CHG749
Library CH
(Link to library)
Clone ID CHG749
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16524-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHG749 (CHG749Q) /CSM/CH/CHG7-C/CHG749Q.Seq.d/
ATGATTATTATAATTCAAATTAAAAATATATTATATAAATATATATAAATATATATTAAA
TAAAAATAATAATAAAATAAATTTAATATAATAAAAAATTTTTTTGAGAAAAAAAAAAAA
NTAAAAAAAAAAAAAAAAAAAAAACCCNAAAAAANCCNAAAAAAAAANCCCNNNAAAAAA
AXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
miiiiqiknilykyi*iyik*k***NKFNIIKNFFEKKKKXKKKKKKKPXKXXKKXPXKK
---


Translated Amino Acid sequence (All Frames)
Frame A:
miiiiqiknilykyi*iyik*k***NKFNIIKNFFEKKKKXKKKKKKKPXKXXKKXPXKK
---


Frame B:
*ll*fklkiyyiniykyilnknnnkinli**kiflrkkkx*kkkkkknpkkxxkkxpxk-
--


Frame C:
dyynsn*kyii*iyiniy*ikiiik*i*ynkkff*ekkkxkkkkkkktxkxpkkkxxxk-
--


Homology vs CSM-cDNA

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1008
Number of Sequences: 97611
Number of extensions: 1008
Number of successful extensions: 667
Number of sequences better than 10.0: 0
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 667
Number of HSP's gapped (non-prelim): 0
length of query: 191
length of database: 80,480,566
effective HSP length: 17
effective length of query: 174
effective length of database: 78,821,179
effective search space: 13714885146
effective search space used: 13714885146
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)








Dictyostelium discoideum cDNA Project Home



own update 2009. 4. 4
Homology vs DNA

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Hits to DB: 277,841
Number of Sequences: 38731518
Number of extensions: 277841
Number of successful extensions: 36986
Number of sequences better than 10.0: 0
length of query: 191
length of database: Z,915,520,312
effective HSP length: 22
effective length of query: 169
effective length of database: Z,063,426,916
effective search space: 7108719148804
effective search space used: 7108719148804
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.








Dictyostelium discoideum cDNA Project Home



dna update 2004.10.25
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 10,546,995
protein update 2009. 4. 1
PSORT

psg: 0.12 gvh: -0.17 alm: 0.83 top: 0.53 tms: 0.00 mit: 0.28 mip: 0.00
nuc: 0.79 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

72.0 %: nuclear
20.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: plasma membrane

>> prediction for CHG749 is nuc

5' end seq. ID CHG749F
5' end seq.
>CHG749F.Seq
ATGATTATTATAATTCAAATTAAAAATATATTATATAAATATATATAAATATATATTAAA
TAAAAATAATAATAAAATAAATTTAATATAATAAAAAATTTTTTTGAGAAAAAAAAAAAA
NTAAAAAAAAAAAAAAAAAAAAAACCCNAAAAAANCCNAAAAAAAAANCCCNNNAAAAAA
ANNNNNNNNNN
Length of 5' end seq. 191
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -