NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHH190
Library CH
(Link to library)
Clone ID CHH190
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12984-1|Contig-U16415-1
Original site URL
Representative seq. ID CHH190P
(Link to Original site)
Representative DNA sequence 
>CHH190 (CHH190Q) /CSM/CH/CHH1-D/CHH190Q.Seq.d/
ATAATAACAATCCAATTTTAAAACGTAAAAAAGCTCCAAATAGATTATTTGTAAAAAAAN
CAATTAATGATGATAATTCAGTAGTTACATTAAATCCANANACAANGGATCAATTACAAT
TNTTTANAGGNGACNCACTTTTAATTAANGGTAAAAAGANAANANATNCCGTTTGTNTTG
TATTGTCAAATCCAACCATCGATCCATCAAANATCCGTATGAATAAAGTTGTAAAAAATA
ATCTTCGNGTTAAATTAGGNGACATGATTTCAGTTCACCAATGTTCAAATGTTAAATATG
GCAAACGTNTTCATGNGTTACCAATTGATGATNCCATANAAGGTCTCAGGGGCAATCTNT
TTGATCTTTACCTCAAACCATACTTTTTAAAAGCCTACCGTCCAGTCCGTAAGGGNGACT
TATTTTTAXXXXXXXXXXCTCCATGTGTTTTGTTNTTTGATGAGTTGGATAGTATTGCAC
GTTTTAGAGGTTCATCACAAGGTGATGCTGGTGGTGCTGGTGATAGAGTTATCAATCAAA
TTTTAACTGAAATGGATGGTATGAACGCCAANAAGAACGTTTTCATCATTGGTGNTACCA
ATAGACCAGATATCATCGATCCAGCTATCCTCCGTCCAGGTNGTTTAGATCAACTCATTT
ACATTCCATTACCAGATTTACCATTTNGTGTTGCCATTTTCAAGGNTTGTTTCAATAAAT
CNCCAGTCGCCAAGGATGTAGATTTAGAATTTTTGGGTCAAAANACTCAAGGTTTTTTTG
GTGCAGATTTAACTGAAATTTGTCAACGNGCCTGTAAATTAGCTATTNGTGAATCCATTG
AAAAGGATATTGAATCCNCCAAAGCCCGTCAAGAATTTGGTGATACCAANATGGAANATG
ACTNTGTCGATCCAGTACCAGAAATTANTNGTGATCACTTCCAANAAGCCATGAGATNTG
NTCGTCGTTNTGNATCCGATAATGATATTAGAAAATATGAAAGCTTTGCTCAAACTTTAG
TTCAATCAAGAGGTCTTGGTAANAATTTCAAATTCCCAGATCAANAATCTTCAGGTCAAT
TCA
sequence update 2002.10.25
Translated Amino Acid sequence 
NNNPILKRKKAPNRLFVKKXINDDNSVVTLNPXTXDQLQXFXGDXLLIXGKKXXXXVCXV
LSNPTIDPSXIRMNKVVKNNLRVKLGDMISVHQCSNVKYGKRXHXLPIDDXIXGLRGNLF
DLYLKPYFLKAYRPVRKGDLFL---

---PCVLXFDELDSIARFRGSSQGDAGGAGDRVINQILTEMDGMNAXKNVFIIGXTNRPD
IIDPAILRPGXLDQLIYIPLPDLPFXVAIFKXCFNKSPVAKDVDLEFLGQXTQGFFGADL
TEICQRACKLAIXESIEKDIESXKARQEFGDTXMEXDXVDPVPEIXXDHFQXAMRXXRRX
XSDNDIRKYESFAQTLVQSRGLGXNFKFPDQXSSGQF
Translated Amino Acid sequence (All Frames) 
Frame A:
iitiqf*nvkklqidyl*kxqlmmiiq*lh*ixxqxinynxlxxthf*lxvkrxxxpfvl
ycqiqpsihqxsv*ikl*kiifxln*xt*fqftnvqmlnmanvfmxyqlmxpxkvsgaix
liftsnhtf*kptvqsvrxtyf---

---lhvfcxlmswivlhvlevhhkvmlvvlvielsikf*lkwmv*tpxrtfsslvxpidq
issiqlssvqvv*insftfhyqiyhxvlpfsrxvsinxqsprm*i*nfwvkxlkvflvqi
*lkfvnxpvn*lxvnplkrilnppkpvknlvipxwxmtxsiqyqklxvitsxkp*dxxvv
xxpimilenmkallkl*fnqevlvxisnsqixnlqvns

Frame B:
**qsnfkt*kssk*iickkxn****fssyiksxxxgsitixxrxxtfn*x*kxxxxrlxc
ivksnhrsikxpye*sckk*ssx*irxhdfsspmfkc*iwqtxsxvtn**xhxrsqgqsx
*slpqtilfkslpssp*gxlif---

---smcfvx**vg*yctf*rfitr*cwwcw**syqsnfn*ngwyerqxerfhhwxyq*tr
yhrssyppsrxfrsthlhsitrftixcchfqglfq*ixsrqgcrfrifgskxsrffwcrf
n*nlstxl*isyx*ih*kgy*ixqspsriw*yqxgx*lcrsstrnxx*slpxshexxssx
xir**y*ki*klcsnfssikrsw*xfqiprsxifrsi

Frame C:
NNNPILKRKKAPNRLFVKKXINDDNSVVTLNPXTXDQLQXFXGDXLLIXGKKXXXXVCXV
LSNPTIDPSXIRMNKVVKNNLRVKLGDMISVHQCSNVKYGKRXHXLPIDDXIXGLRGNLF
DLYLKPYFLKAYRPVRKGDLFL---

