CHG613
Library CH
(Link to library)
Clone ID CHG613
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16510-1|Contig-U16524-1
Original site URL
Representative seq. ID CHG613P
(Link to Original site)
Representative DNA sequence
>CHG613 (CHG613Q) /CSM/CH/CHG6-A/CHG613Q.Seq.d/
AACTCAGTAATAATAATAATAAAAATAATAACAATAATAAGGAATTATAATCAAATAATA
ATATAGCTATAATCTATAATTACTGTAGTAAAATTACGTATACATATATAAATAATTATT
ATTATCATTGTTTTTAAAAATAAATAAATAAATAATAAAAAAAAAAXXXXXXXXXXTCNC
CATCATCATNTGCTGCAAGNTNTTCTCCATCTTCATNTGCNGCAAGNTCTTCNCCATCTT
CATNTGCTGCAAGNTNTTCCCCATCTTCATCTGCATCATCAAGCTNTTCCCCNTCTTCNT
CTGCATCATCAAGNTNTGCCCCATCTTCATCTGCATCATCAAGCTCTGCTCCATCTTCAT
CTGCATCATCTTCATCNTGCATCATCTTCATCTGCATCATTTGCAGCAACTACAGCTGCA
ACTACAATTGCAACTACAGCTGCNNCTACAACTGCAACTACANCCGCAACC
sequence update 2002.10.25
Translated Amino Acid sequence
nsviiiikiitiirnynqiii*l*siitvvklrihi*iiiiiivfknk*INNKKK---

---SPSSXAAXXSPSSXAAXSSPSSXAAXXSPSSSASSSXSPSSSASSXXAPSSSASSSS
APSSSASSSSCIIFICIICSNYSCNYNCNYSCXYNCNYXRN


Translated Amino Acid sequence (All Frames)
Frame A:
nsviiiikiitiirnynqiii*l*siitvvklrihi*iiiiiivfknk*INNKKK---

---SPSSXAAXXSPSSXAAXSSPSSXAAXXSPSSSASSSXSPSSSASSXXAPSSSASSSS
APSSSASSSSCIIFICIICSNYSCNYNCNYSCXYNCNYXRN

Frame B:
tq*****k**q**giiik**ysynl*ll**nyvyiyk*lllslflkink*iikkk---

---xhhhxlqxxlhlhxxqxlxhlhxlqxxphlhlhhqaxpxlxlhhqxxphlhlhhqal
lhlhlhhlhxassssasfaattaattiattaaxttattxat

Frame C:
lsnnnnknnnnnkel*snnniaiiynycskitytyinnyyyhcf*k*ink**kk---

---xiixcckxfsifxcxkxfxifxcckxfpificiiklfpxfxciikxcpificiiklc
sificiifixhhlhlhhlqqlqlqlqlqlqlxlqlqlxpq

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLI263 (SLI263Q) /CSM/SL/SLI2-C/SLI263Q.Seq.d/ 192 3e-48
SLH548 (SLH548Q) /CSM/SL/SLH5-B/SLH548Q.Seq.d/ 192 3e-48
SLH472 (SLH472Q) /CSM/SL/SLH4-C/SLH472Q.Seq.d/ 192 3e-48
SLH386 (SLH386Q) /CSM/SL/SLH3-D/SLH386Q.Seq.d/ 192 3e-48
SLH314 (SLH314Q) /CSM/SL/SLH3-A/SLH314Q.Seq.d/ 192 3e-48
SLH308 (SLH308Q) /CSM/SL/SLH3-A/SLH308Q.Seq.d/ 192 3e-48
SLF396 (SLF396Q) /CSM/SL/SLF3-D/SLF396Q.Seq.d/ 192 3e-48
SLE543 (SLE543Q) /CSM/SL/SLE5-B/SLE543Q.Seq.d/ 192 3e-48
SLE435 (SLE435Q) /CSM/SL/SLE4-B/SLE435Q.Seq.d/ 192 3e-48
SLE278 (SLE278Q) /CSM/SL/SLE2-D/SLE278Q.Seq.d/ 192 3e-48

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X16491|X16491.1 Dictyostelium discoideum sp96 gene for spore coat protein SP96. 192 2e-73 4
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 192 2e-69 5
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence. 52 0.008 1
AC122076|AC122076.4 Rattus norvegicus clone CH230-277E22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces. 50 0.032 1
AZ574185|AZ574185.1 325PvG08 Pv MBN #30 Plasmodium vivax genomic 3', DNA sequence. 42 0.045 2
Y17350|Y17350.1 Laminaria digitata simple tandem repeat DNA, Ld2-167. 44 2.0 1
AV859546|AV859546.1 Ciona intestinalis cDNA, clone:rcicl17j17, 3' end, single read. 32 3.7 3
AY699072|AY699072.1 Fenneropenaeus chinensis clone TE1-58445 minisatellite sequence. 30 5.0 2
CF587772|CF587772.1 USDA-FP_120900-084 Acyrthosiphon pisum, Pea Aphid Acyrthosiphon pisum cDNA clone WHAP-006_A11 5', mRNA sequence. 42 7.9 1
BQ172854|BQ172854.1 1011e03 rice seed cDNA library Oryza sativa cDNA, mRNA sequence. 42 7.9 1
dna update 2004.10.18
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 107,366,979
protein update 2009. 4. 1
PSORT

psg: 0.75 gvh: 0.56 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.89 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

80.0 %: mitochondrial
8.0 %: cytoplasmic
8.0 %: nuclear
4.0 %: cytoskeletal

>> prediction for CHG613 is mit

5' end seq. ID CHG613F
5' end seq.
>CHG613F.Seq
AACTCAGTAATAATAATAATAAAAATAATAACAATAATAAGGAATTATAATCAAATAATA
ATATAGCTATAATCTATAATTACTGTAGTAAAATTACGTATACATATATAAATAATTATT
ATTATCATTGTTTTTAAAAATAAATAAATAAATAATAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 176
3' end seq. ID CHG613Z
3' end seq.
>CHG613Z.Seq
NNNNNNNNNNTCNCCATCATCATNTGCTGCAAGNTNTTCTCCATCTTCATNTGCNGCAAG
NTCTTCNCCATCTTCATNTGCTGCAAGNTNTTCCCCATCTTCATCTGCATCATCAAGCTN
TTCCCCNTCTTCNTCTGCATCATCAAGNTNTGCCCCATCTTCATCTGCATCATCAAGCTC
TGCTCCATCTTCATCTGCATCATCTTCATCNTGCATCATCTTCATCTGCATCATTTGCAG
CAACTACAGCTGCAACTACAATTGCAACTACAGCTGCNNCTACAACTGCAACTACANCCG
CAACC
Length of 3' end seq. 305
Connected seq. ID CHG613P
Connected seq.
>CHG613P.Seq
AACTCAGTAATAATAATAATAAAAATAATAACAATAATAAGGAATTATAATCAAATAATA
ATATAGCTATAATCTATAATTACTGTAGTAAAATTACGTATACATATATAAATAATTATT
ATTATCATTGTTTTTAAAAATAAATAAATAAATAATAAAAAAAAAA----------TCNC
CATCATCATNTGCTGCAAGNTNTTCTCCATCTTCATNTGCNGCAAGNTCTTCNCCATCTT
CATNTGCTGCAAGNTNTTCCCCATCTTCATCTGCATCATCAAGCTNTTCCCCNTCTTCNT
CTGCATCATCAAGNTNTGCCCCATCTTCATCTGCATCATCAAGCTCTGCTCCATCTTCAT
CTGCATCATCTTCATCNTGCATCATCTTCATCTGCATCATTTGCAGCAACTACAGCTGCA
ACTACAATTGCAACTACAGCTGCNNCTACAACTGCAACTACANCCGCAACC
Length of connected seq. 461
Full length Seq ID -
Full length Seq. -
Length of full length seq. -