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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHH368
Library CH
(Link to library)
Clone ID CHH368
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11301-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHH368 (CHH368Q) /CSM/CH/CHH3-C/CHH368Q.Seq.d/
XXXXXXXXXXATAATAANNNANGGTNTTNTAATNAATCNANNCNATANNGATNNNANTNA
NNATTNNCNATCNCCAGNTTTATNTTCACNNCNNNCTCANCAAGTTAAACAGGTTCAGCA
NCANCANNANCANCCNCAATCAGAATCNCAGATACANCAACAACCAAAATCACAACCACA
ATCACAAATACAACAACAACCAAACTATCCAGCAATTGAATTCTCAAAAGGTGACGATAT
TAATGATGCAATAATGGAGGTAGTGAATGGTACTTCAAATCCAATTAAAACNAANANTAA
GGGAGANCAAGGTTTT
sequence update 2002. 9.10
Translated Amino Acid sequence 
---IXXGXXXNXXXXDXXXXXXSPXLXSXXXXQVKQVQXXXXXPQSESQIXQQPKSQPQS
QIQQQPNYPAIEFSKGDDINDAIMEVVNGTSNPIKTXXKGXQGF
Translated Amino Acid sequence (All Frames) 
Frame A:
---**xxvx*xixxixxxxxixxxqxyxhxxlxklnrfsxxxxxxnqnxryxnnqnhnhn
hkynnnqtiqqlnsqkvtilmmq*wr**mvlqiqlkxxxrexkv


Frame B:
---nxxxxxnxsxxxxxxxxxxixxfxftxxsxs*tgsaxxxxxxirixdtxttkittti
tnttttklssn*ilkr*ry**cnnggsewyfksn*nxx*grxrf


Frame C:
---IXXGXXXNXXXXDXXXXXXSPXLXSXXXXQVKQVQXXXXXPQSESQIXQQPKSQPQS
QIQQQPNYPAIEFSKGDDINDAIMEVVNGTSNPIKTXXKGXQGF
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHQ753 (CHQ753Q) /CSM/CH/CHQ7-C/CHQ753Q.Seq.d/                        359   2e-98
CHO277 (CHO277Q) /CSM/CH/CHO2-D/CHO277Q.Seq.d/                        359   2e-98
CHH368 (CHH368Q) /CSM/CH/CHH3-C/CHH368Q.Seq.d/                        359   2e-98
CHH188 (CHH188Q) /CSM/CH/CHH1-D/CHH188Q.Seq.d/                        359   2e-98
CHF661 (CHF661Q) /CSM/CH/CHF6-C/CHF661Q.Seq.d/                        359   2e-98
AHE538 (AHE538Q) /CSM/AH/AHE5-B/AHE538Q.Seq.d/                        359   2e-98
CHJ356 (CHJ356Q) /CSM/CH/CHJ3-C/CHJ356Q.Seq.d/                        353   1e-96
SHB396 (SHB396Q) /CSM/SH/SHB3-D/SHB396Q.Seq.d/                        234   6e-61
VHC194 (VHC194Q) /CSM/VH/VHC1-D/VHC194Q.Seq.d/                         46   3e-04
SLG781 (SLG781Q) /CSM/SL/SLG7-D/SLG781Q.Seq.d/                         46   3e-04
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC103294|AC103294.6 Rattus norvegicus clone CH230-142D22, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces.    44   0.002  2
CD759574|CD759574.1 AGENCOURT_14627764 NCI_CGAP_ZKid1 Danio rerio cDNA clone IMAGE:6961159 5', mRNA sequence.    52   0.005  1
CO813676|CO813676.1 AGENCOURT_30337690 NIH_ZGC_14 Danio rerio cDNA clone IMAGE:7404797 5', mRNA sequence.    52   0.005  1
CK869362|CK869362.1 AGENCOURT_19197214 NIH_ZGC_16 Danio rerio cDNA clone IMAGE:7216511 5', mRNA sequence.    52   0.005  1
CK869477|CK869477.1 AGENCOURT_19413538 NIH_ZGC_16 Danio rerio cDNA clone IMAGE:7214425 5', mRNA sequence.    52   0.005  1
CO924563|CO924563.1 AGENCOURT_30430903 NIH_ZGC_14 Danio rerio cDNA clone IMAGE:7405837 5', mRNA sequence.    52   0.005  1
CA472331|CA472331.1 AGENCOURT_10739601 NCI_CGAP_ZKid1 Danio rerio cDNA clone IMAGE:6793049 5', mRNA sequence.    52   0.005  1
CK867873|CK867873.1 AGENCOURT_19196805 NIH_ZGC_16 Danio rerio cDNA clone IMAGE:7216598 5', mRNA sequence.    52   0.005  1
CD758865|CD758865.1 AGENCOURT_14638992 NCI_CGAP_ZKid1 Danio rerio cDNA clone IMAGE:6960853 5', mRNA sequence.    52   0.005  1
CO246993|CO246993.1 AGENCOURT_25674272 NIH_ZGC_20 Danio rerio cDNA clone IMAGE:7293258 5', mRNA sequence.    52   0.005  1
dna update 2004.11.19
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 168,570,819
protein update 2009. 5.19
PSORT 

 psg: 0.75  gvh: 0.50  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for CHH368 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHH368Z
3' end seq. 
>CHH368Z.Seq
NNNNNNNNNNATAATAANNNANGGTNTTNTAATNAATCNANNCNATANNGATNNNANTNA
NNATTNNCNATCNCCAGNTTTATNTTCACNNCNNNCTCANCAAGTTAAACAGGTTCAGCA
NCANCANNANCANCCNCAATCAGAATCNCAGATACANCAACAACCAAAATCACAACCACA
ATCACAAATACAACAACAACCAAACTATCCAGCAATTGAATTCTCAAAAGGTGACGATAT
TAATGATGCAATAATGGAGGTAGTGAATGGTACTTCAAATCCAATTAAAACNAANANTAA
GGGAGANCAAGGTTTT
Length of 3' end seq. 316
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -