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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHH261
Library CH
(Link to library)
Clone ID CHH261
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11141-1
Original site URL
Representative seq. ID CHH261P
(Link to Original site)
Representative DNA sequence 
>CHH261 (CHH261Q) /CSM/CH/CHH2-C/CHH261Q.Seq.d/
AATAATAATAATAATACTACTAATAATATTGCTAACAACAATAATTCCAATAACATCAAT
AATAATAATGAAGTTAATAATAGTAATATAAATAATAATATAAATAATGGTATAAATAAT
GATATAGATAGAGGTGGTGAAAAGAAAGCAAATAAATTAATTGCAAAAACAACAAAGAAA
TTTAATAAAGATATGACAGCATATACAAGTGGTAAATTTTTTGAACTTTGGAGAAATCAA
GTTGTACGTGATAAAATATTAGGTTATGTTAGAATTCATAATTTACATTATGATAAGAGA
GTTTTTAAATGTATAGATTTAAATAATTGTATTGATAACGGTGCAGATTTACAACAACAA
CATAATTGTCATAGAGTTCATAATCATTATCATCAAGATCTTGGTCATAATTATTTTGGT
AAAGTTTCTCGTGGTATCGTCTCATTATCAGATTATAAATATTATGGTTATTTAAGATCT
GTTCATTTAATTGGTTATGAACAACATGAGGAGGAGTTAATTAAGACAATAAAGTCATTG
CCGGTGGGTGTGAGCACATTGGAGTTGTCAGGACACTTGAATAAAATTATATTTAAGGAA
GGCTCTCTCCXXXXXXXXXXGCTTTTGTTCGTTCTTTCATTGACTCTTATGAAATTGTTG
ATGAGATATTTGTTGAACAACAAGCTCAATACGNTCAACAACAATTATTACAAAATGAAC
AAGCATTACAAGCTCAAAAACAATTAGAAATACAACAACAAGTTGCTCAACAAAGATTAC
AACAATTAAAACAACAAAAACAACAACAACAACAACAACAAGATAATGAACAACAATTAG
ATCATTCAATTGAAAATAATGATGGTAGTATACAAGATGACCATGAACATGAACTTGAGG
AAGAACAAGAAAATGAAGAAGAAGAAGAAGATACAAATAATCACCAACATCCATTTTTAC
AAGAAGCAATTAATCATAATCAACAACTACAACAAAAACAACAGGAAAAATATTTATATA
GTAGTAATAATAGTAATAATTATAATTATAATAATAATAGTAATAATAATAATAATAATA
ATTCAAATGAAGAAGATGATGAAGAAGAGGATTTAATTCAACCAATAATTTCAAAAGAAT
GGTTACCACCATCAATTCATACATTAATAATTCGTGGTGAACCAACTATTCAATTACCAC
TTCCTGAATCTTTAACAAATATTCATATTGAAAGTAAAAATCAAAGTATTTTACATAATA
TTCCTTTAATGGAGAAAATTTCAAAATTGGTTAGAGTTTT
sequence update 2002.10.25
Translated Amino Acid sequence 
NNNNNTTNNIANNNNSNNINNNNEVNNSNINNNINNGINNDIDRGGEKKANKLIAKTTKK
FNKDMTAYTSGKFFELWRNQVVRDKILGYVRIHNLHYDKRVFKCIDLNNCIDNGADLQQQ
HNCHRVHNHYHQDLGHNYFGKVSRGIVSLSDYKYYGYLRSVHLIGYEQHEEELIKTIKSL
PVGVSTLELSGHLNKIIFKEGSL---

---AFVRSFIDSYEIVDEIFVEQQAQYXQQQLLQNEQALQAQKQLEIQQQVAQQRLQQLK
QQKQQQQQQQDNEQQLDHSIENNDGSIQDDHEHELEEEQENEEEEEDTNNHQHPFLQEAI
NHNQQLQQKQQEKYLYSSNNSNNYNYNNNSNNNNNNNSNEEDDEEEDLIQPIISKEWLPP
SIHTLIIRGEPTIQLPLPESLTNIHIESKNQSILHNIPLMEKISKLVRV
Translated Amino Acid sequence (All Frames) 
Frame A:
NNNNNTTNNIANNNNSNNINNNNEVNNSNINNNINNGINNDIDRGGEKKANKLIAKTTKK
FNKDMTAYTSGKFFELWRNQVVRDKILGYVRIHNLHYDKRVFKCIDLNNCIDNGADLQQQ
HNCHRVHNHYHQDLGHNYFGKVSRGIVSLSDYKYYGYLRSVHLIGYEQHEEELIKTIKSL
PVGVSTLELSGHLNKIIFKEGSL---

---AFVRSFIDSYEIVDEIFVEQQAQYXQQQLLQNEQALQAQKQLEIQQQVAQQRLQQLK
QQKQQQQQQQDNEQQLDHSIENNDGSIQDDHEHELEEEQENEEEEEDTNNHQHPFLQEAI
NHNQQLQQKQQEKYLYSSNNSNNYNYNNNSNNNNNNNSNEEDDEEEDLIQPIISKEWLPP
SIHTLIIRGEPTIQLPLPESLTNIHIESKNQSILHNIPLMEKISKLVRV

Frame B:
iiiiilliillttiipitsiiimkliivi*iii*imv*imi*ievvkrkqin*lqkqqrn
liki*qhiqvvnflnfgeiklyviky*vmlefiiyimireflnv*i*iivlitvqiynnn
iiviefiiiiikilviiilvkflvvsshyqiinimvi*dlfi*lvmnnmrrs*lrq*shc
rwv*ahwscqdt*iklylrkals---

---llfvlsltlmkllmryllnnklntxnnnyykmnkhyklknn*kynnkllnkdynn*n
nknnnnnnnkimnnn*iiqlkimmvvykmtmnmnlrknkkmkkkkkiqiitnihfykkql
iiinnynknnrkniyivviiviiiiiiiiviiiiiiiqmkkmmkkri*fnq*fqkngyhh
qfih**fvvnqlfnyhflnl*qifilkvkikvfyiifl*wrkfqnwlef

Frame C:
****yy**yc*qq*fq*hq****s****yk**yk*wyk**yr*rw*kesk*incknnkei
**rydsiykw*if*tlekssct**nirlc*ns*ftl**esf*myrfk*ly**rcrftttt
*ls*ss*slssrsws*lfw*sfswyrliirl*ilwlfkicsfnwl*tt*ggvn*dnkvia
ggcehigvvrtle*nyi*grls---

---fcsffh*ll*nc**dic*ttssirsttiitk*tsitssktirntttscstkittikt
tktttttttr**ttirsfn*k**w*ytr*p*t*t*grtrk*rrrrryk*sptsiftrsn*
s*sttttkttgkifi*******l*l***********fk*rr**rrgfnstnnfkrmvtti
nsyinnsw*tnysitts*ifnkysy*k*kskyft*ysfngenfkig*sf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHH261 (CHH261Q) /CSM/CH/CHH2-C/CHH261Q.Seq.d/                       1144   0.0
SHF646 (SHF646Q) /CSM/SH/SHF6-B/SHF646Q.Seq.d/                        678   0.0
AHQ254 (AHQ254Q) /CSM/AH/AHQ2-C/AHQ254Q.Seq.d/                        672   0.0
AHA596 (AHA596Q) /CSM/AH/AHA5-D/AHA596Q.Seq.d/                        591   e-167
CHO169 (CHO169Q) /CSM/CH/CHO1-C/CHO169Q.Seq.d/                        551   e-156
VHD627 (VHD627Q) /CSM/VH/VHD6-B/VHD627Q.Seq.d/                        496   e-139
VSG317 (VSG317Q) /CSM/VS/VSG3-A/VSG317Q.Seq.d/                         44   0.005
VSA875 (VSA875Q) /CSM/VS/VSA8-D/VSA875Q.Seq.d/                         44   0.005
VSA687 (VSA687Q) /CSM/VS/VSA6-D/VSA687Q.Seq.d/                         44   0.005
SHK316 (SHK316Q) /CSM/SH/SHK3-A/SHK316Q.Seq.d/                         44   0.005
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.   959   0.0    9
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    40   5e-16  27
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    38   2e-12  27
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    38   5e-11  25
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    36   3e-09  17
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    40   1e-08  18
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    42   2e-08  20
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    40   4e-08  21
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    38   6e-08  14
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence.    52   6e-08  15
dna update 2004.11.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86AH2) RecName: Full=FNIP repeat-containing protein DDB_G02719...   342   2e-92
AC117267_6(AC117267|pid:none) Dictyostelium discoideum chromosom...    37   1.9
AM286690_1195(AM286690|pid:none) Alcanivorax borkumensis SK2, co...    36   3.3
AC116305_136(AC116305|pid:none) Dictyostelium discoideum chromos...    35   4.3
EF100424_1(EF100424|pid:none) Plasmodium chabaudi strain AS-ART ...    35   5.6
protein update 2009. 4. 1
PSORT 

 psg: 0.63  gvh: -0.07  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 24.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: mitochondrial

>> prediction for CHH261 is nuc
5' end seq. ID CHH261F
5' end seq. 
>CHH261F.Seq
AATAATAATAATAATACTACTAATAATATTGCTAACAACAATAATTCCAATAACATCAAT
AATAATAATGAAGTTAATAATAGTAATATAAATAATAATATAAATAATGGTATAAATAAT
GATATAGATAGAGGTGGTGAAAAGAAAGCAAATAAATTAATTGCAAAAACAACAAAGAAA
TTTAATAAAGATATGACAGCATATACAAGTGGTAAATTTTTTGAACTTTGGAGAAATCAA
GTTGTACGTGATAAAATATTAGGTTATGTTAGAATTCATAATTTACATTATGATAAGAGA
GTTTTTAAATGTATAGATTTAAATAATTGTATTGATAACGGTGCAGATTTACAACAACAA
CATAATTGTCATAGAGTTCATAATCATTATCATCAAGATCTTGGTCATAATTATTTTGGT
AAAGTTTCTCGTGGTATCGTCTCATTATCAGATTATAAATATTATGGTTATTTAAGATCT
GTTCATTTAATTGGTTATGAACAACATGAGGAGGAGTTAATTAAGACAATAAAGTCATTG
CCGGTGGGTGTGAGCACATTGGAGTTGTCAGGACACTTGAATAAAATTATATTTAAGGAA
GGCTCTCTCCNNNNNNNNNN
Length of 5' end seq. 620
3' end seq. ID CHH261Z
3' end seq. 
>CHH261Z.Seq
NNNNNNNNNNGCTTTTGTTCGTTCTTTCATTGACTCTTATGAAATTGTTGATGAGATATT
TGTTGAACAACAAGCTCAATACGNTCAACAACAATTATTACAAAATGAACAAGCATTACA
AGCTCAAAAACAATTAGAAATACAACAACAAGTTGCTCAACAAAGATTACAACAATTAAA
ACAACAAAAACAACAACAACAACAACAACAAGATAATGAACAACAATTAGATCATTCAAT
TGAAAATAATGATGGTAGTATACAAGATGACCATGAACATGAACTTGAGGAAGAACAAGA
AAATGAAGAAGAAGAAGAAGATACAAATAATCACCAACATCCATTTTTACAAGAAGCAAT
TAATCATAATCAACAACTACAACAAAAACAACAGGAAAAATATTTATATAGTAGTAATAA
TAGTAATAATTATAATTATAATAATAATAGTAATAATAATAATAATAATAATTCAAATGA
AGAAGATGATGAAGAAGAGGATTTAATTCAACCAATAATTTCAAAAGAATGGTTACCACC
ATCAATTCATACATTAATAATTCGTGGTGAACCAACTATTCAATTACCACTTCCTGAATC
TTTAACAAATATTCATATTGAAAGTAAAAATCAAAGTATTTTACATAATATTCCTTTAAT
GGAGAAAATTTCAAAATTGGTTAGAGTTTT
Length of 3' end seq. 690
Connected seq. ID CHH261P
Connected seq. 
>CHH261P.Seq
AATAATAATAATAATACTACTAATAATATTGCTAACAACAATAATTCCAATAACATCAAT
AATAATAATGAAGTTAATAATAGTAATATAAATAATAATATAAATAATGGTATAAATAAT
GATATAGATAGAGGTGGTGAAAAGAAAGCAAATAAATTAATTGCAAAAACAACAAAGAAA
TTTAATAAAGATATGACAGCATATACAAGTGGTAAATTTTTTGAACTTTGGAGAAATCAA
GTTGTACGTGATAAAATATTAGGTTATGTTAGAATTCATAATTTACATTATGATAAGAGA
GTTTTTAAATGTATAGATTTAAATAATTGTATTGATAACGGTGCAGATTTACAACAACAA
CATAATTGTCATAGAGTTCATAATCATTATCATCAAGATCTTGGTCATAATTATTTTGGT
AAAGTTTCTCGTGGTATCGTCTCATTATCAGATTATAAATATTATGGTTATTTAAGATCT
GTTCATTTAATTGGTTATGAACAACATGAGGAGGAGTTAATTAAGACAATAAAGTCATTG
CCGGTGGGTGTGAGCACATTGGAGTTGTCAGGACACTTGAATAAAATTATATTTAAGGAA
GGCTCTCTCC----------GCTTTTGTTCGTTCTTTCATTGACTCTTATGAAATTGTTG
ATGAGATATTTGTTGAACAACAAGCTCAATACGNTCAACAACAATTATTACAAAATGAAC
AAGCATTACAAGCTCAAAAACAATTAGAAATACAACAACAAGTTGCTCAACAAAGATTAC
AACAATTAAAACAACAAAAACAACAACAACAACAACAACAAGATAATGAACAACAATTAG
ATCATTCAATTGAAAATAATGATGGTAGTATACAAGATGACCATGAACATGAACTTGAGG
AAGAACAAGAAAATGAAGAAGAAGAAGAAGATACAAATAATCACCAACATCCATTTTTAC
AAGAAGCAATTAATCATAATCAACAACTACAACAAAAACAACAGGAAAAATATTTATATA
GTAGTAATAATAGTAATAATTATAATTATAATAATAATAGTAATAATAATAATAATAATA
ATTCAAATGAAGAAGATGATGAAGAAGAGGATTTAATTCAACCAATAATTTCAAAAGAAT
GGTTACCACCATCAATTCATACATTAATAATTCGTGGTGAACCAACTATTCAATTACCAC
TTCCTGAATCTTTAACAAATATTCATATTGAAAGTAAAAATCAAAGTATTTTACATAATA
TTCCTTTAATGGAGAAAATTTCAAAATTGGTTAGAGTTTT
Length of connected seq. 1290
Full length Seq ID -
Full length Seq. -
Length of full length seq. -