>CHH349 (CHH349Q) /CSM/CH/CHH3-C/CHH349Q.Seq.d/
ATTCAACTCAGTAATAATAATAATAAAAATAATAACAATAATAAGGAATTATAATCAAAT
AATAATATAGCTATAATCTATAATTACTATAGTAAAATTACGTATACATATATAAATAAT
TATTATTATCATTGTTTTTAAAAATAAATAAATAAATAATAAAAAAAAAAXXXXXXXXXX
ATTCAACTCAGTAATAATAATAATAAAAATAATAACAATAATAAGGAATTATAATCAAAT
AATAATATAGCTATAATCTATAATTACTATAGTAAAATTACGTATACATATATAAANAAT
TATTATTATCATNTTTTTAAAAATAAATAAATAAANA

fnsviiiikiitiirnynqiii*l*siitivklrihi*iiiiiivfknk*INNKKK---

---FNSVIIIIKIITIIRNYNQIII*l*siitivklrihi*xiiiixflkink*x

Frame A:
iqlsnnnnknnnnnkel*snnniaiiynyyskitytyinnyyyhcf*k*ink**kk---

---iqlsnnnnknnnnnkel*snnniaiiynyyskitytyixnyyyhxfknk*ix

Frame B:
fnsviiiikiitiirnynqiii*l*siitivklrihi*iiiiiivfknk*INNKKK---

---FNSVIIIIKIITIIRNYNQIII*l*siitivklrihi*xiiiixflkink*x

Frame C:
stq*****k**q**giiik**ysynl*ll**nyvyiyk*lllslflkink*iikkk---

---stq*****k**q**giiik**ysynl*ll**nyvyiykxlllsxf*k*ink

 ***** No hits found ******

Lambda     K      H
    1.37    0.711     1.31

Gapped
Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 56,131
Number of Sequences: 97611
Number of extensions: 56131
Number of successful extensions: 1301
Number of sequences better than 10.0: 0
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1301
Number of HSP's gapped (non-prelim): 0
length of query: 337
length of database: 80,480,566
effective HSP length: 18
effective length of query: 319
effective length of database: 78,723,568
effective search space: 25112818192
effective search space used: 25112818192
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)

 ***** No hits found ******

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Hits to DB: 2,462,683
Number of Sequences: 39828016
Number of extensions: 2462683
Number of successful extensions: 57320
Number of sequences better than 10.0: 0
length of query: 337
length of database: [,749,768,127
effective HSP length: 22
effective length of query: 315
effective length of database: Z,873,551,775
effective search space: 13505168809125
effective search space used: 13505168809125
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
[blastall] WARNING:  [000.000]  Reached max 400 HSPs in BlastSaveCurrentHsp, continuing with this limit

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 110,504,740

 psg: 0.90  gvh: 0.18  alm: 0.37  top: 0.40  tms: 0.00  mit: 0.41  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	 24.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for CHH349 is cyt

>CHH349F.Seq
ATTCAACTCAGTAATAATAATAATAAAAATAATAACAATAATAAGGAATTATAATCAAAT
AATAATATAGCTATAATCTATAATTACTATAGTAAAATTACGTATACATATATAAATAAT
TATTATTATCATTGTTTTTAAAAATAAATAAATAAATAATAAAAAAAAAANNNNNNNNNN

>CHH349Z.Seq
NNNNNNNNNNATTCAACTCAGTAATAATAATAATAAAAATAATAACAATAATAAGGAATT
ATAATCAAATAATAATATAGCTATAATCTATAATTACTATAGTAAAATTACGTATACATA
TATAAANAATTATTATTATCATNTTTTTAAAAATAAATAAATAAANA

>CHH349P.Seq
ATTCAACTCAGTAATAATAATAATAAAAATAATAACAATAATAAGGAATTATAATCAAAT
AATAATATAGCTATAATCTATAATTACTATAGTAAAATTACGTATACATATATAAATAAT
TATTATTATCATTGTTTTTAAAAATAAATAAATAAATAATAAAAAAAAAA----------
ATTCAACTCAGTAATAATAATAATAAAAATAATAACAATAATAAGGAATTATAATCAAAT
AATAATATAGCTATAATCTATAATTACTATAGTAAAATTACGTATACATATATAAANAAT
TATTATTATCATNTTTTTAAAAATAAATAAATAAANA