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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHH347
Library CH
(Link to library)
Clone ID CHH347
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15617-1
Original site URL
Representative seq. ID CHH347P
(Link to Original site)
Representative DNA sequence 
>CHH347 (CHH347Q) /CSM/CH/CHH3-B/CHH347Q.Seq.d/
ATTTTTTTTATTATTATTTTATTACTAACTTAATATCATATTAAGTTTACATTAAAAATT
TAAAAAATAAATAAAAAAATAAAAAATTAAATTAAAAAAAAATAAAAAAAATAAAAAAAA
ATAAAAAAAAAAATAAAAANCTAATAATTAAAAAAATTAAATNTTGNAGTAAAAAAATAA
ATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAA
ATAAATAAATAAATAAATAATAATANCNTGAGTAACTCAAATAATAATANCTCXXXXXXX
XXXAAAATCACTGATTTTGGTTTCGCAAAACGGGTAGAAGACAGAACTTTCACCCTTTGT
GGTACCCCTGAATATTTGGCACCTGAAATCATTCAAAGCAAAGGTCATGGTAAAGCGGTC
GATTGGTGGGCACTTGCTATTNTAATATTTGAAATGTTGGCAGGTTATCCACCTTTNTAT
GATGATGATACCTNTGCAATCTATAATAAAATTTTGGCTGGTAGAATCACTTTTCCATTA
GGTTTTGATGTTGATGNTAAAGATTTAATTAAAAGATTATTAACTGCTGATAGAACTCGT
AAATTGGGTGCTTTAAAGGATGGTGCATTAGATGTCAAAAATCATAGATGGTTTTCTGAT
ATTAATTGGGAAAGATTATATCAGAGAAGAGATAATGGACCATTCATTCCAAAGATTCAA
CATCAAGGTGATTCTTCAAACTTTGAAATGTATGATGAAGAAGAAATGGTTGAAGAGCCT
CTATCTTCAAATTATGTTGATCCATATGCACATCTTTTCAAGGATTTTTAAAAAATAAAA
GATAATAACAAATA
sequence update 2002.10.25
Translated Amino Acid sequence 
iffiiilllt*yhikftlki*kinkkikn*ikkk*kk*kkikkkikx**lkklnxxvkk*
ink*ink*ink*ink*ink*ink*INNNXXSNSNNNX---

---KITDFGFAKRVEDRTFTLCGTPEYLAPEIIQSKGHGKAVDWWALAIXIFEMLAGYPP
XYDDDTXAIYNKILAGRITFPLGFDVDXKDLIKRLLTADRTRKLGALKDGALDVKNHRWF
SDINWERLYQRRDNGPFIPKIQHQGDSSNFEMYDEEEMVEEPLSSNYVDPYAHLFKDF*k
ikdnnk
Translated Amino Acid sequence (All Frames) 
Frame A:
iffiiilllt*yhikftlki*kinkkikn*ikkk*kk*kkikkkikx**lkklnxxvkk*
ink*ink*ink*ink*ink*ink*INNNXXSNSNNNX---

---KITDFGFAKRVEDRTFTLCGTPEYLAPEIIQSKGHGKAVDWWALAIXIFEMLAGYPP
XYDDDTXAIYNKILAGRITFPLGFDVDXKDLIKRLLTADRTRKLGALKDGALDVKNHRWF
SDINWERLYQRRDNGPFIPKIQHQGDSSNFEMYDEEEMVEEPLSSNYVDPYAHLFKDF*k
ikdnnk

Frame B:
fflllfyy*lniilslh*kfkk*ikk*kiklkknkknkkk*kkk*kxnn*kn*xlx*knk
*ink*ink*ink*ink*ink*ink*iiix*vtqiiix---

---kslilvsqng*ktelspfvvplniwhlksfkakvmvkrsigghllx*ylkcwqvihl
xmmmipxqsiikfwlveslfh*vlmlmxki*lkdy*llielvnwvl*rmvh*mskiidgf
liligkdyireeimdhsfqrfnikvilqtlkcmmkkkwlkslylqimlihmhifsrifkk
*kiitn

Frame C:
ffyyyfitnlisy*vyiknlknk*knkkln*kkikkikknkkknkxliikkikxxskkin
k*ink*ink*ink*ink*ink*ink**xxe*lk**xl---

---nh*fwfrktgrrqnfhplwyp*ifgt*nhskqrsw*sgrlvgtcyxni*nvgrlstf
x***ylcnl**nfgw*nhfsirf*c*x*rfn*kiinc**ns*igcfkgwcircqks*mvf
*y*lgkiisekr*wtihskdstsr*ffkl*nv**rrng*rasifklc*sictsfqgflkn
kr**qi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHH347 (CHH347Q) /CSM/CH/CHH3-B/CHH347Q.Seq.d/                       1068   0.0
CHI186 (CHI186Q) /CSM/CH/CHI1-D/CHI186Q.Seq.d/                       1045   0.0
AHM265 (AHM265Q) /CSM/AH/AHM2-C/AHM265Q.Seq.d/                       1045   0.0
SFH701 (SFH701Q) /CSM/SF/SFH7-A/SFH701Q.Seq.d/                       1039   0.0
CHP121 (CHP121Q) /CSM/CH/CHP1-A/CHP121Q.Seq.d/                       1011   0.0
CHL103 (CHL103Q) /CSM/CH/CHL1-A/CHL103Q.Seq.d/                       1009   0.0
CHM664 (CHM664Q) /CSM/CH/CHM6-C/CHM664Q.Seq.d/                        916   0.0
AFI637 (AFI637Q) /CSM/AF/AFI6-B/AFI637Q.Seq.d/                        862   0.0
CHO356 (CHO356Q) /CSM/CH/CHO3-C/CHO356Q.Seq.d/                        660   0.0
CHJ469 (CHJ469Q) /CSM/CH/CHJ4-C/CHJ469Q.Seq.d/                        658   0.0
own update 2002. 9.29
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M38703|M38703.1 Dictyostelium discoideum protein kinase (Dd GPK2) gene, exons 1 and 2.   587   0.0    2
CD167015|CD167015.1 MM1-0008P-R014-B11-U.B MM1-0008 Schistosoma mansoni cDNA clone MM1-0008P-R014-B11.B, mRNA sequence.    72   2e-08  1
CV511301|CV511301.1 kc39e08.y1 Xiphinema index CSEQDA01 Xiphinema index cDNA 5' similar to SW:KAPC_CAEEL P21137 CAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT ;contains element MSR1 repetitive element ;, mRNA sequence.    48   4e-06  2
CR354088|CR354088.1 Gallus gallus finished cDNA, clone ChEST371o8.    62   2e-05  1
BG226585|BG226585.1 kp91a12.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to WP:ZK909.2B CE15475 ;, mRNA sequence.    40   5e-05  3
BZ391655|BZ391655.1 EINEA15TF EI_10_12_KB Entamoeba invadens genomic clone EINEA15, DNA sequence.    42   2e-04  2
M38794|M38794.1 Dictyostelium discoideum protein kinase (Dd GPK1) mRNA, 3' end.    40   2e-04  2
BU401108|BU401108.1 603482232F1 CSEQCHN59 Gallus gallus cDNA clone ChEST371o8 5', mRNA sequence.    58   3e-04  1
BI451474|BI451474.1 kx24h05.y1 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to TR:O18311 O18311 KIN-1 PROTEIN. [1] ;, mRNA sequence.    32   3e-04  3
AJ271674|AJ271674.1 Apis mellifera carnica partial mRNA for putative cAMP-dependent  protein kinase catalytic subunit (co gene).    40   9e-04  2
dna update 2004.11.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

JQ1150(JQ1150)protein kinase (EC 2.7.1.37) cAMP-dependent, catal...   318   1e-85
(P34099) RecName: Full=cAMP-dependent protein kinase catalytic s...   318   1e-85
(P51817) RecName: Full=Serine/threonine-protein kinase PRKX;    ...   209   7e-53
BX322647_6(BX322647|pid:none) Zebrafish DNA sequence from clone ...   208   1e-52
BC091203_1(BC091203|pid:none) Rattus norvegicus protein kinase, ...   203   5e-51
AY728014_1(AY728014|pid:none) Pan troglodytes PRKY mRNA, partial...   201   2e-50
AK149937_1(AK149937|pid:none) Mus musculus bone marrow macrophag...   200   4e-50
F31751(F31751) protein kinase catalytic chain homolog DC2 - frui...   198   2e-49
AE014296_2746(AE014296|pid:none) Drosophila melanogaster chromos...   198   2e-49
AJ238004_1(AJ238004|pid:none) Mus musculus mRNA for putative PKA...   197   3e-49
protein update 2009. 4. 1
PSORT 

 psg: 0.59  gvh: 0.33  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 20.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal

>> prediction for CHH347 is cyt
5' end seq. ID CHH347F
5' end seq. 
>CHH347F.Seq
ATTTTTTTTATTATTATTTTATTACTAACTTAATATCATATTAAGTTTACATTAAAAATT
TAAAAAATAAATAAAAAAATAAAAAATTAAATTAAAAAAAAATAAAAAAAATAAAAAAAA
ATAAAAAAAAAAATAAAAANCTAATAATTAAAAAAATTAAATNTTGNAGTAAAAAAATAA
ATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAA
ATAAATAAATAAATAAATAATAATANCNTGAGTAACTCAAATAATAATANCTCNNNNNNN
NNN
Length of 5' end seq. 303
3' end seq. ID CHH347Z
3' end seq. 
>CHH347Z.Seq
NNNNNNNNNNAAAATCACTGATTTTGGTTTCGCAAAACGGGTAGAAGACAGAACTTTCAC
CCTTTGTGGTACCCCTGAATATTTGGCACCTGAAATCATTCAAAGCAAAGGTCATGGTAA
AGCGGTCGATTGGTGGGCACTTGCTATTNTAATATTTGAAATGTTGGCAGGTTATCCACC
TTTNTATGATGATGATACCTNTGCAATCTATAATAAAATTTTGGCTGGTAGAATCACTTT
TCCATTAGGTTTTGATGTTGATGNTAAAGATTTAATTAAAAGATTATTAACTGCTGATAG
AACTCGTAAATTGGGTGCTTTAAAGGATGGTGCATTAGATGTCAAAAATCATAGATGGTT
TTCTGATATTAATTGGGAAAGATTATATCAGAGAAGAGATAATGGACCATTCATTCCAAA
GATTCAACATCAAGGTGATTCTTCAAACTTTGAAATGTATGATGAAGAAGAAATGGTTGA
AGAGCCTCTATCTTCAAATTATGTTGATCCATATGCACATCTTTTCAAGGATTTTTAAAA
AATAAAAGATAATAACAAATA
Length of 3' end seq. 561
Connected seq. ID CHH347P
Connected seq. 
>CHH347P.Seq
ATTTTTTTTATTATTATTTTATTACTAACTTAATATCATATTAAGTTTACATTAAAAATT
TAAAAAATAAATAAAAAAATAAAAAATTAAATTAAAAAAAAATAAAAAAAATAAAAAAAA
ATAAAAAAAAAAATAAAAANCTAATAATTAAAAAAATTAAATNTTGNAGTAAAAAAATAA
ATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAA
ATAAATAAATAAATAAATAATAATANCNTGAGTAACTCAAATAATAATANCTC-------
---AAAATCACTGATTTTGGTTTCGCAAAACGGGTAGAAGACAGAACTTTCACCCTTTGT
GGTACCCCTGAATATTTGGCACCTGAAATCATTCAAAGCAAAGGTCATGGTAAAGCGGTC
GATTGGTGGGCACTTGCTATTNTAATATTTGAAATGTTGGCAGGTTATCCACCTTTNTAT
GATGATGATACCTNTGCAATCTATAATAAAATTTTGGCTGGTAGAATCACTTTTCCATTA
GGTTTTGATGTTGATGNTAAAGATTTAATTAAAAGATTATTAACTGCTGATAGAACTCGT
AAATTGGGTGCTTTAAAGGATGGTGCATTAGATGTCAAAAATCATAGATGGTTTTCTGAT
ATTAATTGGGAAAGATTATATCAGAGAAGAGATAATGGACCATTCATTCCAAAGATTCAA
CATCAAGGTGATTCTTCAAACTTTGAAATGTATGATGAAGAAGAAATGGTTGAAGAGCCT
CTATCTTCAAATTATGTTGATCCATATGCACATCTTTTCAAGGATTTTTAAAAAATAAAA
GATAATAACAAATA
Length of connected seq. 844
Full length Seq ID -
Full length Seq. -
Length of full length seq. -