CHG895
Library CH
(Link to library)
Clone ID CHG895
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11316-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHG895 (CHG895Q) /CSM/CH/CHG8-D/CHG895Q.Seq.d/
TTAGTACGTAATTTAGCATCCTGCGAAACTATGGGTTCTGCAACAACTATTTGCTCCGAT
AAAACTGGTACACTCACTCAAAATGTTATGTCTGTTGTCACTGGTACCATTTGTGGTGTT
TTCCCAACCCTCGACGGCATTGCTCAAAAGATTCCAAAACATGTTCAATCCATCCTCACC
GACGGTATGGCCATTAATTCAAATGCCTACGAAGGTGTTTCTAGTAAGGGTAAATTGGAA
TTCATTGGTTCAAAGACTGAATGTGCATTATTAAATTTTGGTAAATTATTTGGTTGCGAT
TATAATGAAGTTAGAAAACGTTTAGAAGTAGTCGAACTTTATCCATTCTCATCCGCAAGA
AAAAGAATGAGTGTATTGGTCAAACATGATCAAAATCTTCGTTTATTCACAAAGGGTGCC
TCTGAAATCATCCTTGGCCAATGTGGTAGTTACCTTGATGAAGCTGGTAACATTCGTCCA
ATCTCTGAGGCAAAAGCATACTTTGAAGAACAAATTAATAATTTCGCTAGTGATGCACTT
CGTACCATTGGTTTXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
LVRNLASCETMGSATTICSDKTGTLTQNVMSVVTGTICGVFPTLDGIAQKIPKHVQSILT
DGMAINSNAYEGVSSKGKLEFIGSKTECALLNFGKLFGCDYNEVRKRLEVVELYPFSSAR
KRMSVLVKHDQNLRLFTKGASEIILGQCGSYLDEAGNIRPISEAKAYFEEQINNFASDAL
RTIG---


Translated Amino Acid sequence (All Frames)
Frame A:
LVRNLASCETMGSATTICSDKTGTLTQNVMSVVTGTICGVFPTLDGIAQKIPKHVQSILT
DGMAINSNAYEGVSSKGKLEFIGSKTECALLNFGKLFGCDYNEVRKRLEVVELYPFSSAR
KRMSVLVKHDQNLRLFTKGASEIILGQCGSYLDEAGNIRPISEAKAYFEEQINNFASDAL
RTIG---


Frame B:
*yvi*hpaklwvlqqlfapiklvhslkmlcllslvpfvvfsqpstallkrfqnmfnpssp
tvwpliqmptkvflvrvnwnslvqrlnvhy*ilvnylvaiimklenv*k*snfihshpqe
ke*vywsnmikifvysqrvplksslanvvvtlmklvtfvqslrqkhtlknkliislvmhf
vplv---


Frame C:
st*fsilrnygfcnnyllr*nwythskcyvcchwyhlwcfpnprrhcskdsktcsihphr
rygh*fkclrrcf**g*igihwfkd*mciikfw*iiwlrl**s*ktfrssrtlsilirkk
knecigqt*skssfihkgcl*nhpwpmw*lp**sw*hssnl*gksil*rtn**fr**cts
yhw---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHG895 (CHG895Q) /CSM/CH/CHG8-D/CHG895Q.Seq.d/ 1098 0.0
VHC641 (VHC641Q) /CSM/VH/VHC6-B/VHC641Q.Seq.d/ 872 0.0
SHE319 (SHE319Q) /CSM/SH/SHE3-A/SHE319Q.Seq.d/ 710 0.0
SHJ655 (SHJ655Q) /CSM/SH/SHJ6-C/SHJ655Q.Seq.d/ 218 7e-56
SHE405 (SHE405Q) /CSM/SH/SHE4-A/SHE405Q.Seq.d/ 196 3e-49
CFG368 (CFG368Q) /CSM/CF/CFG3-C/CFG368Q.Seq.d/ 68 2e-10
CHQ205 (CHQ205Q) /CSM/CH/CHQ2-A/CHQ205Q.Seq.d/ 56 6e-07
VHM248 (VHM248Q) /CSM/VH/VHM2-B/VHM248Q.Seq.d/ 44 0.002
VHI386 (VHI386Q) /CSM/VH/VHI3-D/VHI386Q.Seq.d/ 44 0.002
VHD745 (VHD745Q) /CSM/VH/VHD7-B/VHD745Q.Seq.d/ 44 0.002

own update 2002.11.22
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X89369|X89369.1 D.discoideum mRNA for PAT1 protein. 1098 0.0 1
U41360|U41360.1 Tetrahymena thermophila P-type ATPase (TPA7) gene, partial cds. 52 0.010 1
U40993|U40993.1 Tetrahymena thermophila P-type ATPase (TPA1) gene, partial cds. 50 0.039 1
CO015219|CO015219.1 EST785601 Coccidioides posadasii saprobic phase cDNA library, greater than 4kb Coccidioides posadasii cDNA clone CIBBH16 5' end, mRNA sequence. 50 0.039 1
CF817810|CF817810.1 EST695192 Coccidioides posadasii saprobic phase cDNA library, greater than 4kb Coccidioides posadasii cDNA clone CIBB089 3' end, mRNA sequence. 50 0.039 1
CF812855|CF812855.1 EST690237 Coccidioides posadasii saprobic phase cDNA library, greater than 4kb Coccidioides posadasii cDNA clone CIBA685 3' end, mRNA sequence. 50 0.039 1
CO025873|CO025873.1 EST804257 Coccidioides posadasii spherule cDNA library, 0.5 to 5.3 kb Coccidioides posadasii cDNA clone CIFAA13 5' end, mRNA sequence. 50 0.039 1
CF819336|CF819336.1 EST696718 Coccidioides posadasii saprobic phase cDNA library, greater than 4kb Coccidioides posadasii cDNA clone CIBBA05 3' end, mRNA sequence. 50 0.039 1
CO016935|CO016935.1 EST787317 Coccidioides posadasii saprobic phase cDNA library, greater than 4kb Coccidioides posadasii cDNA clone CIBBR48 3' end, mRNA sequence. 50 0.039 1
CD169219|CD169219.1 MM1-0024P-M073-A12-U.B MM1-0024 Schistosoma mansoni cDNA clone MM1-0024P-M073-A12.B, mRNA sequence. 46 0.054 2
dna update 2004.11. 2
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

S57726(S57726) PAT1 protein - slime mold (Dictyostelium discoide... 365 e-100
FB801426_1(FB801426|pid:none) Sequence 20699 from Patent WO20080... 152 4e-36
FB868947_1(FB868947|pid:none) Sequence 88220 from Patent WO20080... 146 4e-34
D13984_1(D13984|pid:none) Arabidopsis thaliana ACA1 gene for chl... 146 4e-34
AC012375_23(AC012375|pid:none) Genomic sequence for Arabidopsis ... 146 4e-34
L08468_1(L08468|pid:none) Arabidopsis thaliana envelope Ca2+-ATP... 146 4e-34
D13983_1(D13983|pid:none) Arabidopsis thaliana mRNA for chloropl... 146 4e-34
AC146856_21(AC146856|pid:none) Medicago truncatula clone mth2-16... 138 1e-31
CR932152_1(CR932152|pid:none) Paramecium tetraurelia macronuclea... 137 1e-31
AF195029_1(AF195029|pid:none) Glycine max plasma membrane Ca2+-A... 136 4e-31
protein update 2009. 4. 1
PSORT

psg: 0.90 gvh: 0.43 alm: 0.38 top: 0.33 tms: 0.00 mit: 0.33 mip: 0.02
nuc: 0.06 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
20.0 %: nuclear
12.0 %: mitochondrial
8.0 %: vacuolar
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for CHG895 is cyt

5' end seq. ID CHG895F
5' end seq.
>CHG895F.Seq
TTAGTACGTAATTTAGCATCCTGCGAAACTATGGGTTCTGCAACAACTATTTGCTCCGAT
AAAACTGGTACACTCACTCAAAATGTTATGTCTGTTGTCACTGGTACCATTTGTGGTGTT
TTCCCAACCCTCGACGGCATTGCTCAAAAGATTCCAAAACATGTTCAATCCATCCTCACC
GACGGTATGGCCATTAATTCAAATGCCTACGAAGGTGTTTCTAGTAAGGGTAAATTGGAA
TTCATTGGTTCAAAGACTGAATGTGCATTATTAAATTTTGGTAAATTATTTGGTTGCGAT
TATAATGAAGTTAGAAAACGTTTAGAAGTAGTCGAACTTTATCCATTCTCATCCGCAAGA
AAAAGAATGAGTGTATTGGTCAAACATGATCAAAATCTTCGTTTATTCACAAAGGGTGCC
TCTGAAATCATCCTTGGCCAATGTGGTAGTTACCTTGATGAAGCTGGTAACATTCGTCCA
ATCTCTGAGGCAAAAGCATACTTTGAAGAACAAATTAATAATTTCGCTAGTGATGCACTT
CGTACCATTGGTTTNNNNNNNNNN
Length of 5' end seq. 564
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -