CHG471
Library CH
(Link to library)
Clone ID CHG471
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11143-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHG471 (CHG471Q) /CSM/CH/CHG4-C/CHG471Q.Seq.d/
AAAAATATAATTAACATCTAAAAATAAACCAAAAAAAAACAATTTTATTTATTAAGAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNAAAAAAAAAAAAAAAAAAAAAATTT
TTNNTTTTTTNAAAAAAAAAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
kyn*HLKINQKKTILFIKKKKKKKKKKKKKXKKKKKKKIFXFXKK---


Translated Amino Acid sequence (All Frames)
Frame A:
kniini*k*tkkkqfyllrkkkkkkkkkkkkxkkkkkkkfxxfxkk---


Frame B:
ki*ltsknkpkknnfiy*ekkkkkkkkkkkxxkkkkkknfxffxkk---


Frame C:
kyn*HLKINQKKTILFIKKKKKKKKKKKKKXKKKKKKKIFXFXKK---


Homology vs CSM-cDNA -
own update ----------
Homology vs DNA

***** No hits found ******

Lambda K H
-1.00 -1.00 -1.00

[blastall] WARNING: [000.000] 1097109908.dbm.dna: SetUpBlastSearch failed.
[blastall] ERROR: [000.000] 1097109908.dbm.dna: BLASTSetUpSearch: Unable to calculate Karlin-Altschul params, check query sequence

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.








Dictyostelium discoideum cDNA Project Home



dna update 2004.10. 8
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 48,067,804
protein update 2009. 4. 1
PSORT

psg: 0.63 gvh: -0.12 alm: 0.73 top: 0.53 tms: 0.00 mit: 0.38 mip: 0.00
nuc: 1.91 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

76.0 %: nuclear
12.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: cytoskeletal

>> prediction for CHG471 is nuc

5' end seq. ID CHG471F
5' end seq.
>CHG471F.Seq
AAAAATATAATTAACATCTAAAAATAAACCAAAAAAAAACAATTTTATTTATTAAGAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNAAAAAAAAAAAAAAAAAAAAAATTT
TTNNTTTTTTNAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 150
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -