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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHH116
Library CH
(Link to library)
Clone ID CHH116
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12649-1|Contig-U16394-1
Original site URL
Representative seq. ID CHH116P
(Link to Original site)
Representative DNA sequence 
>CHH116 (CHH116Q) /CSM/CH/CHH1-A/CHH116Q.Seq.d/
AATAATTAAAACCAACAATAGCAATAATAATTATAATAATAATAAATAATAATAATAATA
ATAACAATAAAATAGTAACACCAATAAATAATAATATTAATAATAATAATAATAATAATA
ATAATAATAATAAAATAAAAAATATAATAATAATAATAGTAATAATAGTAATAATAATAA
TAAAATAATAATAATAGAAATAATTTCAATTTAAAAAATAAATAAAATAAAAAAAGGAAA
AAATAAAAAAAAAAATNGAATTTTTTTTTTAAAAAATTAAAATTTTAAAAAAAAAAXXXX
XXXXXXTTTGGTCAATGAAGATTGGGAATGCAAAGTTTCAGATTTTGGTCTTAGTCGTTT
TAATACCGCCGATAATTTAGNAACACTCAGTAAGATTCGTGGTACCTTTGCCTATTGTTC
ACCTGAAGTCGCCGTAGGTAATGGTAGTCTCTACACTACCAAATCTGATATCTACAGTAT
TGGTATCGTCTTTTGGGAATTAGTAACTCGTGTTATCAATGGTGAATACTCTCGTCCCTA
CAGTGAATATTCTCACATCAAAATGGT
sequence update 2002.10.25
Translated Amino Acid sequence 
*lkptiaiiiiiiinnnnnnnnkivtpinnninnnnnnnnnnnkikniiiiiviiviiii
k****k*fqfkk*ik*kkekikkkxefff*KIKILKKK---

---LVNEDWECKVSDFGLSRFNTADNLXTLSKIRGTFAYCSPEVAVGNGSLYTTKSDIYS
IGIVFWELVTRVINGEYSRPYSEYSHIKM
Translated Amino Acid sequence (All Frames) 
Frame A:
nn*nqq*q**l****iiiiiitik**hq*iiiliiiiiiiiiiik*ki************
*nnnnrnnfnlknk*nkkrkk*kkkxnfffkklkf*kk---

---fgq*rlgmqsfrfws*sf*yrr*fxntq*dswylcllft*srrr*w*slhyqi*ylq
ywyrllgisnscyqw*ilsslq*ifshqng

Frame B:
iiktnnsnnnynnnk******q*nsntnk**y************nkkynnnnsnnsnnnn
kiiiieiisi*kinkikkgknkkknxifflkn*nfkkk---

---LVNEDWECKVSDFGLSRFNTADNLXTLSKIRGTFAYCSPEVAVGNGSLYTTKSDIYS
IGIVFWELVTRVINGEYSRPYSEYSHIKM

Frame C:
*lkptiaiiiiiiinnnnnnnnkivtpinnninnnnnnnnnnnkikniiiiiviiviiii
k****k*fqfkk*ik*kkekikkkxefff*KIKILKKK---

---wsmkignakfqilvlvvlippii*xhsvrfvvplpivhlksp*vmvvstlpnlistv
lvssfgn**lvlsmvntlvptvniltskw
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHH116 (CHH116Q) /CSM/CH/CHH1-A/CHH116Q.Seq.d/                        511   e-144
SHK887 (SHK887Q) /CSM/SH/SHK8-D/SHK887Q.Seq.d/                        509   e-143
SHF208 (SHF208Q) /CSM/SH/SHF2-A/SHF208Q.Seq.d/                        509   e-143
SHE857 (SHE857Q) /CSM/SH/SHE8-C/SHE857Q.Seq.d/                        509   e-143
SHB434 (SHB434Q) /CSM/SH/SHB4-B/SHB434Q.Seq.d/                        509   e-143
CHS225 (CHS225Q) /CSM/CH/CHS2-B/CHS225Q.Seq.d/                        509   e-143
CHP295 (CHP295Q) /CSM/CH/CHP2-D/CHP295Q.Seq.d/                        509   e-143
AHC678 (AHC678Q) /CSM/AH/AHC6-D/AHC678Q.Seq.d/                        509   e-143
VHB666 (VHB666Q) /CSM/VH/VHB6-C/VHB666Q.Seq.d/                        505   e-142
AHF423 (AHF423Q) /CSM/AH/AHF4-A/AHF423Q.Seq.d/                        502   e-141
own update 2002. 9.29
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC139746|AC139746.15 Medicago truncatula clone mth2-17b20, complete sequence.    48   0.16   1
BG645865|BG645865.1 EST507484 KV3 Medicago truncatula cDNA clone pKV3-47F12 5' end, mRNA sequence.    48   0.16   1
BG453480|BG453480.1 NF092C08LF1F1055 Developing leaf Medicago truncatula cDNA clone NF092C08LF 5', mRNA sequence.    48   0.16   1
BF646211|BF646211.1 NF067F06EC1F1058 Elicited cell culture Medicago truncatula cDNA clone NF067F06EC 5', mRNA sequence.    48   0.16   1
AI974331|AI974331.1 T110180e KV0 Medicago truncatula cDNA clone pKV0-1I16, mRNA sequence.    48   0.16   1
BF644581|BF644581.1 NF016B08EC1F1064 Elicited cell culture Medicago truncatula cDNA clone NF016B08EC 5', mRNA sequence.    48   0.16   1
BF631769|BF631769.1 NF026A05DT1F1034 Drought Medicago truncatula cDNA clone NF026A05DT 5', mRNA sequence.    48   0.16   1
BQ164795|BQ164795.1 EST610664 KVKC Medicago truncatula cDNA clone pKVKC-1E8, mRNA sequence.    48   0.16   1
BF647893|BF647893.1 NF038B09EC1F1076 Elicited cell culture Medicago truncatula cDNA clone NF038B09EC 5', mRNA sequence.    48   0.16   1
BG646682|BG646682.1 EST508301 HOGA Medicago truncatula cDNA clone pHOGA-9D1 5' end, mRNA sequence.    48   0.16   1
dna update 2004.11. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54XX5) RecName: Full=Probable serine/threonine-protein kinase ...   177   1e-43
(Q55GG4) RecName: Full=Probable serine/threonine-protein kinase ...    94   2e-18
(Q54HC6) RecName: Full=Ankyrin repeat-containing protein kinase ...    89   8e-17
(Q54G28) RecName: Full=Probable tyrosine-protein kinase DDB_G029...    89   8e-17
(Q54RR9) RecName: Full=Probable serine/threonine-protein kinase ...    82   7e-15
(Q86HG9) RecName: Full=Probable serine/threonine-protein kinase ...    69   1e-10
(Q54R98) RecName: Full=Probable serine/threonine-protein kinase ...    65   2e-09
AY687390_1(AY687390|pid:none) Glycine max putative receptor-like...    64   2e-09
FB781323_1(FB781323|pid:none) Sequence 596 from Patent WO2008034...    64   3e-09
AC009323_3(AC009323|pid:none) Arabidopsis thaliana chromosome I ...    63   6e-09
protein update 2009. 4. 1
PSORT 

 psg: 0.54  gvh: 0.45  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 28.0 %: nuclear
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for CHH116 is cyt
5' end seq. ID CHH116F
5' end seq. 
>CHH116F.Seq
AATAATTAAAACCAACAATAGCAATAATAATTATAATAATAATAAATAATAATAATAATA
ATAACAATAAAATAGTAACACCAATAAATAATAATATTAATAATAATAATAATAATAATA
ATAATAATAATAAAATAAAAAATATAATAATAATAATAGTAATAATAGTAATAATAATAA
TAAAATAATAATAATAGAAATAATTTCAATTTAAAAAATAAATAAAATAAAAAAAGGAAA
AAATAAAAAAAAAAATNGAATTTTTTTTTTAAAAAATTAAAATTTTAAAAAAAAAANNNN
NNNNNN
Length of 5' end seq. 306
3' end seq. ID CHH116Z
3' end seq. 
>CHH116Z.Seq
NNNNNNNNNNTTTGGTCAATGAAGATTGGGAATGCAAAGTTTCAGATTTTGGTCTTAGTC
GTTTTAATACCGCCGATAATTTAGNAACACTCAGTAAGATTCGTGGTACCTTTGCCTATT
GTTCACCTGAAGTCGCCGTAGGTAATGGTAGTCTCTACACTACCAAATCTGATATCTACA
GTATTGGTATCGTCTTTTGGGAATTAGTAACTCGTGTTATCAATGGTGAATACTCTCGTC
CCTACAGTGAATATTCTCACATCAAAATGGT
Length of 3' end seq. 271
Connected seq. ID CHH116P
Connected seq. 
>CHH116P.Seq
AATAATTAAAACCAACAATAGCAATAATAATTATAATAATAATAAATAATAATAATAATA
ATAACAATAAAATAGTAACACCAATAAATAATAATATTAATAATAATAATAATAATAATA
ATAATAATAATAAAATAAAAAATATAATAATAATAATAGTAATAATAGTAATAATAATAA
TAAAATAATAATAATAGAAATAATTTCAATTTAAAAAATAAATAAAATAAAAAAAGGAAA
AAATAAAAAAAAAAATNGAATTTTTTTTTTAAAAAATTAAAATTTTAAAAAAAAAA----
------TTTGGTCAATGAAGATTGGGAATGCAAAGTTTCAGATTTTGGTCTTAGTCGTTT
TAATACCGCCGATAATTTAGNAACACTCAGTAAGATTCGTGGTACCTTTGCCTATTGTTC
ACCTGAAGTCGCCGTAGGTAATGGTAGTCTCTACACTACCAAATCTGATATCTACAGTAT
TGGTATCGTCTTTTGGGAATTAGTAACTCGTGTTATCAATGGTGAATACTCTCGTCCCTA
CAGTGAATATTCTCACATCAAAATGGT
Length of connected seq. 557
Full length Seq ID -
Full length Seq. -
Length of full length seq. -