CHH241
Library CH
(Link to library)
Clone ID CHH241
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14325-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHH241 (CHH241Q) /CSM/CH/CHH2-B/CHH241Q.Seq.d/
CATTTGTCTCATCAAATCCTTCAATTGTAAACTTGAGTGGTCGTGAAGATTTAGTCGGNG
AATNGGTTGCATTAAAAGTTGGTGAGGCTACAATCAAAGCCATCGCTCAAATCGTCGATC
CAATCACTGGTAAANAANCTATAATTGGAGAAGATAAATTAATGGTTTACGTTAANAATA
TGACTGGTATTAGAATTCATAGTAGTATTAATAAGATCCTCNTTGGTAATGAANCCAAAT
TACGTGTNGTTGGTGCAAATGGNGAAACTCCATTCACATATGGNAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
FVSSNPSIVNLSGREDLVGEXVALKVGEATIKAIAQIVDPITGKXXIIGEDKLMVYVXNM
TGIRIHSSINKILXGNEXKLRVVGANGETPFTYG---


Translated Amino Acid sequence (All Frames)
Frame A:
hlshqilql*t*vvvki*sxnxlh*klvrlqskpslkssiqslvxxl*lekin*wftlxi
*lvlefivvlirsslvmxpnyvxlvqmxklhshm---


Frame B:
icliksfncklews*rfsrxxgciksw*gynqshrsnrrsnhw*xxynwrr*inglr*xy
dwy*ns**y**dpxw**xqitcxwckwxnsihiw---


Frame C:
FVSSNPSIVNLSGREDLVGEXVALKVGEATIKAIAQIVDPITGKXXIIGEDKLMVYVXNM
TGIRIHSSINKILXGNEXKLRVVGANGETPFTYG---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHH241 (CHH241Q) /CSM/CH/CHH2-B/CHH241Q.Seq.d/ 507 e-143
VHA680 (VHA680Q) /CSM/VH/VHA6-D/VHA680Q.Seq.d/ 492 e-138
VHP746 (VHP746Q) /CSM/VH/VHP7-B/VHP746Q.Seq.d/ 34 1.1
VHO788 (VHO788Q) /CSM/VH/VHO7-D/VHO788Q.Seq.d/ 34 1.1
VHO147 (VHO147Q) /CSM/VH/VHO1-B/VHO147Q.Seq.d/ 34 1.1
VHN846 (VHN846Q) /CSM/VH/VHN8-B/VHN846Q.Seq.d/ 34 1.1
VHL625 (VHL625Q) /CSM/VH/VHL6-B/VHL625Q.Seq.d/ 34 1.1
VHL219 (VHL219Q) /CSM/VH/VHL2-A/VHL219Q.Seq.d/ 34 1.1
VHH250 (VHH250Q) /CSM/VH/VHH2-C/VHH250Q.Seq.d/ 34 1.1
VHG483 (VHG483Q) /CSM/VH/VHG4-D/VHG483Q.Seq.d/ 34 1.1

own update 2004. 7.20
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC013375|AC013375.7 Homo sapiens clone RP11-12I7, LOW-PASS SEQUENCE SAMPLING. 36 5.9 3
CO979418|CO979418.1 GM89004B2D03.r1 Gm-r1089 Glycine max cDNA clone Gm-r1089-1326 3, mRNA sequence. 40 19 1
AC109393|AC109393.4 Rattus norvegicus clone CH230-82N1, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces. 40 19 1
BG237258|BG237258.1 sab05b10.y1 Gm-c1071 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1071-476 5', mRNA sequence. 40 19 1
AC147729|AC147729.2 Oryctolagus cuniculus clone LB1-54I6, WORKING DRAFT SEQUENCE, 6 ordered pieces. 40 19 1
BE803342|BE803342.1 sr55a09.y1 Gm-c1051 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1051-1937 5', mRNA sequence. 40 19 1
AC120720|AC120720.3 Rattus norvegicus clone CH230-118F21, *** SEQUENCING IN PROGRESS ***, 1 ordered piece. 40 19 1
AC147702|AC147702.2 Oryctolagus cuniculus clone LB1-307H15, WORKING DRAFT SEQUENCE, 14 ordered pieces. 40 19 1

dna update 2004.11.10
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q8TEM1) RecName: Full=Nuclear pore membrane glycoprotein 210; ... 49 4e-05
AB384541_1(AB384541|pid:none) Synthetic construct DNA, clone: pF... 49 4e-05
(P11654) RecName: Full=Nuclear pore membrane glycoprotein 210; ... 47 3e-04
BC052468_1(BC052468|pid:none) Mus musculus nucleoporin 210, mRNA... 45 6e-04
AF113751_1(AF113751|pid:none) Mus musculus nuclear pore membrane... 45 6e-04
AK173056_1(AK173056|pid:none) Mus musculus mRNA for mKIAA0906 pr... 45 6e-04
(Q9QY81) RecName: Full=Nuclear pore membrane glycoprotein 210; ... 45 6e-04
(Q9D2F7) RecName: Full=Nuclear pore membrane glycoprotein 210-li... 42 0.008
AL833964_1(AL833964|pid:none) Homo sapiens mRNA; cDNA DKFZp434C1... 40 0.018
AK125924_1(AK125924|pid:none) Homo sapiens cDNA FLJ43936 fis, cl... 40 0.018
protein update 2009. 4. 1
PSORT

psg: 0.82 gvh: 0.44 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
28.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for CHH241 is cyt

5' end seq. ID CHH241F
5' end seq.
>CHH241F.Seq
CATTTGTCTCATCAAATCCTTCAATTGTAAACTTGAGTGGTCGTGAAGATTTAGTCGGNG
AATNGGTTGCATTAAAAGTTGGTGAGGCTACAATCAAAGCCATCGCTCAAATCGTCGATC
CAATCACTGGTAAANAANCTATAATTGGAGAAGATAAATTAATGGTTTACGTTAANAATA
TGACTGGTATTAGAATTCATAGTAGTATTAATAAGATCCTCNTTGGTAATGAANCCAAAT
TACGTGTNGTTGGTGCAAATGGNGAAACTCCATTCACATATGGNANNNNNNNNNN
Length of 5' end seq. 295
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -