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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHH295
Library CH
(Link to library)
Clone ID CHH295
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHH295P
(Link to Original site)
Representative DNA sequence 
>CHH295 (CHH295Q) /CSM/CH/CHH2-D/CHH295Q.Seq.d/
TTAAAAAAAAATAGAGAATATAGTTATATATATAACACACAAAAAAATTCATATCACATT
ATTGTTTTTCATTAATTTATAAACAATAATATATATATAATAAACACTCTATCATTTAAT
TTTAATAAAAAAAAAAXXXXXXXXXXCTTGATCATCTTAAAATGGGTCGTTCCATATCGT
TCATTTGAGGTTGACAAAGTTGATCCACCATTCATTCTTCCAACCATTATCGCTATGTTC
TTGTCACCAGGTGGTACACCAGATGTTGTCTTCTTCTCTGGTCAAGGTGCTGTTCAAACC
GCTCTCTTATTCTTGGCTCTCATTTCCATTCCAGTTATGTTGGTCATTAAACCATTGTTC
ATGAAGAGATTCCACTTCCAAGAAGTCGAAAGAAAGAAATTAGGTCACCACGAAGAGGAA
CATGATGATGAAGCTCTCTACACTGGTCATCACGGTGAAGAATTTGAAATGGGTGAAGTC
TTTGTTCATCAAGTCATTCATACCATCGAGTTTGTTTTGGGTGCTGTTTCAAATACTGCC
TCTTATCTTCGTTTATGGGCTCTTTCATTGGCTCACTCTGAGTTATCTTCTGTATTTTGG
GAACGTATTCTCATTGGTCAAGTCGAACGTGGTAATCCATTCTTGGCTTTCGTTGGTTTT
GGTGCTTGGTTAGGTGCCTCTGTTGCTGTACTTTTACTTATGGAATCCCTTTCTGCTTTC
TTGCACGCTCTTAGACTTCATTGGGTAGAATTCCAAAATAAATTCTATATTGGTGATGGT
GTTAGATTCATTCCATACAGTGCCACTCGTATTCTTTCTGGTTCGAAGATGATGAATAAA
TCATTTAACTAACTAAATAAATAAATCAATAAATAAATNAATAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
lkknreysyiyntqknsyhiivfh*FINNNIYIINTLSFNFNKKK---

---LIILKWVVPYRSFEVDKVDPPFILPTIIAMFLSPGGTPDVVFFSGQGAVQTALLFLA
LISIPVMLVIKPLFMKRFHFQEVERKKLGHHEEEHDDEALYTGHHGEEFEMGEVFVHQVI
HTIEFVLGAVSNTASYLRLWALSLAHSELSSVFWERILIGQVERGNPFLAFVGFGAWLGA
SVAVLLLMESLSAFLHALRLHWVEFQNKFYIGDGVRFIPYSATRILSGSKMMNKSFN*ln
k*ink*xnk
Translated Amino Acid sequence (All Frames) 
Frame A:
lkknreysyiyntqknsyhiivfh*FINNNIYIINTLSFNFNKKK---

---ldhlkmgrsisfi*g*qs*stihssnhyryvlvtrwytrcclllwsrccsnrslilg
shfhssyvgh*tivheeiplprsrkkeirsprrgt***sslhwssr*ri*ng*slcsssh
syhrvcfgccfkycllssfmgsfigsl*vifcilgtyshwssrtw*silgfrwfwclvrc
lccctftygipfcflars*tslgripk*ilyw*wc*ihsiqchsysfwfedde*ii*ltk
*inq*inx*

Frame B:
*kkieniviyithkkihitllffinl*tiiyi**tlyhlilikkk---

---LIILKWVVPYRSFEVDKVDPPFILPTIIAMFLSPGGTPDVVFFSGQGAVQTALLFLA
LISIPVMLVIKPLFMKRFHFQEVERKKLGHHEEEHDDEALYTGHHGEEFEMGEVFVHQVI
HTIEFVLGAVSNTASYLRLWALSLAHSELSSVFWERILIGQVERGNPFLAFVGFGAWLGA
SVAVLLLMESLSAFLHALRLHWVEFQNKFYIGDGVRFIPYSATRILSGSKMMNKSFN*ln
k*ink*xnk

Frame C:
kkk*ri*lyi*htkkfishycfsliykq*yiynkhsii*f**kk---

---*ss*ngsfhivhlrltklihhsffqplslcschqvvhqmlssslvkvlfkplsyswl
sfpfqlcwslnhcs*rdstskkskern*vttkrnmmmklstlvitvknlkwvkslfiksf
ipsslfwvlfqilplifvyglfhwltlsyllyfgnvfslvksnvvihswlslvlvlg*vp
lllyfylwnpfllsctlldfig*nskinsilvmvldsfhtvplvfflvrr**inhltn*i
nksinkxik
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHH295 (CHH295Q) /CSM/CH/CHH2-D/CHH295Q.Seq.d/                       1402   0.0
CHF322 (CHF322Q) /CSM/CH/CHF3-A/CHF322Q.Seq.d/                       1382   0.0
CHR818 (CHR818Q) /CSM/CH/CHR8-A/CHR818Q.Seq.d/                       1368   0.0
CHR349 (CHR349Q) /CSM/CH/CHR3-C/CHR349Q.Seq.d/                       1362   0.0
AHB764 (AHB764Q) /CSM/AH/AHB7-C/AHB764Q.Seq.d/                       1350   0.0
SHJ790 (SHJ790Q) /CSM/SH/SHJ7-D/SHJ790Q.Seq.d/                       1340   0.0
VHN293 (VHN293Q) /CSM/VH/VHN2-D/VHN293Q.Seq.d/                       1338   0.0
CHO859 (CHO859Q) /CSM/CH/CHO8-C/CHO859Q.Seq.d/                       1336   0.0
CHG593 (CHG593Q) /CSM/CH/CHG5-D/CHG593Q.Seq.d/                       1334   0.0
AHO215 (AHO215Q) /CSM/AH/AHO2-A/AHO215Q.Seq.d/                       1330   0.0
own update 2002. 9.29
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U38803|U38803.1 Dictyostelium discoideum vacuolar proton ATPase 100-kDa subunit (vatM) mRNA, complete cds.  1336   0.0    2
BF272276|BF272276.2 GA__Eb0014G21f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0014G21f, mRNA sequence.    72   1e-13  2
BU012351|BU012351.1 QGJ1L02.yg.ab1 QG_EFGHJ lettuce serriola Lactuca sativa cDNA clone QGJ1L02, mRNA sequence.    80   2e-11  2
BQ853466|BQ853466.1 QGB20J11.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB20J11, mRNA sequence.    80   7e-11  1
AC137668|AC137668.18 Medicago truncatula clone mth2-5f8, complete sequence.    52   5e-09  6
CV164410|CV164410.1 rsmsxl_003361.y1.scf cDNA Library of Salvia miltiorrhiza Salvia miltiorrhiza cDNA 5', mRNA sequence.    54   6e-09  3
CV172465|CV172465.1 rsmsxlre_008717.z1.scf cDNA Library of Salvia miltiorrhiza Salvia miltiorrhiza cDNA 5', mRNA sequence.    54   1e-08  3
BQ403487|BQ403487.1 GA__Ed0059H07f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0059H07f, mRNA sequence.    72   2e-08  1
CO121599|CO121599.1 GR__Eb02N16.r GR__Eb Gossypium raimondii cDNA clone GR__Eb02N16 3', mRNA sequence.    72   2e-08  1
CO099107|CO099107.1 GR__Ea23M21.f GR__Ea Gossypium raimondii cDNA clone GR__Ea23M21 5', mRNA sequence.    72   2e-08  1
dna update 2004.11.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54E04) RecName: Full=Vacuolar proton translocating ATPase 100 ...   451   e-125
U38803_1(U38803|pid:none) Dictyostelium discoideum vacuolar prot...   451   e-125
AC093568_14(AC093568|pid:none) Oryza sativa chromosome 10 clone ...   210   6e-53
CP000588_396(CP000588|pid:none) Ostreococcus lucimarinus CCE9901...   206   8e-52
AK101151_1(AK101151|pid:none) Oryza sativa Japonica Group cDNA c...   204   4e-51
AL035679_18(AL035679|pid:none) Arabidopsis thaliana DNA chromoso...   201   2e-50
AK227321_1(AK227321|pid:none) Arabidopsis thaliana mRNA for hypo...   201   2e-50
AK230210_1(AK230210|pid:none) Arabidopsis thaliana mRNA for hypo...   201   3e-50
CR954208_391(CR954208|pid:none) Ostreococcus tauri strain OTTH05...   201   3e-50
AM494960_175(AM494960|pid:none) Leishmania braziliensis chromoso...   199   1e-49
protein update 2009. 4. 1
PSORT 

 psg: 0.85  gvh: 0.49  alm: 0.18  top: 0.77  tms: 0.20  mit: 0.35  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 20.0 %: plasma membrane
	 12.0 %: nuclear
	 12.0 %: vacuolar
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for CHH295 is end
5' end seq. ID CHH295F
5' end seq. 
>CHH295F.Seq
TTAAAAAAAAATAGAGAATATAGTTATATATATAACACACAAAAAAATTCATATCACATT
ATTGTTTTTCATTAATTTATAAACAATAATATATATATAATAAACACTCTATCATTTAAT
TTTAATAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 146
3' end seq. ID CHH295Z
3' end seq. 
>CHH295Z.Seq
NNNNNNNNNNCTTGATCATCTTAAAATGGGTCGTTCCATATCGTTCATTTGAGGTTGACA
AAGTTGATCCACCATTCATTCTTCCAACCATTATCGCTATGTTCTTGTCACCAGGTGGTA
CACCAGATGTTGTCTTCTTCTCTGGTCAAGGTGCTGTTCAAACCGCTCTCTTATTCTTGG
CTCTCATTTCCATTCCAGTTATGTTGGTCATTAAACCATTGTTCATGAAGAGATTCCACT
TCCAAGAAGTCGAAAGAAAGAAATTAGGTCACCACGAAGAGGAACATGATGATGAAGCTC
TCTACACTGGTCATCACGGTGAAGAATTTGAAATGGGTGAAGTCTTTGTTCATCAAGTCA
TTCATACCATCGAGTTTGTTTTGGGTGCTGTTTCAAATACTGCCTCTTATCTTCGTTTAT
GGGCTCTTTCATTGGCTCACTCTGAGTTATCTTCTGTATTTTGGGAACGTATTCTCATTG
GTCAAGTCGAACGTGGTAATCCATTCTTGGCTTTCGTTGGTTTTGGTGCTTGGTTAGGTG
CCTCTGTTGCTGTACTTTTACTTATGGAATCCCTTTCTGCTTTCTTGCACGCTCTTAGAC
TTCATTGGGTAGAATTCCAAAATAAATTCTATATTGGTGATGGTGTTAGATTCATTCCAT
ACAGTGCCACTCGTATTCTTTCTGGTTCGAAGATGATGAATAAATCATTTAACTAACTAA
ATAAATAAATCAATAAATAAATNAATAAAA
Length of 3' end seq. 750
Connected seq. ID CHH295P
Connected seq. 
>CHH295P.Seq
TTAAAAAAAAATAGAGAATATAGTTATATATATAACACACAAAAAAATTCATATCACATT
ATTGTTTTTCATTAATTTATAAACAATAATATATATATAATAAACACTCTATCATTTAAT
TTTAATAAAAAAAAAA----------CTTGATCATCTTAAAATGGGTCGTTCCATATCGT
TCATTTGAGGTTGACAAAGTTGATCCACCATTCATTCTTCCAACCATTATCGCTATGTTC
TTGTCACCAGGTGGTACACCAGATGTTGTCTTCTTCTCTGGTCAAGGTGCTGTTCAAACC
GCTCTCTTATTCTTGGCTCTCATTTCCATTCCAGTTATGTTGGTCATTAAACCATTGTTC
ATGAAGAGATTCCACTTCCAAGAAGTCGAAAGAAAGAAATTAGGTCACCACGAAGAGGAA
CATGATGATGAAGCTCTCTACACTGGTCATCACGGTGAAGAATTTGAAATGGGTGAAGTC
TTTGTTCATCAAGTCATTCATACCATCGAGTTTGTTTTGGGTGCTGTTTCAAATACTGCC
TCTTATCTTCGTTTATGGGCTCTTTCATTGGCTCACTCTGAGTTATCTTCTGTATTTTGG
GAACGTATTCTCATTGGTCAAGTCGAACGTGGTAATCCATTCTTGGCTTTCGTTGGTTTT
GGTGCTTGGTTAGGTGCCTCTGTTGCTGTACTTTTACTTATGGAATCCCTTTCTGCTTTC
TTGCACGCTCTTAGACTTCATTGGGTAGAATTCCAAAATAAATTCTATATTGGTGATGGT
GTTAGATTCATTCCATACAGTGCCACTCGTATTCTTTCTGGTTCGAAGATGATGAATAAA
TCATTTAACTAACTAAATAAATAAATCAATAAATAAATNAATAAAA
Length of connected seq. 876
Full length Seq ID -
Full length Seq. -
Length of full length seq. -