---PCVLXFDELDSIARFRGSSQGDAGGAGDRVINQILTEMDGMNAXKNVFIIGXTNRPD
IIDPAILRPGXLDQLIYIPLPDLPFXVAIFKXCFNKSPVAKDVDLEFLGQXTQGFFGADL
TEICQRACKLAIXESIEKDIESXKARQEFGDTXMEXDXVDPVPEIXXDHFQXAMRXXRRX
XSDNDIRKYESFAQTLVQSRGLGXNFKFPDQXSSGQF
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHH190 (CHH190Q) /CSM/CH/CHH1-D/CHH190Q.Seq.d/                       1731   0.0
AHE864 (AHE864Q) /CSM/AH/AHE8-C/AHE864Q.Seq.d/                       1074   0.0
AHL112 (AHL112Q) /CSM/AH/AHL1-A/AHL112Q.Seq.d/                       1066   0.0
CHH851 (CHH851Q) /CSM/CH/CHH8-C/CHH851Q.Seq.d/                       1063   0.0
AHH765 (AHH765Q) /CSM/AH/AHH7-C/AHH765Q.Seq.d/                       1063   0.0
VSI623 (VSI623Q) /CSM/VS/VSI6-A/VSI623Q.Seq.d/                       1061   0.0
VHJ302 (VHJ302Q) /CSM/VH/VHJ3-A/VHJ302Q.Seq.d/                       1061   0.0
AFH318 (AFH318Q) /CSM/AF/AFH3-A/AFH318Q.Seq.d/                       1061   0.0
SHJ572 (SHJ572Q) /CSM/SH/SHJ5-C/SHJ572Q.Seq.d/                       1047   0.0
VHP286 (VHP286Q) /CSM/VH/VHP2-D/VHP286Q.Seq.d/                       1045   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U83085|U83085.2 Dictyostelium discoideum cell division cycle protein 48 (cdcD) mRNA, complete cds.   583   0.0    2
CV239703|CV239703.1 WS0233.B21_D16 PT-MB-A-13 Populus balsamifera subsp. trichocarpa cDNA clone WS0233_D16 3', mRNA sequence.    76   2e-29  4
CB814564|CB814564.1 USDA-FP_100042 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-01_D12 5', mRNA sequence.   127   3e-25  2
BI505199|BI505199.1 BB170019B10G02.5 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170019B10G02 5', mRNA sequence.    52   8e-23  6
AL440049|AL440049.1 T7 end of clone BD0AA009F04 of library BD0AA from strain CBS 94 of  Candida tropicalis.   109   2e-22  2
AL440050|AL440050.1 T3 end of clone BD0AA009F04 of library BD0AA from strain CBS 94 of  Candida tropicalis.   103   1e-20  2
BE579889|BE579889.1 kq34a03.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to WP:C41C4.8 CE05402 TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE HOMOLOG 2 ;, mRNA sequence.    60   3e-20  3
CN594822|CN594822.1 TTE00014937 Normalized large Tetrahymena thermophila cDNA, mRNA sequence.   109   1e-19  1
CF588183|CF588183.1 USDA-FP_121400-098 Acyrthosiphon pisum, Pea Aphid Acyrthosiphon pisum cDNA clone WHAP-011_E12 5', mRNA sequence.    94   2e-19  2
AI067901|AI067901.1 EST209588 Schistosoma mansoni, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMNCG50 5' end similar to transitional endoplasmic reticulum ATPase, mRNA sequence.    78   1e-17  3
dna update 2004.11. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U83085_1(U83085|pid:none) Dictyostelium discoideum cell division...   308   2e-82
BC114306_1(BC114306|pid:none) Danio rerio zgc:136908, mRNA (cDNA...   243   8e-63
AK167794_1(AK167794|pid:none) Mus musculus TIB-55 BB88 cDNA, RIK...   239   9e-62
AK083821_1(AK083821|pid:none) Mus musculus 12 days embryo spinal...   239   9e-62
S25197(S25197;S30329) transitional endoplasmic reticulum ATPase ...   239   9e-62
BC122550_1(BC122550|pid:none) Homo sapiens valosin-containing pr...   239   9e-62
AL137377_1(AL137377|pid:none) Homo sapiens mRNA; cDNA DKFZp434K0...   239   9e-62
(P03974) RecName: Full=Transitional endoplasmic reticulum ATPase...   239   9e-62
AK169140_1(AK169140|pid:none) Mus musculus 17 days embryo kidney...   239   9e-62
(P55072) RecName: Full=Transitional endoplasmic reticulum ATPase...   239   9e-62
protein update 2009. 4. 1
PSORT 

 psg: 0.59  gvh: 0.45  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.41  mip: 0.04
 nuc: 0.10  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: mitochondrial
	 16.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for CHH190 is nuc
5' end seq. ID CHH190F
5' end seq. 
>CHH190F.Seq
ATAATAACAATCCAATTTTAAAACGTAAAAAAGCTCCAAATAGATTATTTGTAAAAAAAN
CAATTAATGATGATAATTCAGTAGTTACATTAAATCCANANACAANGGATCAATTACAAT
TNTTTANAGGNGACNCACTTTTAATTAANGGTAAAAAGANAANANATNCCGTTTGTNTTG
TATTGTCAAATCCAACCATCGATCCATCAAANATCCGTATGAATAAAGTTGTAAAAAATA
ATCTTCGNGTTAAATTAGGNGACATGATTTCAGTTCACCAATGTTCAAATGTTAAATATG
GCAAACGTNTTCATGNGTTACCAATTGATGATNCCATANAAGGTCTCAGGGGCAATCTNT
TTGATCTTTACCTCAAACCATACTTTTTAAAAGCCTACCGTCCAGTCCGTAAGGGNGACT
TATTTTTANNNNNNNNNN
Length of 5' end seq. 438
3' end seq. ID CHH190Z
3' end seq. 
>CHH190Z.Seq
NNNNNNNNNNCTCCATGTGTTTTGTTNTTTGATGAGTTGGATAGTATTGCACGTTTTAGA
GGTTCATCACAAGGTGATGCTGGTGGTGCTGGTGATAGAGTTATCAATCAAATTTTAACT
GAAATGGATGGTATGAACGCCAANAAGAACGTTTTCATCATTGGTGNTACCAATAGACCA
GATATCATCGATCCAGCTATCCTCCGTCCAGGTNGTTTAGATCAACTCATTTACATTCCA
TTACCAGATTTACCATTTNGTGTTGCCATTTTCAAGGNTTGTTTCAATAAATCNCCAGTC
GCCAAGGATGTAGATTTAGAATTTTTGGGTCAAAANACTCAAGGTTTTTTTGGTGCAGAT
TTAACTGAAATTTGTCAACGNGCCTGTAAATTAGCTATTNGTGAATCCATTGAAAAGGAT
ATTGAATCCNCCAAAGCCCGTCAAGAATTTGGTGATACCAANATGGAANATGACTNTGTC
GATCCAGTACCAGAAATTANTNGTGATCACTTCCAANAAGCCATGAGATNTGNTCGTCGT
TNTGNATCCGATAATGATATTAGAAAATATGAAAGCTTTGCTCAAACTTTAGTTCAATCA
AGAGGTCTTGGTAANAATTTCAAATTCCCAGATCAANAATCTTCAGGTCAATTCA
Length of 3' end seq. 655
Connected seq. ID CHH190P
Connected seq. 
>CHH190P.Seq
ATAATAACAATCCAATTTTAAAACGTAAAAAAGCTCCAAATAGATTATTTGTAAAAAAAN
CAATTAATGATGATAATTCAGTAGTTACATTAAATCCANANACAANGGATCAATTACAAT
TNTTTANAGGNGACNCACTTTTAATTAANGGTAAAAAGANAANANATNCCGTTTGTNTTG
TATTGTCAAATCCAACCATCGATCCATCAAANATCCGTATGAATAAAGTTGTAAAAAATA
ATCTTCGNGTTAAATTAGGNGACATGATTTCAGTTCACCAATGTTCAAATGTTAAATATG
GCAAACGTNTTCATGNGTTACCAATTGATGATNCCATANAAGGTCTCAGGGGCAATCTNT
TTGATCTTTACCTCAAACCATACTTTTTAAAAGCCTACCGTCCAGTCCGTAAGGGNGACT
TATTTTTA----------CTCCATGTGTTTTGTTNTTTGATGAGTTGGATAGTATTGCAC
GTTTTAGAGGTTCATCACAAGGTGATGCTGGTGGTGCTGGTGATAGAGTTATCAATCAAA
TTTTAACTGAAATGGATGGTATGAACGCCAANAAGAACGTTTTCATCATTGGTGNTACCA
ATAGACCAGATATCATCGATCCAGCTATCCTCCGTCCAGGTNGTTTAGATCAACTCATTT
ACATTCCATTACCAGATTTACCATTTNGTGTTGCCATTTTCAAGGNTTGTTTCAATAAAT
CNCCAGTCGCCAAGGATGTAGATTTAGAATTTTTGGGTCAAAANACTCAAGGTTTTTTTG
GTGCAGATTTAACTGAAATTTGTCAACGNGCCTGTAAATTAGCTATTNGTGAATCCATTG
AAAAGGATATTGAATCCNCCAAAGCCCGTCAAGAATTTGGTGATACCAANATGGAANATG
ACTNTGTCGATCCAGTACCAGAAATTANTNGTGATCACTTCCAANAAGCCATGAGATNTG
NTCGTCGTTNTGNATCCGATAATGATATTAGAAAATATGAAAGCTTTGCTCAAACTTTAG
TTCAATCAAGAGGTCTTGGTAANAATTTCAAATTCCCAGATCAANAATCTTCAGGTCAAT
TCA
Length of connected seq. 1073
Full length Seq ID -
Full length Seq. -
Length of full length seq. -