>CHH155 (CHH155Q) /CSM/CH/CHH1-C/CHH155Q.Seq.d/
XXXXXXXXXXAAAATTAACTCTATTCAATTTGAAAAGGATGATGATACCAATCATCATAT
CGATTTCATTACCGCTACCTCAAATTTAAGAGCTACCAACTATGCAATCAGTCCAGCTGA
TAAACATAAGACCAAAGGTATCGCCGGTAAAATCATTCCAGCTTTAGTTACCACTACTGC
CGTAGTTGCTGGTTTCGTTTGTATCGAATTGATTAAAGTTATTCAAAATAAAGCTTTGGA
GAAATATAAGAGCACCTTTATGAATTTAGGTATCCCATTCTTTGGTTTCGTTGAACCAAT
TGCCGCCCCAAAGAACAAAATTCGTGAAGGCTGGACTTGGACACTTTGGGATCGTTTCGA
TGTTGATGGTGATATCACTCTCAAGGAGTTTTTAGATCTCTTTGAAAAGAAACATGGTTT
GGATATTTCAATGCTCTCTTGTAAAGTTACACTTTTATATGCTCTCTTCACTGATAAGAA
AACTAAAGAGGAAAGATTAAAGATGAAAATCTCACAACTCT

---INSIQFEKDDDTNHHIDFITATSNLRATNYAISPADKHKTKGIAGKIIPALVTTTAV
VAGFVCIELIKVIQNKALEKYKSTFMNLGIPFFGFVEPIAAPKNKIREGWTWTLWDRFDV
DGDITLKEFLDLFEKKHGLDISMLSCKVTLLYALFTDKKTKEERLKMKISQL

Frame A:
---kltlfnlkrmmipiiisislplpqi*elptmqsvqlinirpkvspvksfql*lpllp
*llvsfvsn*lklfkiklwrnirapl*i*vshslvslnqlppqrtkfvkaglghfgivsm
lmvislsrsf*islkrnmvwifqcslvklhfymlsslirklkrkd*r*kshns


Frame B:
---n*lysi*kg**yqssyrfhyrylkfksyqlcnqss**t*dqryrr*nhssfsyhycr
scwfrlyrid*sysk*sfgei*ehlyefrypilwfr*tncrpkeqns*rldldtlgsfrc
*w*yhsqgvfrsl*ketwfgyfnall*sytficslh**en*rgkikdenltt


Frame C:
---INSIQFEKDDDTNHHIDFITATSNLRATNYAISPADKHKTKGIAGKIIPALVTTTAV
VAGFVCIELIKVIQNKALEKYKSTFMNLGIPFFGFVEPIAAPKNKIREGWTWTLWDRFDV
DGDITLKEFLDLFEKKHGLDISMLSCKVTLLYALFTDKKTKEERLKMKISQL

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP810 (VHP810Q) /CSM/VH/VHP8-A/VHP810Q.Seq.d/                       1013   0.0
VHP750 (VHP750Q) /CSM/VH/VHP7-C/VHP750Q.Seq.d/                       1013   0.0
VHP246 (VHP246Q) /CSM/VH/VHP2-B/VHP246Q.Seq.d/                       1013   0.0
VHP205 (VHP205Q) /CSM/VH/VHP2-A/VHP205Q.Seq.d/                       1013   0.0
VHO562 (VHO562Q) /CSM/VH/VHO5-C/VHO562Q.Seq.d/                       1013   0.0
VHO106 (VHO106Q) /CSM/VH/VHO1-A/VHO106Q.Seq.d/                       1013   0.0
VHN736 (VHN736Q) /CSM/VH/VHN7-B/VHN736Q.Seq.d/                       1013   0.0
VHN723 (VHN723Q) /CSM/VH/VHN7-A/VHN723Q.Seq.d/                       1013   0.0
VHM894 (VHM894Q) /CSM/VH/VHM8-D/VHM894Q.Seq.d/                       1013   0.0
VHM844 (VHM844Q) /CSM/VH/VHM8-B/VHM844Q.Seq.d/                       1013   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CB933531|CB933531.1 ri31b11.y1 Meloidogyne chitwoodi egg pAMP1 v1 Meloidogyne chitwoodisequence.    64   4e-13  2
AZ930776|AZ930776.1 474.dhz58e03.s1 Saccharomyces unisporus NRRL Y-1556 Saccharomyces unisporus genomic clone 474.dhz58e03.s1, DNA sequence.    68   2e-12  2
BZ303839|BZ303839.1 KD2618.q1 Kluyveromyces delphensis Random Genomic Library Kluyveromyces delphensis genomic clone KD2618, DNA sequence.    48   2e-04  2
AC148293|AC148293.6 Medicago truncatula clone mth2-16c13, complete sequence.    38   0.002  7
BG799138|BG799138.1 fp18f06.y1 zebrafish gridded kidney Danio rerio cDNA clone 4729883 5' similar to SW:UBAX_MOUSE P31253 UBIQUITIN-ACTIVATING ENZYME E1 X ;, mRNA sequence.    34   0.003  3
CK676842|CK676842.1 ZF101-P00009-DEPE-F3_J08 GISZF001_ra Danio rerio cDNA clone IMAGE:7137706 5', mRNA sequence.    34   0.003  3
CN760387|CN760387.1 ID0AAA28BB08RM1 ApMS Acyrthosiphon pisum cDNA clone ID0AAA28BB08 5', mRNA sequence.    34   0.006  3
AL403306|AL403306.1 T3 end of clone AT0AA007G10 of library AT0AA from strain CBS 4311 of Saccharomyces servazzii.    44   0.006  2
CR382122|CR382122.1 Kluyveromyces lactis strain NRRL Y-1140 chromosome B of strain NRRL  Y-1140 of Kluyveromyces lactis.    52   0.009  1
BH146711|BH146711.1 ENTQG78TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    52   0.009  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55C16) RecName: Full=Ubiquitin-like modifier-activating enzyme...   344   8e-94
EF468345_1(EF468345|pid:none) Pisum sativum ubiquitin activating...   212   5e-54
AB035495_1(AB035495|pid:none) Carassius auratus mRNA for ubiquit...   196   2e-49
AE017341_129(AE017341|pid:none) Cryptococcus neoformans var. neo...   195   5e-49
CR382138_755(CR382138|pid:none) Debaryomyces hansenii strain CBS...   195   6e-49
BC047256_1(BC047256|pid:none) Xenopus laevis ubiquitin-like modi...   193   2e-48
AB040073_1(AB040073|pid:none) Xenopus laevis E1 mRNA for ubiquit...   193   2e-48
CP000496_820(CP000496|pid:none) Pichia stipitis CBS 6054 chromos...   192   5e-48
BC064684_1(BC064684|pid:none) Xenopus laevis ubiquitin-like modi...   189   3e-47
CR382122_592(CR382122|pid:none) Kluyveromyces lactis strain NRRL...   189   3e-47

 psg: 0.75  gvh: 0.55  alm: 0.27  top: 0.43  tms: 0.07  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: cytoplasmic
	 24.0 %: nuclear
	 16.0 %: endoplasmic reticulum
	  8.0 %: cytoskeletal
	  8.0 %: Golgi
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for CHH155 is cyt

>CHH155Z.Seq
NNNNNNNNNNAAAATTAACTCTATTCAATTTGAAAAGGATGATGATACCAATCATCATAT
CGATTTCATTACCGCTACCTCAAATTTAAGAGCTACCAACTATGCAATCAGTCCAGCTGA
TAAACATAAGACCAAAGGTATCGCCGGTAAAATCATTCCAGCTTTAGTTACCACTACTGC
CGTAGTTGCTGGTTTCGTTTGTATCGAATTGATTAAAGTTATTCAAAATAAAGCTTTGGA
GAAATATAAGAGCACCTTTATGAATTTAGGTATCCCATTCTTTGGTTTCGTTGAACCAAT
TGCCGCCCCAAAGAACAAAATTCGTGAAGGCTGGACTTGGACACTTTGGGATCGTTTCGA
TGTTGATGGTGATATCACTCTCAAGGAGTTTTTAGATCTCTTTGAAAAGAAACATGGTTT
GGATATTTCAATGCTCTCTTGTAAAGTTACACTTTTATATGCTCTCTTCACTGATAAGAA
AACTAAAGAGGAAAGATTAAAGATGAAAATCTCACAACTCT