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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHH101
Library CH
(Link to library)
Clone ID CHH101
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11708-1
Original site URL
Representative seq. ID CHH101P
(Link to Original site)
Representative DNA sequence 
>CHH101 (CHH101Q) /CSM/CH/CHH1-A/CHH101Q.Seq.d/
ATATTAAAATTGTTTTAAAAAAACATAAATATATAATTTTTTAAATTTAAAAAATATAAA
ATATTATAATATTATTTATAAATAAAATAAAAAAATAAAAAACCATCAAATAAAAAAAAA
AXXXXXXXXXXCCCACATCATAAAATTAAATTGGTAACATCAAAATATTCAATTGAATCG
TTTAATCCAAATAATCTACTTTTCTCCTATGATCCTCCAATAGTAAATACAACAACCACC
GTTAGTGAAGAAGGTGGTTTAATTCATCTAACTGGTACAAGTTTTAATAATGTTGGTTTA
TTCGTAACAGTTGGTAATGTAACTTGTGAAAATCCATACTCTGATACATTTGATTCTGTA
TCATGTTATATCCCACCATTTACTCCAATACTCTCTGATA
sequence update 2002.10.25
Translated Amino Acid sequence 
y*ncfkkt*iynflnlknikyyniiyk*NKKIKNHQIKKK---

---PHHKIKLVTSKYSIESFNPNNLLFSYDPPIVNTTTTVSEEGGLIHLTGTSFNNVGLF
VTVGNVTCENPYSDTFDSVSCYIPPFTPILSD
Translated Amino Acid sequence (All Frames) 
Frame A:
ilklf*knini*ffkfkkykil*yyl*ik*knkkpsnkkk---

---pts*n*ignikifn*iv*sk*stfll*ssnskynnhr**rrwfnssnwykf**cwfi
rnsw*cnl*ksil*yi*fcimlyptiysntl*

Frame B:
y*ncfkkt*iynflnlknikyyniiyk*NKKIKNHQIKKK---

---PHHKIKLVTSKYSIESFNPNNLLFSYDPPIVNTTTTVSEEGGLIHLTGTSFNNVGLF
VTVGNVTCENPYSDTFDSVSCYIPPFTPILSD

Frame C:
ikivlkkhkyiif*i*ki*niiilfinkikk*ktik*kk---

---hiiklnw*hqniqlnrliqiiyfspmilq**iqqpplvkkvv*fi*lvqvlimlvys
*qlvm*lvkihtlihlilyhvishhllqysli
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHH101 (CHH101Q) /CSM/CH/CHH1-A/CHH101Q.Seq.d/                        533   e-151
SHE559 (SHE559Q) /CSM/SH/SHE5-C/SHE559Q.Seq.d/                        529   e-149
SHA776 (SHA776Q) /CSM/SH/SHA7-D/SHA776Q.Seq.d/                        529   e-149
CHR582 (CHR582Q) /CSM/CH/CHR5-D/CHR582Q.Seq.d/                        529   e-149
CHO436 (CHO436Q) /CSM/CH/CHO4-B/CHO436Q.Seq.d/                        529   e-149
CHI219 (CHI219Q) /CSM/CH/CHI2-A/CHI219Q.Seq.d/                        529   e-149
CHG567 (CHG567Q) /CSM/CH/CHG5-C/CHG567Q.Seq.d/                        529   e-149
CHF235 (CHF235Q) /CSM/CH/CHF2-B/CHF235Q.Seq.d/                        519   e-146
SHG259 (SHG259Q) /CSM/SH/SHG2-C/SHG259Q.Seq.d/                        498   e-140
SFJ454 (SFJ454Q) /CSM/SF/SFJ4-C/SFJ454Q.Seq.d/                        496   e-139
own update 2002. 9.29
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CB981489|CB981489.1 CAB70004_IaR_A12 Cabernet Sauvignon Berry Post-Veraison - CAB7Vitis vinifera cDNA clone CAB70004_IaR_A12 3', mRNA sequence.    44   1.7    1
AP001102|AP001102.5 Homo sapiens genomic DNA, chromosome 11q clone:RP11-680L20, complete sequences.    34   1.9    3
Z81041|Z81041.1 Caenorhabditis elegans cosmid C27A7.               38   2.3    3
AC093814|AC093814.3 Homo sapiens BAC clone RP11-362I16 from 4, complete sequence.    32   3.1    2
AC087745|AC087745.1 Homo sapiens chromosome 8 clone CTC-361C3 map 8, LOW-PASS SEQUENCE SAMPLING.    32   3.3    2
CB981550|CB981550.1 CAB70004_IbF_A12 Cabernet Sauvignon Berry Post-Veraison - CAB7 Vitis vinifera cDNA clone CAB70004_IbF_A12 5', mRNA sequence.    42   6.7    1
AC021849|AC021849.5 Homo sapiens BAC clone RP11-366G5 from 2, complete sequence.    42   6.7    1
AC116100|AC116100.2 Dictyostelium discoideum chromosome 2 map 6163571-6199719 strain AX4, complete sequence.    42   6.7    1
AL141006|AL141006.1 Anopheles gambiae GSS T7 end of clone 03A02 of NotreDame1 library  from strain PEST of Anopheles gambiae (African malaria mosquito).    42   6.7    1
AC148341|AC148341.1 Medicago truncatula chromosome 7 clone mth2-60e18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.    34   8.4    4
dna update 2004.11. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116100_1(AC116100|pid:none) Dictyostelium discoideum chromosom...    42   0.006
AC117076_23(AC117076|pid:none) Dictyostelium discoideum chromoso...    40   0.031
AC116956_73(AC116956|pid:none) Dictyostelium discoideum chromoso...    36   0.34
DQ386647_1(DQ386647|pid:none) Astatotilapia burtoni clone BAC 20...    32   8.4
protein update 2008.10.30
PSORT 

 psg: 0.48  gvh: 0.35  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 24.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for CHH101 is nuc
5' end seq. ID CHH101F
5' end seq. 
>CHH101F.Seq
ATATTAAAATTGTTTTAAAAAAACATAAATATATAATTTTTTAAATTTAAAAAATATAAA
ATATTATAATATTATTTATAAATAAAATAAAAAAATAAAAAACCATCAAATAAAAAAAAA
ANNNNNNNNNN
Length of 5' end seq. 131
3' end seq. ID CHH101Z
3' end seq. 
>CHH101Z.Seq
NNNNNNNNNNCCCACATCATAAAATTAAATTGGTAACATCAAAATATTCAATTGAATCGT
TTAATCCAAATAATCTACTTTTCTCCTATGATCCTCCAATAGTAAATACAACAACCACCG
TTAGTGAAGAAGGTGGTTTAATTCATCTAACTGGTACAAGTTTTAATAATGTTGGTTTAT
TCGTAACAGTTGGTAATGTAACTTGTGAAAATCCATACTCTGATACATTTGATTCTGTAT
CATGTTATATCCCACCATTTACTCCAATACTCTCTGATA
Length of 3' end seq. 279
Connected seq. ID CHH101P
Connected seq. 
>CHH101P.Seq
ATATTAAAATTGTTTTAAAAAAACATAAATATATAATTTTTTAAATTTAAAAAATATAAA
ATATTATAATATTATTTATAAATAAAATAAAAAAATAAAAAACCATCAAATAAAAAAAAA
A----------CCCACATCATAAAATTAAATTGGTAACATCAAAATATTCAATTGAATCG
TTTAATCCAAATAATCTACTTTTCTCCTATGATCCTCCAATAGTAAATACAACAACCACC
GTTAGTGAAGAAGGTGGTTTAATTCATCTAACTGGTACAAGTTTTAATAATGTTGGTTTA
TTCGTAACAGTTGGTAATGTAACTTGTGAAAATCCATACTCTGATACATTTGATTCTGTA
TCATGTTATATCCCACCATTTACTCCAATACTCTCTGATA
Length of connected seq. 390
Full length Seq ID -
Full length Seq. -
Length of full length seq. -