>CHH178 (CHH178Q) /CSM/CH/CHH1-D/CHH178Q.Seq.d/
ATTATTTAATTTATTATATATTTTTATATATATATATATATTATTTTTTTTTTAATAAAT
NCCAAATTTTTATTTTTTTTATTTTTATTATTATTATTACTTTATTTTTTTTTTTATNAA
AAAATTATTTTTTATNANCATTTNAAAATTTTTTTTTTTTTTTTNNAAAAAAATTTNAAA
XXXXXXXXXX

YLIYYIFLYIYIYYFFFNKXQIFIFFIFIIIITLFFFLXKNYFLXXFXNFFFFFXKKFX-
--

Frame A:
ii*fiiyfyiyiyiifflinxkflfflfllllllyfffyxkiifyxhxkiffffxxknx-
--


Frame B:
lfnllyifiyiyilfff**xpnfyffyfyyyyyfifffxkklffxxixkfffffxkkix-
--


Frame C:
YLIYYIFLYIYIYYFFFNKXQIFIFFIFIIIITLFFFLXKNYFLXXFXNFFFFFXKKFX-
--

 ***** No hits found ******

Lambda     K      H
    1.37    0.711     1.31

Gapped
Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 0
Number of Sequences: 97611
Number of extensions: 0
Number of successful extensions: 0
Number of sequences better than 10.0: 0
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 0
length of query: 190
length of database: 80,480,566
effective HSP length: 17
effective length of query: 173
effective length of database: 78,821,179
effective search space: 13636063967
effective search space used: 13636063967
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)

 ***** No hits found ******

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Hits to DB: 0
Number of Sequences: 39615163
Number of extensions: 0
Number of successful extensions: 0
Number of sequences better than 10.0: 0
length of query: 190
length of database: [,541,754,239
effective HSP length: 22
effective length of query: 168
effective length of database: Z,670,220,653
effective search space: 7168597069704
effective search space used: 7168597069704
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
[blastall] WARNING:  [000.000]  1099631534.dbm.dna: Blast: No valid letters to be indexed on context 0

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.

 ***** No hits found ******

Lambda     K      H
   0.280    0.104    0.253

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 8,048,832

 psg: 0.91  gvh: 0.41  alm: 0.07  top: 0.53  tms: 0.07  mit: 0.37  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 1.59  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: mitochondrial
	 20.0 %: Golgi
	 20.0 %: endoplasmic reticulum
	 16.0 %: nuclear
	 12.0 %: cytoplasmic
	  4.0 %: plasma membrane

>> prediction for CHH178 is mit

>CHH178F.Seq
ATTATTTAATTTATTATATATTTTTATATATATATATATATTATTTTTTTTTTAATAAAT
NCCAAATTTTTATTTTTTTTATTTTTATTATTATTATTACTTTATTTTTTTTTTTATNAA
AAAATTATTTTTTATNANCATTTNAAAATTTTTTTTTTTTTTTTNNAAAAAAATTTNAAA
NNNNNNNNNN