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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHG826
Library CH
(Link to library)
Clone ID CHG826
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U12755-1
Original site URL
Representative seq. ID CHG826P
(Link to Original site)
Representative DNA sequence 
>CHG826 (CHG826Q) /CSM/CH/CHG8-B/CHG826Q.Seq.d/
AATAATCAATAAAAAATAAAAAAATAATAAAATAAAATAAACAATAATAATAATAATAAT
AATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATATA
CGATGTTGAGTTCAACAGCAATATTANAGGCATCAGGTGATGTCGCAATTAATTATCAAC
AATATATTTATCCGATTATAATCAATAAATTATCAACTTTAAATTATACTATTAAAAATA
AAAAATATTACTCACAATATAAATACTCTATACAATTCCAAAATGAATTTCAAAAAAATT
TAAAAATCTATAATAATAGTAATAATAATAATAATAATAATAATAATAATAAAATTAATA
AAAATAATAATAATAATAATAATAATATTAGTAAATTTTTCATTCAAAATAATAATNTTG
ATAAAAAAGTTTTGAGACATTTNTATTCAAGTACAAAATTAAATNATGCTAAACAACAAC
AACAATTATTTAAAAATAATGAAACTTTTNATGAANCAGNTGGAGCATCACTTNTACCAA
TTATAAATAAANTACAAGAGAATGCAGCATTANTXXXXXXXXXXTCAACATCATCAACAT
CATCATCACCANCATCATCATCATCATCATTACCTTTACCACAAAATTNTAATCCTTATA
ACGATGCTTTAAATCCTTATAATATTGATCGTTNTTATCCAATTGATAATCAAATTAAAC
AGCAGCANCAACAACAACAACAACAACAACAACAATCATATCAACAACAACAACAACAAC
AACAAAAGCAACAATCAGGTTTCTTATCAAGAATATTTGGTTCATCATCTTCACCACCAT
CACCACCATCACCACCACAACCAAAACAACAACAATCACATGAAATTCAAATTCAGCAGC
AACAACAACAACAACAACAACAACATTTAAAAAAACAAAATTTAATATTTGATGATAAAT
TCAAATTAGAACAATATGGACTTAATGATATAACAGAAGATGAAAAGAAACAAATTTATT
TACTTAGAAGATTATTATTAGCTTATAATGATATAGCTCAATTTAATCTTCAACAAAATA
CTATGAAATTAGTATCATTATTATTAATTGATAAATCAAAGGATATCCTTCAAAAAGAAT
TAATAGATTCATTGTACGATCAATCCTCTGTTGATCAATTACTCAGAGAGAACGAATTAG
TAGTTGCCAAGAGAAACGAATGTATTTATAAATTGGATTTATTAAAGAAAGCAAAGAAAT
CTTTATCTCAATCNAAAATAGGATTTACTTCATTGTATTAATAG
sequence update 2002.10.25
Translated Amino Acid sequence 
*siknkkiik*nkq************************YTMLSSTAILXASGDVAINYQQ
YIYPIIINKLSTLNYTIKNKKYYSQYKYSIQFQNEFQKNLKIYNNSNNNNNNNNNNKINK
NNNNNNNNISKFFIQNNNXDKKVLRHXYSSTKLNXAKQQQQLFKNNETFXEXXGASLXPI
INKXQENAAL---

---STSSTSSSPXSSSSSLPLPQNXNPYNDALNPYNIDRXYPIDNQIKQQXQQQQQQQQQ
SYQQQQQQQQKQQSGFLSRIFGSSSSPPSPPSPPQPKQQQSHEIQIQQQQQQQQQQHLKK
QNLIFDDKFKLEQYGLNDITEDEKKQIYLLRRLLLAYNDIAQFNLQQNTMKLVSLLLIDK
SKDILQKELIDSLYDQSSVDQLLRENELVVAKRNECIYKLDLLKKAKKSLSQSKIGFTSL
Y**
Translated Amino Acid sequence (All Frames) 
Frame A:
nnq*kikk**nkinnnnnnnnnnnnnnnnnnnnnnnnnnirc*vqqqyxrhqvmsqliin
nifirl*sinyql*iillkiknithnintlynskmnfkki*ksiiiviiiiiiiiiikli
kiiiiiiiilvnfsfkiixlikkf*dixiqvqn*xmlnnnnnylkimklxmxqxehhxyq
l*ixykrmqhx---

---STSSTSSSPXSSSSSLPLPQNXNPYNDALNPYNIDRXYPIDNQIKQQXQQQQQQQQQ
SYQQQQQQQQKQQSGFLSRIFGSSSSPPSPPSPPQPKQQQSHEIQIQQQQQQQQQQHLKK
QNLIFDDKFKLEQYGLNDITEDEKKQIYLLRRLLLAYNDIAQFNLQQNTMKLVSLLLIDK
SKDILQKELIDSLYDQSSVDQLLRENELVVAKRNECIYKLDLLKKAKKSLSQSKIGFTSL
Y**

Frame B:
iinkk*knnkik*tiiiiiiiiiiiiiiiiiiiiiiiiiydvefnsnixgir*crn*lst
iylsdynq*iinfklyy*k*killti*ilytipk*iskkfknl**************n**
k*******y**ifhsk**x**ksfetfxfkykikxc*ttttii*k**nfx*xxwsitxtn
yk*xtrecsix---

---qhhqhhhhxhhhhhhylyhkixilitml*iliilivxiqliiklnssxnnnnnnnnn
hinnnnnnnksnnqvsyqeylvhhlhhhhhhhhhnqnnnnhmkfkfssnnnnnnnni*kn
ki*ylminsn*nnmdlmi*qkmkrnkfiyledyy*limi*lnlifnkil*n*yhyy*lin
qrisfkkn**ihctinpllinysertn**lpretnvfinwiy*rkqrnlylnxk*dllhc
in

Frame C:
*siknkkiik*nkq************************YTMLSSTAILXASGDVAINYQQ
YIYPIIINKLSTLNYTIKNKKYYSQYKYSIQFQNEFQKNLKIYNNSNNNNNNNNNNKINK
NNNNNNNNISKFFIQNNNXDKKVLRHXYSSTKLNXAKQQQQLFKNNETFXEXXGASLXPI
INKXQENAAL---

---niiniiitxiiiiiitfttkx*sl*rcfksl*y*sxlsn**sn*taaxtttttttti
istttttttkatirflikniwfiifttittittttktttit*nsnsaattttttttfkkt
kfni***iqirtiwt**ynrr*ketnlft*kiiisl**yssi*sstkyyeisiiiin**i
kgypskrinrfivrsilc*sitqrerisscqekrmyl*igfikeskeifisixnriyfiv
li
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHG826 (CHG826Q) /CSM/CH/CHG8-B/CHG826Q.Seq.d/                        726   0.0
VHJ466 (VHJ466Q) /CSM/VH/VHJ4-C/VHJ466Q.Seq.d/                        720   0.0
SSK612 (SSK612Q) /CSM/SS/SSK6-A/SSK612Q.Seq.d/                        684   0.0
VHN521 (VHN521Q) /CSM/VH/VHN5-A/VHN521Q.Seq.d/                        670   0.0
VHC887 (VHC887Q) /CSM/VH/VHC8-D/VHC887Q.Seq.d/                        670   0.0
VHP393 (VHP393Q) /CSM/VH/VHP3-D/VHP393Q.Seq.d/                        668   0.0
AHL247 (AHL247Q) /CSM/AH/AHL2-B/AHL247Q.Seq.d/                        638   0.0
AHO516 (AHO516Q) /CSM/AH/AHO5-A/AHO516Q.Seq.d/                        525   e-148
VHM317 (VHM317Q) /CSM/VH/VHM3-A/VHM317Q.Seq.d/                        254   3e-66
CHL646 (CHL646Q) /CSM/CH/CHL6-B/CHL646Q.Seq.d/                        254   3e-66
own update 2002. 9.29
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AJ251163|AJ251163.1 Dictyostelium discoideum dymB gene for dynamin B homologue.   670   0.0    7
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    46   2e-09  16
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    46   7e-07  13
AF362369|AF362369.2 Dictyostelium discoideum histidine kinase DhkG (dhkG) gene, complete cds.    44   7e-07  5
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    36   8e-06  17
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5.    40   2e-05  16
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34   4e-04  12
AC115592|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence.    34   4e-04  12
AL929357|AL929357.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5.    36   5e-04  16
AC005140|AC005140.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    38   7e-04  14
dna update 2004.10.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ251163_1(AJ251163|pid:none) Dictyostelium discoideum dymB gene...   227   6e-58
FM992692_114(FM992692|pid:none) Candida dubliniensis CD36 chromo...    61   1e-07
(Q94464) RecName: Full=Dynamin-A;  &X99669_1(X99669|pid:none)          59   4e-07
FM992690_513(FM992690|pid:none) Candida dubliniensis CD36 chromo...    59   5e-07
CR382135_509(CR382135|pid:none) Debaryomyces hansenii strain CBS...    57   1e-06
CP000496_423(CP000496|pid:none) Pichia stipitis CBS 6054 chromos...    57   1e-06
CR382132_1233(CR382132|pid:none) Yarrowia lipolytica strain CLIB...    57   2e-06
CP000501_276(CP000501|pid:none) Pichia stipitis CBS 6054 chromos...    56   3e-06
CR382126_555(CR382126|pid:none) Kluyveromyces lactis strain NRRL...    55   4e-06
AY780359_1(AY780359|pid:none) Pichia angusta dynamin-like GTP-bi...    54   9e-06
protein update 2009. 4. 1
PSORT 

 psg: 0.92  gvh: 0.57  alm: 0.42  top: 0.40  tms: 0.00  mit: 0.26  mip: 0.18
 nuc: 0.08  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: extracellular, including cell wall
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for CHG826 is cyt
5' end seq. ID CHG826F
5' end seq. 
>CHG826F.Seq
AATAATCAATAAAAAATAAAAAAATAATAAAATAAAATAAACAATAATAATAATAATAAT
AATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATATA
CGATGTTGAGTTCAACAGCAATATTANAGGCATCAGGTGATGTCGCAATTAATTATCAAC
AATATATTTATCCGATTATAATCAATAAATTATCAACTTTAAATTATACTATTAAAAATA
AAAAATATTACTCACAATATAAATACTCTATACAATTCCAAAATGAATTTCAAAAAAATT
TAAAAATCTATAATAATAGTAATAATAATAATAATAATAATAATAATAATAAAATTAATA
AAAATAATAATAATAATAATAATAATATTAGTAAATTTTTCATTCAAAATAATAATNTTG
ATAAAAAAGTTTTGAGACATTTNTATTCAAGTACAAAATTAAATNATGCTAAACAACAAC
AACAATTATTTAAAAATAATGAAACTTTTNATGAANCAGNTGGAGCATCACTTNTACCAA
TTATAAATAAANTACAAGAGAATGCAGCATTANTNNNNNNNNNN
Length of 5' end seq. 584
3' end seq. ID CHG826Z
3' end seq. 
>CHG826Z.Seq
NNNNNNNNNNTCAACATCATCAACATCATCATCACCANCATCATCATCATCATCATTACC
TTTACCACAAAATTNTAATCCTTATAACGATGCTTTAAATCCTTATAATATTGATCGTTN
TTATCCAATTGATAATCAAATTAAACAGCAGCANCAACAACAACAACAACAACAACAACA
ATCATATCAACAACAACAACAACAACAACAAAAGCAACAATCAGGTTTCTTATCAAGAAT
ATTTGGTTCATCATCTTCACCACCATCACCACCATCACCACCACAACCAAAACAACAACA
ATCACATGAAATTCAAATTCAGCAGCAACAACAACAACAACAACAACAACATTTAAAAAA
ACAAAATTTAATATTTGATGATAAATTCAAATTAGAACAATATGGACTTAATGATATAAC
AGAAGATGAAAAGAAACAAATTTATTTACTTAGAAGATTATTATTAGCTTATAATGATAT
AGCTCAATTTAATCTTCAACAAAATACTATGAAATTAGTATCATTATTATTAATTGATAA
ATCAAAGGATATCCTTCAAAAAGAATTAATAGATTCATTGTACGATCAATCCTCTGTTGA
TCAATTACTCAGAGAGAACGAATTAGTAGTTGCCAAGAGAAACGAATGTATTTATAAATT
GGATTTATTAAAGAAAGCAAAGAAATCTTTATCTCAATCNAAAATAGGATTTACTTCATT
GTATTAATAG
Length of 3' end seq. 730
Connected seq. ID CHG826P
Connected seq. 
>CHG826P.Seq
AATAATCAATAAAAAATAAAAAAATAATAAAATAAAATAAACAATAATAATAATAATAAT
AATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATATA
CGATGTTGAGTTCAACAGCAATATTANAGGCATCAGGTGATGTCGCAATTAATTATCAAC
AATATATTTATCCGATTATAATCAATAAATTATCAACTTTAAATTATACTATTAAAAATA
AAAAATATTACTCACAATATAAATACTCTATACAATTCCAAAATGAATTTCAAAAAAATT
TAAAAATCTATAATAATAGTAATAATAATAATAATAATAATAATAATAATAAAATTAATA
AAAATAATAATAATAATAATAATAATATTAGTAAATTTTTCATTCAAAATAATAATNTTG
ATAAAAAAGTTTTGAGACATTTNTATTCAAGTACAAAATTAAATNATGCTAAACAACAAC
AACAATTATTTAAAAATAATGAAACTTTTNATGAANCAGNTGGAGCATCACTTNTACCAA
TTATAAATAAANTACAAGAGAATGCAGCATTANT----------TCAACATCATCAACAT
CATCATCACCANCATCATCATCATCATCATTACCTTTACCACAAAATTNTAATCCTTATA
ACGATGCTTTAAATCCTTATAATATTGATCGTTNTTATCCAATTGATAATCAAATTAAAC
AGCAGCANCAACAACAACAACAACAACAACAACAATCATATCAACAACAACAACAACAAC
AACAAAAGCAACAATCAGGTTTCTTATCAAGAATATTTGGTTCATCATCTTCACCACCAT
CACCACCATCACCACCACAACCAAAACAACAACAATCACATGAAATTCAAATTCAGCAGC
AACAACAACAACAACAACAACAACATTTAAAAAAACAAAATTTAATATTTGATGATAAAT
TCAAATTAGAACAATATGGACTTAATGATATAACAGAAGATGAAAAGAAACAAATTTATT
TACTTAGAAGATTATTATTAGCTTATAATGATATAGCTCAATTTAATCTTCAACAAAATA
CTATGAAATTAGTATCATTATTATTAATTGATAAATCAAAGGATATCCTTCAAAAAGAAT
TAATAGATTCATTGTACGATCAATCCTCTGTTGATCAATTACTCAGAGAGAACGAATTAG
TAGTTGCCAAGAGAAACGAATGTATTTATAAATTGGATTTATTAAAGAAAGCAAAGAAAT
CTTTATCTCAATCNAAAATAGGATTTACTTCATTGTATTAATAG
Length of connected seq. 1294
Full length Seq ID -
Full length Seq. -
Length of full length seq. -