
rkkstiirtrtkskii*sfxlfk


Frame C:
---RDYMKEIHNSNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDA
IEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSN
KNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYL
SDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQQDKLNQ
EKNQQLLEQEQNQK*fnhsxflk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHK721 (SHK721Q) /CSM/SH/SHK7-A/SHK721Q.Seq.d/                        765   0.0
SHK538 (SHK538Q) /CSM/SH/SHK5-B/SHK538Q.Seq.d/                        765   0.0
SHG286 (SHG286Q) /CSM/SH/SHG2-D/SHG286Q.Seq.d/                        765   0.0
CHR761 (CHR761Q) /CSM/CH/CHR7-C/CHR761Q.Seq.d/                        765   0.0
CHO677 (CHO677Q) /CSM/CH/CHO6-D/CHO677Q.Seq.d/                        765   0.0
CHM814 (CHM814Q) /CSM/CH/CHM8-A/CHM814Q.Seq.d/                        765   0.0
CHH410 (CHH410Q) /CSM/CH/CHH4-A/CHH410Q.Seq.d/                        765   0.0
CHG195 (CHG195Q) /CSM/CH/CHG1-D/CHG195Q.Seq.d/                        765   0.0
AHC462 (AHC462Q) /CSM/AH/AHC4-C/AHC462Q.Seq.d/                        765   0.0
AHB461 (AHB461Q) /CSM/AH/AHB4-C/AHB461Q.Seq.d/                        765   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   730   0.0    4
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   9e-30  15
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    40   5e-12  21
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34   4e-10  18
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          40   3e-09  24
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    34   8e-09  15
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   9e-09  22
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome.    34   2e-08  27
AE017332|AE017332.1 Mycoplasma hyopneumoniae 232, complete genome.    38   3e-08  25
BA000016|BA000016.3 Clostridium perfringens str. 13 DNA, complete genome.    38   3e-08  32
dna update 2004.11.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   285   1e-75
AE014186_170(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    40   0.11
AJ969441_1(AJ969441|pid:none) Trypanosoma cruzi garp gene for gl...    38   0.41
(Q55GK0) RecName: Full=GATA zinc finger domain-containing protei...    37   0.54
CP001078_829(CP001078|pid:none) Clostridium botulinum E3 str. Al...    37   0.70
AL035475_17(AL035475|pid:none) Plasmodium falciparum MAL4P2.  &A...    37   0.70
EU579525_1(EU579525|pid:none) Plasmodium yoelii sporozoite and l...    37   0.92
AM920435_502(AM920435|pid:none) Penicillium chrysogenum Wisconsi...    36   1.2
AP007164_721(AP007164|pid:none) Aspergillus oryzae RIB40 genomic...    36   1.6
AE017340_1204(AE017340|pid:none) Idiomarina loihiensis L2TR, com...    35   2.0
protein update 2009. 5.19
PSORT 

 psg: 0.55  gvh: 0.17  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for CHH410 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHH410Z
3' end seq. 
>CHH410Z.Seq
NNNNNNNNNNCAGAGAGACTATATGAAGGAAATTCATAATTCCAATTTGAATAAAGCAGT
TCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTC
TCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGA
TGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTA
TGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATT
ACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTC
AAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACA
ACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGA
ATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTA
CTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAA
ACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAA
AAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGATAAATTAAA
TCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAATAATTTAATCATTC
TTNCTTTTTAAAAA
Length of 3' end seq. 794
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -