CHH383 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHH383
Library	CH (Link to library)
Clone ID	CHH383 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U10823-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHH3-D/CHH383Q.Seq.d/
Representative seq. ID	CHH383P (Link to Original site)
Representative DNA sequence	>CHH383 (CHH383Q) /CSM/CH/CHH3-D/CHH383Q.Seq.d/ AATTATTTTTTTTGTTATTGTATTATTTTGTGTTGTTGGATCATTATCAGCATCATTATG TAAATATCCAGGTTATTCAACTCAAGGTGTTACAAAAACAAATAATGGTTATGAGGCAAC ACTTAACCTTATTTCAGCAGGTCCATATGGTAACGATATAGAACAATTAAATTTTCAATT AACTTTTGAAACTAGTCAAATTTTTAGAGTTAGAATTACTGACCCAAATAATCAAAGATG GGAAGTCCCACCAACTGTTAATCAATTAGTTGGAGAAAATCCAGATTCAACTGATTATAT AATTGAATTTACAAATAATCCATTTGGTTTTGCAGCAACTCGTATTTCAACTGGTGAAGT TTTATTTAATACAACTCAACCAAGTGATTGTTCATTTAATGGTTTAATTTATTCAAATTA TTATTTAGAATTAAGTACATCATTCACAGAGAGTAATCCAAATATTTATGGTTTAGGAGA ACGTACAAGTCAATTAAGATTATTTAATAATTTTACATATACTTTATTTGCAAAAGATCA AGGTACAGCAAGTATACCAAATATTAATTTATATGGTTCACATCCATTTTATTTACAACT TTCATCAAGTTCAGGTAATGCAAATGGTGTATTTCTAXXXXXXXXXXTCCATCAGATCCC AAATACTTTTGCAATTGATCAACAATTTTTAGTTGGTACAGGTTTAATGGTATCACCAGT TCTCACTCAAGGTGCTACCACAGTGAATGCTTACTTCCCAAATGATATCTGGTATGAATA TGGTAATGGTTCATTGGTTCAATCAGTTGGTACCCATCAAACTTTAAATGCTCCATTCGA TGTAATCAACGTTCATATGCGTGGTGGTAATATCATTCCAACTCAACCAACCTCCTCATA TGTTACACCAGTTGATGGTATTCCAATTACCACTAAAATCTCTAGAACTTTACCATTTGA ATTGATTATTGCCTTGGATTCTTCATTACAAGCAACTGGTCAATTATTCTTGGATGATGG TGAATCAATTCAAACCTATGTTGATAATAAATACTCTTTCATTCAATTCGATGTTGTCTC CTCACCATCTTCATCTGCCTACAAATTACAATCAACCATTCTCAATAACAATTATAATGG TACCGCTTCTTTAATCATTAATTCTATCCAAATCTACGGTTCGCCATCAGTTCAACAAGT CATTGTTAATGGTAGCCCAATCAATTCATTTAATGCTGTTTCTGATTCAACTCTCTCTGT TTCAAATTTACAACTTGCTTTAGATGAATCCTTTGAAGTTGATTTTGTATTATATTAAAA ATTATCAACAAATAAAATTAAAATNAGTTATATTTTTTT
sequence update	2002.10.25
Translated Amino Acid sequence	IIFFVIVLFCVVGSLSASLCKYPGYSTQGVTKTNNGYEATLNLISAGPYGNDIEQLNFQL TFETSQIFRVRITDPNNQRWEVPPTVNQLVGENPDSTDYIIEFTNNPFGFAATRISTGEV LFNTTQPSDCSFNGLIYSNYYLELSTSFTESNPNIYGLGERTSQLRLFNNFTYTLFAKDQ GTASIPNINLYGSHPFYLQLSSSSGNANGVFL--- ---HQIPNTFAIDQQFLVGTGLMVSPVLTQGATTVNAYFPNDIWYEYGNGSLVQSVGTHQ TLNAPFDVINVHMRGGNIIPTQPTSSYVTPVDGIPITTKISRTLPFELIIALDSSLQATG QLFLDDGESIQTYVDNKYSFIQFDVVSSPSSSAYKLQSTILNNNYNGTASLIINSIQIYG SPSVQQVIVNGSPINSFNAVSDSTLSVSNLQLALDESFEVDFVLY*klstnkikxsyif
Translated Amino Acid sequence (All Frames)	Frame A: nyffcyciilccwiiisiimisrlfnsrcyknkwlgntpyfsrsiwryrtikfsi nfnsnfsnypkskmgsptncsiswrksrfnlyniyksiwfcsnsyfnws fiynstklfiwfnlfkllfrikyiihreskylwfrrtyksikii*fyiyfickrs ryskytkyfiwftsilfttfikfrckwcis--- ---sirsqillqlinnflvqvwyhqfslkvlpqmltsqmisgmnmvmvhwfnqlvpi klmlhsmstficvvvisfqlnqpphmlhqlmvfqlplkslelyhlnllpwilhykql vnyswmmvnqfkpmliintlsfnsmlsphhlhlptnynqpfsitiimvpllslilskst vrhqfnksllmvaqsihlmlfliqlslfqiynllmnplklilyyiknyqqiklkxviff Frame B: IIFFVIVLFCVVGSLSASLCKYPGYSTQGVTKTNNGYEATLNLISAGPYGNDIEQLNFQL TFETSQIFRVRITDPNNQRWEVPPTVNQLVGENPDSTDYIIEFTNNPFGFAATRISTGEV LFNTTQPSDCSFNGLIYSNYYLELSTSFTESNPNIYGLGERTSQLRLFNNFTYTLFAKDQ GTASIPNINLYGSHPFYLQLSSSSGNANGVFL--- ---psdpkyfcnstifswyrfngitsshsrcyhsecllpkylviwwfigsiswyps nfkcsircnqrsyawwyhsnstnllicytswysnyhnlnftiidyclgffitsnw siilgwinsnlc**ilfhsircclltificlqitinhsqqlwyrffnhfypnlr faisstshcwpnqficcffnslcfkfttcfrilsfciilkiinknnxlyff Frame C: lfflllyyfvlldhyqhhyvniqviqlkvlqkqimvmrqhltlfqqvhmvtinnifn llklvkflelelltqiikdgkshqllinlekiqiqliilnlqiihlvlqqlvfqlvkf yliqlnqvivhlmvfiqiiinvhhsqrviqifmvenvqvndyliilhilylqkik vqqvyqiliymvhihfiynfhqvqvmqmvyf--- ---HQIPNTFAIDQQFLVGTGLMVSPVLTQGATTVNAYFPNDIWYEYGNGSLVQSVGTHQ TLNAPFDVINVHMRGGNIIPTQPTSSYVTPVDGIPITTKISRTLPFELIIALDSSLQATG QLFLDDGESIQTYVDNKYSFIQFDVVSSPSSSAYKLQSTILNNNYNGTASLIINSIQIYG SPSVQQVIVNGSPINSFNAVSDSTLSVSNLQLALDESFEVDFVLYklstnkikxsyif
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CHH383 (CHH383Q) /CSM/CH/CHH3-D/CHH383Q.Seq.d/ 2589 0.0 CHR858 (CHR858Q) /CSM/CH/CHR8-C/CHR858Q.Seq.d/ 1376 0.0 AHA841 (AHA841Q) /CSM/AH/AHA8-B/AHA841Q.Seq.d/ 1376 0.0 CHR320 (CHR320Q) /CSM/CH/CHR3-A/CHR320Q.Seq.d/ 1362 0.0 CHF189 (CHF189Q) /CSM/CH/CHF1-D/CHF189Q.Seq.d/ 1350 0.0 SHJ811 (SHJ811Q) /CSM/SH/SHJ8-A/SHJ811Q.Seq.d/ 1348 0.0 SHG509 (SHG509Q) /CSM/SH/SHG5-A/SHG509Q.Seq.d/ 1348 0.0 CHM276 (CHM276Q) /CSM/CH/CHM2-D/CHM276Q.Seq.d/ 1342 0.0 AHM502 (AHM502Q) /CSM/AH/AHM5-A/AHM502Q.Seq.d/ 1334 0.0 AHF873 (AHF873Q) /CSM/AH/AHF8-D/AHF873Q.Seq.d/ 1334 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116984\|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 42 3e-15 29 AC116305\|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 42 7e-11 23 BX842643\|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 2/4. 36 1e-08 22 AC116982\|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 32 4e-08 21 BA000021\|BA000021.3 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome. 38 1e-07 30 AY653733\|AY653733.1 Mimivirus, complete genome. 46 3e-07 33 CR382398\|CR382398.1 Plasmodium falciparum chromosome 6, complete sequence; segment 1/5. 34 7e-07 20 AC117072\|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence. 36 9e-07 15 AL844509\|AL844509.1 Plasmodium falciparum chromosome 13. 34 1e-06 28 AE014841\|AE014841.1 Plasmodium falciparum 3D7 chromosome 11 section 6 of 8 of the complete sequence. 34 2e-06 18
dna update	2004.11.19
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AB000967_1(AB000967\|pid:none) Coturnix japonica GAAI mRNA for ac... 126 2e-27 AF118226_1(AF118226\|pid:none) Hordeum vulgare high pI alpha-gluc... 124 7e-27 AF014806_1(AF014806\|pid:none) Arabidopsis thaliana alpha-glucosi... 123 2e-26 AL163814_11(AL163814\|pid:none) Arabidopsis thaliana DNA chromoso... 122 3e-26 AF016833_1(AF016833\|pid:none) Homo sapiens maltase-glucoamylase ... 121 6e-26 (Q43763) RecName: Full=Alpha-glucosidase; EC=3.2.1.20; ... 120 8e-26 AB057452_1(AB057452\|pid:none) Physcomitrella patens subsp. paten... 120 1e-25 (O43451) RecName: Full=Maltase-glucoamylase, intestinal; Include... 119 2e-25 EU937530_1(EU937530\|pid:none) Mus musculus sucrase-isomaltase mR... 119 3e-25 L25926_1(L25926\|pid:none) Rat sucrase-isomaltase (SI) mRNA, comp... 116 2e-24
protein update	2009. 4. 1
PSORT	psg: 1.02 gvh: 0.74 alm: 0.40 top: 0.60 tms: 0.00 mit: 0.24 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 40.0 %: extracellular, including cell wall 28.0 %: cytoplasmic 16.0 %: mitochondrial 8.0 %: vacuolar 4.0 %: nuclear 4.0 %: endoplasmic reticulum >> prediction for CHH383 is exc
5' end seq. ID	CHH383F
5' end seq.	>CHH383F.Seq AATTATTTTTTTTGTTATTGTATTATTTTGTGTTGTTGGATCATTATCAGCATCATTATG TAAATATCCAGGTTATTCAACTCAAGGTGTTACAAAAACAAATAATGGTTATGAGGCAAC ACTTAACCTTATTTCAGCAGGTCCATATGGTAACGATATAGAACAATTAAATTTTCAATT AACTTTTGAAACTAGTCAAATTTTTAGAGTTAGAATTACTGACCCAAATAATCAAAGATG GGAAGTCCCACCAACTGTTAATCAATTAGTTGGAGAAAATCCAGATTCAACTGATTATAT AATTGAATTTACAAATAATCCATTTGGTTTTGCAGCAACTCGTATTTCAACTGGTGAAGT TTTATTTAATACAACTCAACCAAGTGATTGTTCATTTAATGGTTTAATTTATTCAAATTA TTATTTAGAATTAAGTACATCATTCACAGAGAGTAATCCAAATATTTATGGTTTAGGAGA ACGTACAAGTCAATTAAGATTATTTAATAATTTTACATATACTTTATTTGCAAAAGATCA AGGTACAGCAAGTATACCAAATATTAATTTATATGGTTCACATCCATTTTATTTACAACT TTCATCAAGTTCAGGTAATGCAAATGGTGTATTTCTANNNNNNNNNN
Length of 5' end seq.	647
3' end seq. ID	CHH383Z
3' end seq.	>CHH383Z.Seq NNNNNNNNNNTCCATCAGATCCCAAATACTTTTGCAATTGATCAACAATTTTTAGTTGGT ACAGGTTTAATGGTATCACCAGTTCTCACTCAAGGTGCTACCACAGTGAATGCTTACTTC CCAAATGATATCTGGTATGAATATGGTAATGGTTCATTGGTTCAATCAGTTGGTACCCAT CAAACTTTAAATGCTCCATTCGATGTAATCAACGTTCATATGCGTGGTGGTAATATCATT CCAACTCAACCAACCTCCTCATATGTTACACCAGTTGATGGTATTCCAATTACCACTAAA ATCTCTAGAACTTTACCATTTGAATTGATTATTGCCTTGGATTCTTCATTACAAGCAACT GGTCAATTATTCTTGGATGATGGTGAATCAATTCAAACCTATGTTGATAATAAATACTCT TTCATTCAATTCGATGTTGTCTCCTCACCATCTTCATCTGCCTACAAATTACAATCAACC ATTCTCAATAACAATTATAATGGTACCGCTTCTTTAATCATTAATTCTATCCAAATCTAC GGTTCGCCATCAGTTCAACAAGTCATTGTTAATGGTAGCCCAATCAATTCATTTAATGCT GTTTCTGATTCAACTCTCTCTGTTTCAAATTTACAACTTGCTTTAGATGAATCCTTTGAA GTTGATTTTGTATTATATTAAAAATTATCAACAAATAAAATTAAAATNAGTTATATTTTT TT
Length of 3' end seq.	722
Connected seq. ID	CHH383P
Connected seq.	>CHH383P.Seq AATTATTTTTTTTGTTATTGTATTATTTTGTGTTGTTGGATCATTATCAGCATCATTATG TAAATATCCAGGTTATTCAACTCAAGGTGTTACAAAAACAAATAATGGTTATGAGGCAAC ACTTAACCTTATTTCAGCAGGTCCATATGGTAACGATATAGAACAATTAAATTTTCAATT AACTTTTGAAACTAGTCAAATTTTTAGAGTTAGAATTACTGACCCAAATAATCAAAGATG GGAAGTCCCACCAACTGTTAATCAATTAGTTGGAGAAAATCCAGATTCAACTGATTATAT AATTGAATTTACAAATAATCCATTTGGTTTTGCAGCAACTCGTATTTCAACTGGTGAAGT TTTATTTAATACAACTCAACCAAGTGATTGTTCATTTAATGGTTTAATTTATTCAAATTA TTATTTAGAATTAAGTACATCATTCACAGAGAGTAATCCAAATATTTATGGTTTAGGAGA ACGTACAAGTCAATTAAGATTATTTAATAATTTTACATATACTTTATTTGCAAAAGATCA AGGTACAGCAAGTATACCAAATATTAATTTATATGGTTCACATCCATTTTATTTACAACT TTCATCAAGTTCAGGTAATGCAAATGGTGTATTTCTA----------TCCATCAGATCCC AAATACTTTTGCAATTGATCAACAATTTTTAGTTGGTACAGGTTTAATGGTATCACCAGT TCTCACTCAAGGTGCTACCACAGTGAATGCTTACTTCCCAAATGATATCTGGTATGAATA TGGTAATGGTTCATTGGTTCAATCAGTTGGTACCCATCAAACTTTAAATGCTCCATTCGA TGTAATCAACGTTCATATGCGTGGTGGTAATATCATTCCAACTCAACCAACCTCCTCATA TGTTACACCAGTTGATGGTATTCCAATTACCACTAAAATCTCTAGAACTTTACCATTTGA ATTGATTATTGCCTTGGATTCTTCATTACAAGCAACTGGTCAATTATTCTTGGATGATGG TGAATCAATTCAAACCTATGTTGATAATAAATACTCTTTCATTCAATTCGATGTTGTCTC CTCACCATCTTCATCTGCCTACAAATTACAATCAACCATTCTCAATAACAATTATAATGG TACCGCTTCTTTAATCATTAATTCTATCCAAATCTACGGTTCGCCATCAGTTCAACAAGT CATTGTTAATGGTAGCCCAATCAATTCATTTAATGCTGTTTCTGATTCAACTCTCTCTGT TTCAAATTTACAACTTGCTTTAGATGAATCCTTTGAAGTTGATTTTGTATTATATTAAAA ATTATCAACAAATAAAATTAAAATNAGTTATATTTTTTT
Length of connected seq.	1349
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas